mRNA_Ecto-sp13_S_contig14752.3632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14752.3632.1
Unique NamemRNA_Ecto-sp13_S_contig14752.3632.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A6H5J9H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H6_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 7.610e-31
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 391
            FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK
Sbjct:  224 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 281          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: D7G1M8_ECTSI (Amino acid/peptide transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1M8_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 3.830e-30
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 391
            FYWSINLGALVSFTLVSYVCQYGL FLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK
Sbjct:   56 FYWSINLGALVSFTLVSYVCQYGLSFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 113          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A7R9UH25_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH25_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.490e-19
Identity = 37/58 (63.79%), Postives = 49/58 (84.48%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 391
            FYWSINLGAL+S+TLV+Y+CQYG+  LGG DWGF  G+ IP ++M+LA++ F +GTPK
Sbjct:  129 FYWSINLGALISYTLVAYICQYGIAGLGGEDWGFFIGFIIPAVSMALAILAFYSGTPK 186          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A482UWI9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWI9_9ARCH)

HSP 1 Score: 83.2 bits (204), Expect = 5.710e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 2
Query:  215 RFYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAM 352
            RFYWSINLG+L+S+TLV+Y+CQYGLPFLGG  WGF  GY IP I M
Sbjct:   80 RFYWSINLGSLISYTLVAYICQYGLPFLGGEKWGFFVGYCIPAIMM 125          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A7S3GU63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU63_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 9.830e-17
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 391
            FYWSINLGAL+++T+V+Y+CQYGLP LGG  WGF  GY IP I + + + VF++ T K
Sbjct:  164 FYWSINLGALLAYTIVAYICQYGLPGLGGETWGFFVGYLIPTIFLGIGIAVFMSATTK 221          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A835YK04_9STRA (POT family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK04_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.020e-16
Identity = 35/58 (60.34%), Postives = 50/58 (86.21%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK 391
            FY SINLGAL+S++LV+Y+CQYG+  LGG  WGF  G++IPCIAM++A+V+F+AG+ +
Sbjct:  111 FYGSINLGALISYSLVAYICQYGVGGLGGEPWGFTVGFTIPCIAMAIAIVLFVAGSRR 168          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A258AGE5_9GAMM (Uncharacterized protein n=1 Tax=Pseudomonadales bacterium 32-42-5 TaxID=1970543 RepID=A0A258AGE5_9GAMM)

HSP 1 Score: 77.8 bits (190), Expect = 4.270e-15
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 2
Query:  215 RFYWSINLGALVSFTLVSYVCQYGL-PFLGGPDWGFMAGYSIPCIAMSLALVVF 373
            RFYWSINLGAL+S+TLV+Y+CQYG  P LGG  WGF  GY+IP I MS  L  F
Sbjct:   72 RFYWSINLGALISYTLVAYICQYGAGPDLGGEKWGFFVGYTIPSIMMSKFLFCF 125          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: W7TJG8_9STRA (Peptide transporter ptr1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJG8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.020e-6
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAG 382
            FY +IN GAL+SFTLV  + QYG+ ++GG D+ F  G+S+  I  +  + +FL G
Sbjct:  221 FYAAINCGALISFTLVVSITQYGVSWIGGMDYRFSVGFSVAAIITTCGIAIFLFG 275          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A8C0FLQ1_BUBBB (Solute carrier family 15 member 3 n=1 Tax=Bubo bubo TaxID=30461 RepID=A0A8C0FLQ1_BUBBB)

HSP 1 Score: 53.1 bits (126), Expect = 1.500e-5
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTP 388
            FYWSIN+GA+ S  LV++V Q         + GF+AGY IP   ++LAL++FL  TP
Sbjct:   26 FYWSINVGAIFSLLLVTFVQQ---------NIGFLAGYLIPVACLALALLIFLLATP 73          
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Match: A0A8C0FCD2_BUBBB (Solute carrier family 15 member 3 n=1 Tax=Bubo bubo TaxID=30461 RepID=A0A8C0FCD2_BUBBB)

