prot_Ecto-sp13_S_contig14818.3675.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14818.3675.1
Unique Nameprot_Ecto-sp13_S_contig14818.3675.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length197
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14818.3675.1 vs. uniprot
Match: D7FPM2_ECTSI (Myst-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM2_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 9.300e-66
Identity = 173/194 (89.18%), Postives = 175/194 (90.21%), Query Frame = 0 
Query:    1 MTNPGARPRGRPKGSTNKKAATAAGKAKQQHQQHHLSPSVQAQEKLVDFVDLAVVPREAAKKATSRLHGSTPSRDATVAPSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKKHGPSPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPVTTTPASGK 194
            MTNP  R        TNKKAATAAGKAKQQHQQHHLSPSVQAQE+L DFVDLAVVPREAAKKATSRL+GSTPSRDAT APSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KHGPSP RGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKP  TTPA GK
Sbjct:    1 MTNPRGRXXXXXXXXTNKKAATAAGKAKQQHQQHHLSPSVQAQERLADFVDLAVVPREAAKKATSRLNGSTPSRDAT-APSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHGPSPSRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPTATTPAGGK 193
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BLAST of mRNA_Ecto-sp13_S_contig14818.3675.1 vs. uniprot
Match: A0A6H5JCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM5_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 6.880e-49
Identity = 149/186 (80.11%), Postives = 151/186 (81.18%), Query Frame = 0 
Query:    1 MTNPGARPRGRPKGSTNKKAATAAGKAKQQHQQHHLSPSVQAQEKLVDFVDLAVVPREAAKKATSRLHGSTPSRDATVAPSSNGKKGRGRPRSIFPSPDNKADGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKKKHGPSPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPV 186
            MTNP  R       STNKKAATAAGKA        LSPSVQAQE+L DFVDLAVVPREAAKKATSRL+GSTPSR AT APS NGKKGRGRPRSIFP P      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AK KHG SPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKP 
Sbjct:    1 MTNPRGRXXXXXXXSTNKKAATAAGKAXXXXXXXXLSPSVQAQERLADFVDLAVVPREAAKKATSRLNGSTPSRAAT-APSFNGKKGRGRPRSIFP-PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHKKAAKNKHGSSPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPT 184
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14818.3675.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPM2_ECTSI9.300e-6689.18Myst-related protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JCM5_9PHAE6.880e-4980.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 85..97
e-value: 1.8
score: 13.8
coord: 6..18
e-value: 4.6
score: 11.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14818contigEcto-sp13_S_contig14818:2936..3929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14818.3675.1mRNA_Ecto-sp13_S_contig14818.3675.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14818 2762..3929 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14818.3675.1 ID=prot_Ecto-sp13_S_contig14818.3675.1|Name=mRNA_Ecto-sp13_S_contig14818.3675.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MTNPGARPRGRPKGSTNKKAATAAGKAKQQHQQHHLSPSVQAQEKLVDFV
DLAVVPREAAKKATSRLHGSTPSRDATVAPSSNGKKGRGRPRSIFPSPDN
KADGGGGGGSSSNSSKKRKAREADESSEEASATGGSRKYHKKTAKKKHGP
SPIRGGTGSYPKRIRNAPDVFKAGPSTKPMSPSKPVTTTPASGKSTS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017956AT_hook_DNA-bd_motif