mRNA_Ecto-sp13_S_contig14790.3652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14790.3652.1
Unique NamemRNA_Ecto-sp13_S_contig14790.3652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14790.3652.1 vs. uniprot
Match: D7FRI7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI7_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 6.920e-85
Identity = 229/345 (66.38%), Postives = 237/345 (68.70%), Query Frame = 1 
Query:  493 ISEVEIYVEVTQTEVFIPAAEAWNDVAADTITTVTPSASWSVAGFGPNMTTDGDDNTVAASYWSCQAPTGTLSSSFGYESSSDYDSCWLYFELNDEYTASYMMLYVHESNDATKEPIQFDVYGCTIDAFSCYNEYANELVGSSTTVPGTPLGEGERVNLIRPSAVSLGIHFNLSAGAIVSISEVELFVQTPDATPTPAPFVPTPETEAPVYSWMNGDDSDDDYVWAXXXXXXXXXXXXXXXXXXXDDTSSSTANDRSGVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADDAADIEDFGNGALARGGLCSRQGLAGAVAVGAMFISFAANTM 1527
            +S+VEIYVEVTQTEVFIPAAEAWNDVAADTITTVTPSASWSVAGFGPNMTT                                                                                   YA+ELVGSSTTVPGTPLGEGERVNLIRP  VSLGIHFNLSAGAIVSISEVELFVQTPDATPTPAPFVPTPETEAPVYSWMNGDDSD      XXXXXXXXXXXXXXXXXXX      TA D +G V+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ADDAADI++FGNGALARGG+CSRQGL G VAVGAMFISFAAN M
Sbjct:   45 LSQVEIYVEVTQTEVFIPAAEAWNDVAADTITTVTPSASWSVAGFGPNMTT-----------------------------------------------------------------------------------YADELVGSSTTVPGTPLGEGERVNLIRPLTVSLGIHFNLSAGAIVSISEVELFVQTPDATPTPAPFVPTPETEAPVYSWMNGDDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATDEAGGVTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDDADDAADIDNFGNGALARGGVCSRQGLVGVVAVGAMFISFAANAM 306
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BLAST of mRNA_Ecto-sp13_S_contig14790.3652.1 vs. uniprot
Match: D7FRI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRI8_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.390e-5
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  298 HESDDATKEAMTMNVYSSYSGYDPAGSFVTVPGTALGAGHRVNLNRPLATS-LTVVPVLSAGQWVDISEVEIYVEV 522
            HESDDAT+ +++ +V     GYD   + +T PGTALGAG RVN+    + + L ++  L++ Q +D+SEVEIY++V
Sbjct:   62 HESDDATQLSISFDVEV---GYDTVHTDLTSPGTALGAGQRVNMPPDASGNYLHLLFDLTSDQAIDVSEVEIYLDV 134
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14790.3652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FRI7_ECTSI6.920e-8566.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRI8_ECTSI4.390e-544.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14790contigEcto-sp13_S_contig14790:150..4282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1530
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionGalactose-binding domain-like
Ec32 orthologEc-09_000110.1
Cds size1530
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14790.3652.1prot_Ecto-sp13_S_contig14790.3652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14790 150..4282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462788.6586404-CDS-Ecto-sp13_S_contig14790:149..2541681462788.6586404-CDS-Ecto-sp13_S_contig14790:149..254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 150..254 +
1681462788.670856-CDS-Ecto-sp13_S_contig14790:1025..12121681462788.670856-CDS-Ecto-sp13_S_contig14790:1025..1212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 1026..1212 +
1681462788.6830113-CDS-Ecto-sp13_S_contig14790:1565..17741681462788.6830113-CDS-Ecto-sp13_S_contig14790:1565..1774Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 1566..1774 +
1681462788.6913862-CDS-Ecto-sp13_S_contig14790:2044..21111681462788.6913862-CDS-Ecto-sp13_S_contig14790:2044..2111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 2045..2111 +
1681462788.7013292-CDS-Ecto-sp13_S_contig14790:2353..24301681462788.7013292-CDS-Ecto-sp13_S_contig14790:2353..2430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 2354..2430 +
1681462788.7113075-CDS-Ecto-sp13_S_contig14790:2592..27521681462788.7113075-CDS-Ecto-sp13_S_contig14790:2592..2752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 2593..2752 +
1681462788.7203138-CDS-Ecto-sp13_S_contig14790:3041..31301681462788.7203138-CDS-Ecto-sp13_S_contig14790:3041..3130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 3042..3130 +
1681462788.7310553-CDS-Ecto-sp13_S_contig14790:3393..35401681462788.7310553-CDS-Ecto-sp13_S_contig14790:3393..3540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 3394..3540 +
1681462788.7400439-CDS-Ecto-sp13_S_contig14790:3724..39441681462788.7400439-CDS-Ecto-sp13_S_contig14790:3724..3944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 3725..3944 +
1681462788.7517233-CDS-Ecto-sp13_S_contig14790:4013..42821681462788.7517233-CDS-Ecto-sp13_S_contig14790:4013..4282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14790 4014..4282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14790.3652.1

>prot_Ecto-sp13_S_contig14790.3652.1 ID=prot_Ecto-sp13_S_contig14790.3652.1|Name=mRNA_Ecto-sp13_S_contig14790.3652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
VKVDTVSNVVAAATFWDLRTDAGCGEAGCDPLLAHDGHNNTVASSRWSCE
SSLDVDVENYVFFSSPQYCQLQFVFGDEGDSVWDDDNLIFTVSHVVIYVH
ESDDATKEAMTMNVYSSYSGYDPAGSFVTVPGTALGAGHRVNLNRPLATS
LTVVPVLSAGQWVDISEVEIYVEVTQTEVFIPAAEAWNDVAADTITTVTP
SASWSVAGFGPNMTTDGDDNTVAASYWSCQAPTGTLSSSFGYESSSDYDS
CWLYFELNDEYTASYMMLYVHESNDATKEPIQFDVYGCTIDAFSCYNEYA
NELVGSSTTVPGTPLGEGERVNLIRPSAVSLGIHFNLSAGAIVSISEVEL
FVQTPDATPTPAPFVPTPETEAPVYSWMNGDDSDDDYVWANDDDDAAGVV
GSSNDDNLVDDTSSSTANDRSGVVSSGDDNLVDDSLSSTADDEAGGVTSG
DDGPAIGLPSSTADDADDAADIEDFGNGALARGGLCSRQGLAGAVAVGAM
FISFAANTM*
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mRNA from alignment at Ecto-sp13_S_contig14790:150..4282+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14790.3652.1 ID=mRNA_Ecto-sp13_S_contig14790.3652.1|Name=mRNA_Ecto-sp13_S_contig14790.3652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14790:150..4282+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAAAGTGGACACCGTCTCCAATGTCGTGGCAGCTGCAACTTTCTGGGA
CTTGAGAACGGATGCAGGCTGTGGGGAGGCTGGTTGCGATCCTCTGCTCG
CACATGTAAGTGGGCATTGACCAGGCGGCTCCTACACTGTTTGGCGGCGA
GGCAGAGTGAAGTCATCATATAAATTCTTGTTATGTCGCCCTCGACACGG
ACGAGCTCACTGGCGCACATGGCGTTTCTTCTACATTTGGAAATCTGTGG
ACTGCCCGCGGACAGTATTAATGCTCTCGCCGACATTGAAACTGACCCGC
CACGCCACAGCGCGTAGAAAAGGTTCACAATTCGTAGCTTCTCTTAAACT
CTTTCATCACGGTTTCCGAAATGACCCTCAACCCTTTGATGGGTGACGGC
ATCAACGGGAGGACGTACCTCGGCGTTGGTCTTCCGCTTCATCCAGCCCC
ACGAACACCACGCACGTACATGCATTGAGTGCTGTCAGCATGCCTCGTCG
CATATCAAACACACGCTGCCTGCTATCGTTCGAAGTTTGGAGACATTTTT
AGCCGTTGGGTTCTCTCGGCAATCTTCGTTAGAACTTGGTTGCGCGGACG
TTGGCAAAGACAACAACAGGCATGCTGTACTATGAAACATGCCCCTCGAA
CTTGGTACTCGCTCCTCTTCATTCGGCTGTCAGGGTGATGGAGCTGTTGC
CGGAACCTGTATGAGGGCATGAACAGTCTATCGCAGCTCACTCGGAAGAG
CGATGCGCCGAGTTTGGTACAACGCCGAAGTTCGCATGGGGCCATGCAAA
CGAATACGCAAAACGCATTAACGCGGTCACATCCACACGCCTCCACTGCG
CCGTCTCCATGCCTGCGCCTCCACAGGACGGCCACAATAACACTGTCGCA
TCTTCAAGGTGGTCTTGCGAGTCTAGCCTGGACGTCGACGTGGAAAATTA
CGTATTTTTCTCAAGCCCTCAATATTGCCAGCTGCAATTCGTGTTCGGGG
ACGAAGGCGACAGTGTCTGGGATGATGACAACCTCATTTTTACTGTTTCG
CACGTCGTGATATGTGAGTTTTTGTCTTTCACTACGTGCACGTTTGGCCA
CACGCTCGTCAAACGCATAGCCGATGGACTCCCCCATGTTCGCTGGCGAA
CTCATCGTCCTCGTCGAACTATTGTGCGGTAGGGGCAGGACTGCTTCCGC
CGCTGCAAGTTTTGATCAGGCACCCACCCGCTGACGGCGCAGTCTTTTGC
CCGTCGTGTTTGAATCGCACATTATGATCCACCGGAATATCCCTTCAGAG
ACGTGGTGTACGTCTCACGCACTACTGATCACACCCACTAGCCCTGCCCG
TGTGCTGCCCGACGGCCCATCGTTCCCCTTCTACTGCATGCTCCTTGAAC
TCTCGTGACTCCTCAGATGTCCACGAGAGCGATGATGCCACCAAGGAAGC
AATGACCATGAACGTGTACAGCAGCTACTCCGGCTATGACCCCGCCGGTT
CTTTTGTGACCGTACCGGGCACAGCGCTCGGGGCCGGTCACAGGGTGAAC
TTGAATCGACCCTTGGCCACGTCGTTGACGGTCGTTCCCGTGCTTTCGGC
AGGACAGTGGGTTGACATCAGTGAGGTTCGTGGGTGGTTATCGGACACGC
TCGCGACCCGTAAGCTCGGAGGGTAGTCTAGCTAGTAGGATGTTTGCGGG
CGGCCCTTCTCCGCCCAGGCCACAGTTTTGTTTACCCCAACCCTGACTGA
AAAATAGACGGGGTGGCCTGTGCTGATCGCAACAACTCGACGGGACTGCT
TGCAGCCATCTCCCTGCGAAATTAATGCAGTCGTGCAAAGTGCTACTTCG
CCCAAACATGCCCAGCTTCACAGGGTGCTTTTCTCTCTTTTTCAGGTGGA
GATCTACGTGGAGGTGACCCAGACCGAGGTGTTCATTCCCGCGGCGGAAG
CCTGGAACGACGGTGAGCACGAACGCGTGCCAGAACTTCATATGAATTTT
GTTGTGATCCGGGGACGTGTGAATTATCCCTATCCTTGACCCACGTGAAA
AGCGTTGCCTCCTTGGTCGCTAGGAGGTTCAATCCCATGCCACATAGACG
GTCGTGCTCGCGACAGTGCAACGCCTGCGCCGGCGGTTTGCCAACTACGC
TCGCCAACCACTAATCCCACCCGCTTGGTCGCTGTGCTTTTTGCTTGTTC
ACAGTGGCCGCTGATACGATCACCACCGTAACTCCGTCCGCCTCCTGGTC
GGTCGCCGGTTTTGGTCCTAACATGACAACGGTGAGCGAACTCGCGGTTT
CCGAGGTGCACCAACCACCGTGTACCATTCGGAGCTGTCCATGACTCTCC
TTGAAACGCGGGAGAGGCTGCTCGTAGTTTCAGCATGCGACAGGCCAGTA
ATCCCACCCTTGTTGCCCGTGACCATTGTGCCGTCAAACACAGGACGGCG
ATGACAATACGGTGGCCGCCTCATATTGGTCATGCCAGGCGCCAACCGGT
ACATTGAGCAGCTCGTTCGGCTACGAGTCCTCGTCCGACTACGACTCCTG
TTGGCTGTATTTCGAGCTGAACGACGAGTACACCGCCTCCTACATGATGC
TATGTACGTGTGTTGCTCACACATAGTGTGCCACGGCTGCCTATCCGTGG
CTGTCAACCATCGTTGGGAGTGCTTGGAGTTGAGTTTTGTTGAGAAGCAC
GATGGCAGCTGGGCGGCCAGTTAGCGCTGACCGATGCGGAGTCCAGTGGG
CATCGTGCTTCTCAACAATCACCAATTTACCGCTCTAGATCCGAGACAGG
AAAAACGTGAATCCTACTTTCGCGGCACCCATGACCGACTCGAGAACGAC
CGTGCCCGGTGCCACTACGCCCACCCCTGCTGACGATCCCAGATGTCCAC
GAGAGCAACGATGCTACCAAGGAGCCCATCCAATTCGACGTGTACGGCTG
CACCATTGACGCGTTCTCCTGCTACAACGAAGTAAGTCAAGCAAATAACG
TAAGACGGCGAAGGTGACACCAACAGAAGAAGCGGCCACGGTCGCCGCCA
GTTTGTGCTGGGTGTCATCTTGGTACGTCACTGGAATAATAGTAGCCTGT
ACCTCTCGCAAACAACCGGGTGCTTCATTTGAATTTACCGGCCCGCGCTG
AGGGGCACTGTGTGGAACGATGTCTTGACTTGGATCCACTCAACAACCGT
ACTCGTCTCTGTTGGGCGCGTTGATGGCCGATCGTTGCCTACAGTACGCT
AACGAGCTCGTCGGGTCATCTACGACCGTTCCCGGCACGCCCCTTGGGGA
GGGCGAGCGGGTCAACCTGATCAGGCCCTCTGCCGTGTCCCTCGGCATCC
ACTTCAATCTGTCGGCTGGAGCGATCGTCAGTATCAGCGAGGTGCGGTGA
TTTGGGCGGCATTGGGCGGATGGACGACGGGTGCTTGGCGTCCTACGATA
TCAACGGAGGAGGCTGGCAGTGATATGATCGTTCCGAAAACATGTTCGTG
TGATTGATACACGCTCGCATGCCGTAACACAACTTGGCAGTAACCGTGTT
GAGCTCGCGCGTCAACAACTATCAGGTGGAGCTGTTCGTTCAGACCCCGG
ATGCGACGCCTACACCAGCCCCGTTCGTCCCCACCCCTGAAACCGAAGCT
CCTGTGTACTCGTGGATGAACGGCGACGACTCCGATGACGATTACGTGTG