HSP 1 Score: 53.1 bits (126), Expect = 1.550e-5
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 2
Query:  218 FYWSINLGALVSFTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTP 388
            FYWSIN+GA+ S  LV++V Q         + GF+AGY IP   ++LAL++FL  TP
Sbjct:  156 FYWSINVGAIFSLLLVTFVQQ---------NIGFLAGYLIPVACLALALLIFLLATP 203          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14752.3632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5J9H6_9PHAE7.610e-31100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1M8_ECTSI3.830e-3098.28Amino acid/peptide transporter n=1 Tax=Ectocarpus ... [more]
A0A7R9UH25_9STRA5.490e-1963.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A482UWI9_9ARCH5.710e-1873.91Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3GU63_9STRA9.830e-1758.62Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YK04_9STRA2.020e-1660.34POT family-domain-containing protein n=1 Tax=Tribo... [more]
A0A258AGE5_9GAMM4.270e-1566.67Uncharacterized protein n=1 Tax=Pseudomonadales ba... [more]
W7TJG8_9STRA1.020e-645.45Peptide transporter ptr1 n=1 Tax=Nannochloropsis g... [more]
A0A8C0FLQ1_BUBBB1.500e-547.37Solute carrier family 15 member 3 n=1 Tax=Bubo bub... [more]
A0A8C0FCD2_BUBBB1.550e-547.37Solute carrier family 15 member 3 n=1 Tax=Bubo bub... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14752contigEcto-sp13_S_contig14752:1797..2448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score121.7
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7G1M8
Model size394
KEGG koko:K14638,ko:K14639
KEGG TC2.A.17.3
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.oligopeptide transport
EggNOG OGsCOG3104@1,KOG1237@2759
Cds size291
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.222732-CDS-Ecto-sp13_S_contig14752:1796..20631681462787.222732-CDS-Ecto-sp13_S_contig14752:1796..2063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14752 1797..2063 -
1681462787.2349513-CDS-Ecto-sp13_S_contig14752:2321..23451681462787.2349513-CDS-Ecto-sp13_S_contig14752:2321..2345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14752 2322..2345 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462787.2445707-UTR-Ecto-sp13_S_contig14752:2345..24481681462787.2445707-UTR-Ecto-sp13_S_contig14752:2345..2448Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14752 2346..2448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14752.3632.1prot_Ecto-sp13_S_contig14752.3632.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14752 1797..2345 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14752.3632.1

>prot_Ecto-sp13_S_contig14752.3632.1 ID=prot_Ecto-sp13_S_contig14752.3632.1|Name=mRNA_Ecto-sp13_S_contig14752.3632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MLWFLLFSQQIHHHQQQQQQHHPHHQQQQPTTNDSACRFYWSINLGALVS
FTLVSYVCQYGLPFLGGPDWGFMAGYSIPCIAMSLALVVFLAGTPK*
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mRNA from alignment at Ecto-sp13_S_contig14752:1797..2448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14752.3632.1 ID=mRNA_Ecto-sp13_S_contig14752.3632.1|Name=mRNA_Ecto-sp13_S_contig14752.3632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=652bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14752:1797..2448- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGAGCGTCTTCGGGGCGGATCAGTTCGACGAAGACGACCCGGCAGACGT GAAGGAGAAGCAGTCTTTCTTCAATTGGTGAGCTCGTGGTTTGGTGTTGT AGCATGCTTTGGTTTTTGTTGTTTTCTGTCATTTTCTGGGGGGTGTTTTG GTTTTGTTTGGAGTTGTTTTGCGTAGCCTTCGTGGCTGGGGAAGGGTCGC TCTCTGTGTTGTTGGTTTACACCTTTCCTCACTTCACCCAGTAAGGATTT TAGACGTACAGTTCTCAGTAGAGGCGTTAGCGCGCCGTTTTTCGATGTGC AGCCAACAATGGCGAGTAGCTACTACAACGACAGCAGCAGCAGCAGTAGC AGCAGTAGCAGCAGCAACAACCACAGCAACACCAGCAACAAATACACCAC CACCAACAACAACAACAACAACACCACCCACATCACCAACAACAACAACC AACAACCAACGATTCCGCCTGCAGGTTTTACTGGAGCATAAATCTCGGGG CCTTGGTGAGCTTCACTCTTGTGTCGTACGTGTGCCAGTACGGGCTGCCG TTTCTAGGGGGGCCGGACTGGGGCTTCATGGCGGGATACTCCATTCCCTG CATCGCCATGTCCCTGGCGCTAGTGGTCTTCTTGGCGGGGACACCCAAGT AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14752:1797..2448-

>mRNA_Ecto-sp13_S_contig14752.3632.1 ID=mRNA_Ecto-sp13_S_contig14752.3632.1|Name=mRNA_Ecto-sp13_S_contig14752.3632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14752:1797..2448- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTTGGTTTTTGTTGTTTTCTCAACAAATACACCACCACCAACAACA
ACAACAACAACACCACCCACATCACCAACAACAACAACCAACAACCAACG
ATTCCGCCTGCAGGTTTTACTGGAGCATAAATCTCGGGGCCTTGGTGAGC
TTCACTCTTGTGTCGTACGTGTGCCAGTACGGGCTGCCGTTTCTAGGGGG
GCCGGACTGGGGCTTCATGGCGGGATACTCCATTCCCTGCATCGCCATGT
CCCTGGCGCTAGTGGTCTTCTTGGCGGGGACACCCAAGTAA
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