mRNA_Ecto-sp13_S_contig14745.3628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A6H5JYV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV6_9PHAE) HSP 1 Score: 364 bits (935), Expect = 1.790e-122 Identity = 208/248 (83.87%), Postives = 209/248 (84.27%), Query Frame = 1
Query: 1 RCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVAAARAKLPRAAVDESDXXXXXXXXXXXXXXXXXXXXXGDIDXXXXXXXDDSSGKKRHTXXXXXXXXXXXXXXXXXXXXXXDADWLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQ 744
RCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVA A KLPRAAVDESD GDID DDS G K XXXXXXXXXXXXXXXXXXXX ADWLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELI+KRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQ
Sbjct: 32 RCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVADAGTKLPRAAVDESDYDHHHGGTDVGARSSSNATDNGDIDSSDNGDGDDSIGNKPPATGXXXXXXXXXXXXXXXXXXXX-ADWLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIIKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQ 278
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: D8LDP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP6_ECTSI) HSP 1 Score: 349 bits (896), Expect = 1.880e-118 Identity = 201/248 (81.05%), Postives = 204/248 (82.26%), Query Frame = 1
Query: 1 RCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVAAARAKLPRAAVDESDXXXXXXXXXXXXXXXXXXXXXGDIDXXXXXXXDDSSGKKRHTXXXXXXXXXXXXXXXXXXXXXXDADWLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQ 744
RCIRATL GPLARKHFQAMSVARWGEGCRCQYAVAAA KLPRAA D SD GD D D SG K HT XXXXXXXXXXXXXXXXXXX ADWLAFYLRRVGHRAARPSPLNLLQEHY +DAY LLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLG+LRKTLLPLGLNRELI+KRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQ
Sbjct: 32 RCIRATLVGPLARKHFQAMSVARWGEGCRCQYAVAAAGTKLPRAAADGSDFDHHHGGTGAGARNSYAADN-GDGD-------DVRSGDKPHTTGNXXXXXXXXXXXXXXXXXXXXADWLAFYLRRVGHRAARPSPLNLLQEHYAKDAYHLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGDLRKTLLPLGLNRELIIKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHRPGNQ 271
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A835ZF17_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF17_9STRA) HSP 1 Score: 154 bits (388), Expect = 2.840e-42 Identity = 75/126 (59.52%), Postives = 89/126 (70.63%), Query Frame = 1
Query: 352 WLAFYLRRVGHRAARP--SPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLG 723
W A+YLRRV H AARP SPL+L+QE + +A+ LL+ LCSRTSGG V+ + AF E PTP SVL+AD LR LLPLGLNRE + RFA F W DPSELHGCG+ A+DSW+IFCLG
Sbjct: 33 WSAYYLRRVSHVAARPPLSPLDLVQERHARNAFTLLASVQLCSRTSGGALVRGVIDAFMELYPTPQSVLSADAAALRALLLPLGLNRERTLARFALEFATKPWRDPSELHGCGKLAADSWRIFCLG 158
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A7S2PHI3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PHI3_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.120e-35 Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 352 WLAFYLRRVGHRAA--RPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHR 732
W +Y R + S L+L+QE Y D Y+LLS CILCSRTSG V+D VKAFFE TP+ +L+ D+ + K L PLGLNRE MK+FA+GFL W SELHGCG FAS S+ IFC G+ +
Sbjct: 31 WYEYYRHRCSWMPLPRQKSKLDLIQEDYGHDPYKLLSACILCSRTSGSQNVRDVVKAFFEKYKTPSDILSGDIATIEKELKPLGLNREKTMKKFAQGFLRP-WTQVSELHGCGAFASSSFDIFCRGDFK 158
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: K0R6H7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R6H7_THAOC) HSP 1 Score: 128 bits (322), Expect = 2.740e-32 Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 1
Query: 349 DWLAFYLRRVGHRA--ARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDP--SELHGCGRFASDSWQIFCLGNHR 732
DW ++ R + SPL+L+QE Y +D +R+LS CIL SRTSGG ++ + FFEA P+PT+V+ D ++ L PLGLNRE MKRFA FL+ W D S LHGCG FA +SW +FC G ++
Sbjct: 95 DWYKYFCNRSASARLPSECSPLDLIQERYADDPFRMLSSCILASRTSGGFIIRRVISDFFEAYPSPTAVINGDTNDMATMLHPLGLNRERTMKRFAIDFLSPEWTDGRVSRLHGCGNFAQNSWDVFCHGRYQ 226
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A5A8DJ41_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DJ41_CAFRO) HSP 1 Score: 118 bits (295), Expect = 1.560e-29 Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 400 SPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVL----AADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHR 732
