mRNA_Ecto-sp13_S_contig14770.3642.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14770.3642.1
Unique NamemRNA_Ecto-sp13_S_contig14770.3642.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14770.3642.1 vs. uniprot
Match: D7G8H9_ECTSI (VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H9_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.520e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 KSDAAWRLDVGNDTTVEVDESTSYIRRHQSRSLTDGNTSLPDEPLRASGSNVVVNTTQPVVTGVYGINGNG 213
            KSDAAWRLDVGNDTTVEVDESTSYIRRHQSRSLTDGNTSLPDEPLRASGSN+VVNTTQPVVTGVYG+NGNG
Sbjct: 1032 KSDAAWRLDVGNDTTVEVDESTSYIRRHQSRSLTDGNTSLPDEPLRASGSNIVVNTTQPVVTGVYGVNGNG 1102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14770.3642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H9_ECTSI2.520e-3597.18VCBS protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14770contigEcto-sp13_S_contig14770:1457..2990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score142.5
Seed ortholog evalue2.1e-31
Seed eggNOG ortholog2880.D7G8H9
Model size586
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CN6T@1,2QU8Z@2759
Cds size582
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.9200597-CDS-Ecto-sp13_S_contig14770:1458..14921681462787.9200597-CDS-Ecto-sp13_S_contig14770:1458..1492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14770 1459..1492 -
1681462787.9316573-CDS-Ecto-sp13_S_contig14770:1879..22161681462787.9316573-CDS-Ecto-sp13_S_contig14770:1879..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14770 1880..2216 -
1681462787.9409857-CDS-Ecto-sp13_S_contig14770:2779..29901681462787.9409857-CDS-Ecto-sp13_S_contig14770:2779..2990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14770 2780..2990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14770.3642.1prot_Ecto-sp13_S_contig14770.3642.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14770 1459..2990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14770.3642.1

>prot_Ecto-sp13_S_contig14770.3642.1 ID=prot_Ecto-sp13_S_contig14770.3642.1|Name=mRNA_Ecto-sp13_S_contig14770.3642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=194bp
KSDAAWRLDVGNDTTVEVDESTSYIRRHQSRSLTDGNTSLPDEPLRASGS
NVVVNTTQPVVTGVYGINGNGPFGYNQEVEIRVDFSLPVTVPEVEETAST
TTTTTASAATTDEPSIPVLSVVIGSTSTARMTTYLTAAAIYTTEDVSSTD
ATSSALPNASLHNSTSVLLKYLVAADDESVDLRHLDSSSLVGDI
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mRNA from alignment at Ecto-sp13_S_contig14770:1457..2990-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14770.3642.1 ID=mRNA_Ecto-sp13_S_contig14770.3642.1|Name=mRNA_Ecto-sp13_S_contig14770.3642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1534bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14770:1457..2990- (Ectocarpus species13 EcNAP12_S_4_19m)
AAATCTGACGCGGCCTGGCGCTTGGATGTCGGGAACGACACGACCGTTGA
GGTTGATGAATCCACGTCGTACATCAGGCGCCACCAGTCCAGGAGCCTTA
CAGACGGTAACACGAGCCTACCGGACGAGCCGCTACGAGCGAGCGGGAGC
AATGTCGTCGTCAACACAACGCAGCCCGTGGTCACCGGCGTATACGGTAT
AAACGGCAACGGTAAGAGGGCACGAGGTGGACGGGGCGAGGTGTAATTGT
GGCCATGCACACGCAGTAGTCTTTGCAAACAAACCTCGGGGAAGCGAAGA
AAGATAGGGTGAGACAGATGGCACAGGAGAGAGCGATGGGTGGAGAGAGA
GAGAAACAGAGAGAGGAGAAAGAGAGAGAGAGAGAGACAGAGAGAGAGAG
ACAGAGAGAGAAAGAGAGAGAGATAAATGGAGAAGACGCTACGCCTCATG
AACTTGNNNNNNNNNNAGAAAAAAGAAAAGAAAAGAAAGAAAAAAAAAGA
GAAGGAGAGGAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGCAGTTCACATCAACGATCC
AGACCAGCATCTTGTACCGATAGACAACAAGAACCCACACCAGTGAATGA
CGAGCCCCATTGGTTCGTGTGACCAGAAAACCACGCAGGACACATGCCTA
ACAACAACGAGAGAAAAATGAACAAGCCCCGTAGAGAAACTGTGCGTGCA
CCGTTGTCTTGTGCCGACGAGCAGGACCCTTCGGATACAACCAAGAAGTT
GAAATCCGGGTCGACTTTTCGCTTCCGGTAACGGTTCCCGAAGTCGAAGA
GACTGCTTCTACCACTACCACCACCACTGCTTCGGCAGCTACAACAGACG
AGCCATCGATACCGGTGCTTTCGGTCGTCATCGGATCGACGTCGACGGCG
AGGATGACAACGTACCTAACGGCGGCCGCTATATATACGACGGAAGACGT
GTCGTCCACTGACGCTACCTCATCAGCACTACCGAACGCCTCGCTACACA
ACTCCACTTCGGTGCTTTTAAAGTACCTGGTGGCCGCGGACGATGAGTCG
GTCGACCTCAGGTATCACACAAAAAGCTCATTCCTTCAGGGATAACCTGT
TAATTGCGTACCGTGTGTTGCATGCGTGATCGAACCTTGCTCTCGAATAG
TTCTTGATGCTGCGGTAGGGGGGTGCAATTTTTGGGTGAAATCTTACACG
TTTGGGAGAAAACGTGTACCGTAGTCCTGTCCGGTGATCGTACAGCGAAA
CAGGACGCGCCCAATAGGTTAACAAAGGGTGTGTCTCCTTACTCACCCGA
AAGTGTAAGACGAGTTGACCCCCTACCGTAGCATCACTACGATGTGAAGT
TGTAGGAAGATAAGCTACCCCCGACAACGCCCGGCACAGTTACCCCTTTT
CTCAATGACTCCGGTGTCCTCTTTCCGAACGGCTGCACTTGTTCGCAGAC
ACCTCGACTCGTCCTCTCTTGTGGGGGATATCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14770:1457..2990-

>mRNA_Ecto-sp13_S_contig14770.3642.1 ID=mRNA_Ecto-sp13_S_contig14770.3642.1|Name=mRNA_Ecto-sp13_S_contig14770.3642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14770:1457..2990- (Ectocarpus species13 EcNAP12_S_4_19m)
AAATCTGACGCGGCCTGGCGCTTGGATGTCGGGAACGACACGACCGTTGA
GGTTGATGAATCCACGTCGTACATCAGGCGCCACCAGTCCAGGAGCCTTA
CAGACGGTAACACGAGCCTACCGGACGAGCCGCTACGAGCGAGCGGGAGC
AATGTCGTCGTCAACACAACGCAGCCCGTGGTCACCGGCGTATACGGTAT
AAACGGCAACGGACCCTTCGGATACAACCAAGAAGTTGAAATCCGGGTCG
ACTTTTCGCTTCCGGTAACGGTTCCCGAAGTCGAAGAGACTGCTTCTACC
ACTACCACCACCACTGCTTCGGCAGCTACAACAGACGAGCCATCGATACC
GGTGCTTTCGGTCGTCATCGGATCGACGTCGACGGCGAGGATGACAACGT
ACCTAACGGCGGCCGCTATATATACGACGGAAGACGTGTCGTCCACTGAC
GCTACCTCATCAGCACTACCGAACGCCTCGCTACACAACTCCACTTCGGT
GCTTTTAAAGTACCTGGTGGCCGCGGACGATGAGTCGGTCGACCTCAGAC
ACCTCGACTCGTCCTCTCTTGTGGGGGATATC
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