GGCGAACGATGACGATGATGCCGCTGGTGTTGTTGGCTCCAGCAACGACG
ACAATCTTGTCGACGACACGTCTTCTTCGACGGCTAACGACAGAAGTGGA
ATTGTTTCCGGCGACGACGACAATCTTGTCGATGATTCGTCGTCTTCGAC
GGCTAACGACAGAGGCGGTGTTGTTTCCAGCGGCGACGACAATCTTGTCG
ATGACTCGTTGTCTTCGACGGCTGACGACGAAGCTGGCGGTGTTACCAGC
GGCGACGATGGTCCTGCCATTGGCTTGCCGTCGTCGACTGCAGATGATGC
AGATGATGCCGCCGACATCGAGGACTTCGGGAACGGCGCGCTTGCGCGCG
GGGGGTTGTGCTCTAGACAGGGCCTTGCGGGCGCAGTGGCGGTCGGCGCG
ATGTTTATCTCGTTCGCTGCAAATACCATGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14790:150..4282+

>mRNA_Ecto-sp13_S_contig14790.3652.1 ID=mRNA_Ecto-sp13_S_contig14790.3652.1|Name=mRNA_Ecto-sp13_S_contig14790.3652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1530bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14790:150..4282+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAAAGTGGACACCGTCTCCAATGTCGTGGCAGCTGCAACTTTCTGGGA
CTTGAGAACGGATGCAGGCTGTGGGGAGGCTGGTTGCGATCCTCTGCTCG
CACATGACGGCCACAATAACACTGTCGCATCTTCAAGGTGGTCTTGCGAG
TCTAGCCTGGACGTCGACGTGGAAAATTACGTATTTTTCTCAAGCCCTCA
ATATTGCCAGCTGCAATTCGTGTTCGGGGACGAAGGCGACAGTGTCTGGG
ATGATGACAACCTCATTTTTACTGTTTCGCACGTCGTGATATATGTCCAC
GAGAGCGATGATGCCACCAAGGAAGCAATGACCATGAACGTGTACAGCAG
CTACTCCGGCTATGACCCCGCCGGTTCTTTTGTGACCGTACCGGGCACAG
CGCTCGGGGCCGGTCACAGGGTGAACTTGAATCGACCCTTGGCCACGTCG
TTGACGGTCGTTCCCGTGCTTTCGGCAGGACAGTGGGTTGACATCAGTGA
GGTGGAGATCTACGTGGAGGTGACCCAGACCGAGGTGTTCATTCCCGCGG
CGGAAGCCTGGAACGACGTGGCCGCTGATACGATCACCACCGTAACTCCG
TCCGCCTCCTGGTCGGTCGCCGGTTTTGGTCCTAACATGACAACGGACGG
CGATGACAATACGGTGGCCGCCTCATATTGGTCATGCCAGGCGCCAACCG
GTACATTGAGCAGCTCGTTCGGCTACGAGTCCTCGTCCGACTACGACTCC
TGTTGGCTGTATTTCGAGCTGAACGACGAGTACACCGCCTCCTACATGAT
GCTATATGTCCACGAGAGCAACGATGCTACCAAGGAGCCCATCCAATTCG
ACGTGTACGGCTGCACCATTGACGCGTTCTCCTGCTACAACGAATACGCT
AACGAGCTCGTCGGGTCATCTACGACCGTTCCCGGCACGCCCCTTGGGGA
GGGCGAGCGGGTCAACCTGATCAGGCCCTCTGCCGTGTCCCTCGGCATCC
ACTTCAATCTGTCGGCTGGAGCGATCGTCAGTATCAGCGAGGTGGAGCTG
TTCGTTCAGACCCCGGATGCGACGCCTACACCAGCCCCGTTCGTCCCCAC
CCCTGAAACCGAAGCTCCTGTGTACTCGTGGATGAACGGCGACGACTCCG
ATGACGATTACGTGTGGGCGAACGATGACGATGATGCCGCTGGTGTTGTT
GGCTCCAGCAACGACGACAATCTTGTCGACGACACGTCTTCTTCGACGGC
TAACGACAGAAGCGGTGTTGTTTCCAGCGGCGACGACAATCTTGTCGATG
ACTCGTTGTCTTCGACGGCTGACGACGAAGCTGGCGGTGTTACCAGCGGC
GACGATGGTCCTGCCATTGGCTTGCCGTCGTCGACTGCAGATGATGCAGA
TGATGCCGCCGACATCGAGGACTTCGGGAACGGCGCGCTTGCGCGCGGGG
GGTTGTGCTCTAGACAGGGCCTTGCGGGCGCAGTGGCGGTCGGCGCGATG
TTTATCTCGTTCGCTGCAAATACCATGTAA
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