SP+ + QE Y D ++LLS C+L SRTSGGD V ++AFFE PTPT+VL A L + + L PLGLNRE + R AEGFL W PSEL+GCG+FA DSW FC G R
Sbjct: 3 SPMKMFQETYGYDPWKLLSGCVLSSRTSGGDRVWGPIRAFFERFPTPTAVLDEAEANGLAGMEEMLKPLGLNRERTITRAAEGFLR-VWDRPSELYGCGKFAEDSWLAFCHGEVR 116
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A7S4MVC1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVC1_9STRA) HSP 1 Score: 125 bits (314), Expect = 2.480e-29 Identity = 63/131 (48.09%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 349 DWLAFYLRRVGHRAARP---SPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHR 732
+W +Y R R P SPL+L+QE + DA+ LLS CILCSRTSG D ++ ++ F TPT V+ AD LR+ LLPLGLNRE ++RFA FL+ W S+LHGCG FA S ++FC G R
Sbjct: 100 EWFRYYRLRASLRWDMPPVSSPLDLIQERHRSDAWSLLSTCILCSRTSGSDKIRSSIAEFHATYRTPTDVVRADESILREMLLPLGLNRERTLRRFAIEFLSLEWRHVSDLHGCGAFADASHRVFCRGKWR 230
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A5A8D4V5_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D4V5_CAFRO) HSP 1 Score: 118 bits (295), Expect = 1.430e-28 Identity = 62/115 (53.91%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 400 SPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVL----AADLGELRKTLLPLGLNRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLGNHR 732
SP+ + QE Y D ++LLS C+L SRTSGGD V ++AFFE PTPT+VL A L + + L PLGLNRE + R AEGFL W PSEL+GCG+FA DSW FC G R
Sbjct: 3 SPMKMFQETYGYDPWKLLSGCVLSSRTSGGDRVWGPIRAFFERFPTPTAVLDEAEANGLAGMEEMLKPLGLNRERTITRAAEGFLR-VWDRPSELYGCGKFAEDSWLAFCHGEVR 116
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A2P6VFC8_9CHLO (DNA glycosylase isoform A n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFC8_9CHLO) HSP 1 Score: 119 bits (297), Expect = 1.770e-28 Identity = 56/126 (44.44%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 352 WLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGL--NRELIMKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLG 723
W A+ R+ + PSPL+L+QEH+T+ ++ + C+LCSRT+GG V+ A++ F PTP+ VLAA L + PLGL +R ++ A GFLA+ W +PS+ HGCG+F SDS+ IFC G
Sbjct: 64 WAAWTKHRLCAASHPPSPLDLIQEHFTDCPFQHMVACVLCSRTTGGPVVRQAIQLFLLLYPTPSDVLAAGDDSLLAVMHPLGLGASRLAAVRSIAHGFLATDWQEPSQFHGCGKFVSDSYHIFCRG 189
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Match: A0A383WAV0_TETOB (F-box domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WAV0_TETOB) HSP 1 Score: 114 bits (284), Expect = 7.170e-26 Identity = 54/126 (42.86%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 352 WLAFYLRRVGHRAARPSPLNLLQEHYTEDAYRLLSCCILCSRTSGGDTVKDAVKAFFEACPTPTSVLAADLGELRKTLLPLGLNRELI--MKRFAEGFLASAWHDPSELHGCGRFASDSWQIFCLG 723
W + +R+ + R SPL+LLQE Y D + ++CC+LCSRTSG T++ + FF+A P+P++ L + L PLGL + + ++ A+GFL + W DPSE GCG+F SDSW+IFC G
Sbjct: 113 WQHYCCKRMSLKTIRSSPLSLLQEAYP-DPWMHITCCVLCSRTSGSATIRSCIARFFQAFPSPSACLQGCPQAMAVLLHPLGLMQARLAAVRAVAQGFLGTDWQDPSEFKGCGKFVSDSWRIFCKG 237 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14745.3628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14745.3628.1 >prot_Ecto-sp13_S_contig14745.3628.1 ID=prot_Ecto-sp13_S_contig14745.3628.1|Name=mRNA_Ecto-sp13_S_contig14745.3628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=248bp RCIRATLAGPLARKHFQAMSVARWGEGCRCQYAVAAARAKLPRAAVDESDback to top mRNA from alignment at Ecto-sp13_S_contig14745:2319..3658- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14745.3628.1 ID=mRNA_Ecto-sp13_S_contig14745.3628.1|Name=mRNA_Ecto-sp13_S_contig14745.3628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1340bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14745:2319..3658- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14745:2319..3658- >mRNA_Ecto-sp13_S_contig14745.3628.1 ID=mRNA_Ecto-sp13_S_contig14745.3628.1|Name=mRNA_Ecto-sp13_S_contig14745.3628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14745:2319..3658- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |