mRNA_Ecto-sp13_S_contig1474.3625.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1474.3625.1
Unique NamemRNA_Ecto-sp13_S_contig1474.3625.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: D8LSS1_ECTSI (CENP-V/GFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.800e-49
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    1 MAETKRTLTCWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRCK 231
            MAETKRTLTCWCG+VEMELVG PLASLHCHC ICQKWSGAPFQWLVLYKADKTS+VKGKDNITITRTSEDMERGRCK
Sbjct:    1 MAETKRTLTCWCGDVEMELVGAPLASLHCHCVICQKWSGAPFQWLVLYKADKTSVVKGKDNITITRTSEDMERGRCK 77
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A356PWU1_9PROT (Aldehyde-activating protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A356PWU1_9PROT)

HSP 1 Score: 61.6 bits (148), Expect = 5.380e-10
Identity = 25/68 (36.76%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   25 TCWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRC 228
            +C+CG VE+E+VG  +A L CHC +C+ WS  P     L++ +   I KG D++     +E  +R  C
Sbjct:   15 SCFCGEVEVEIVGAAVAQLVCHCTVCRSWSATPMTGATLFRPEDVRITKGADSLRRYARNEGHDRCFC 82
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: UPI001B1F3903 (GFA family protein n=1 Tax=Caulobacter sp. TaxID=78 RepID=UPI001B1F3903)

HSP 1 Score: 60.8 bits (146), Expect = 8.760e-10
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   25 TCWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRC 228
            +C+CG V++E+VG P A  +CHC  C+ WSG P     L+K D   +V G D +   + +   +R  C
Sbjct:    6 SCFCGTVQVEVVGQPEAMGYCHCRSCRSWSGGPVNAFSLWKPDAVRVVSGSDELATYQKTAMSQRRYC 73
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A1Z8ACV5_9RHOB (Aldehyde-activating protein n=1 Tax=Rhodobacterales bacterium 52_120_T64 TaxID=1856301 RepID=A0A1Z8ACV5_9RHOB)

HSP 1 Score: 60.5 bits (145), Expect = 1.290e-9
Identity = 23/68 (33.82%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   25 TCWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRC 228
            +C+CG V++E+ G+P    +CHC  C+ WS  P     L+K +  S+VKG D +     + + +R  C
Sbjct:    8 SCFCGEVQIEVEGVPEGMGYCHCASCRSWSAGPVNTFTLWKPEAVSVVKGADKLATFEKTPNSQRQFC 75
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A1F3AJ01_9PROT (Aldehyde-activating protein n=1 Tax=Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_63_12 TaxID=1797224 RepID=A0A1F3AJ01_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 3.530e-9
Identity = 26/69 (37.68%), Postives = 37/69 (53.62%), Query Frame = 1 
Query:   28 CWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRCKA 234
            C CG VE+ L G P+   +CHC  C+ W GAP      +   +   VKG DN+T  + +E+  R  CK+
Sbjct:    8 CACGAVEIALSGSPVLQCYCHCSDCRDWLGAPVHGATGWPKAQVRWVKGADNVTTYKRTENSHRKSCKS 76
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A0D6P6Q1_9PROT (Glutathione-dependent formaldehyde-activating protein n=1 Tax=Acidisphaera rubrifaciens HS-AP3 TaxID=1231350 RepID=A0A0D6P6Q1_9PROT)

HSP 1 Score: 59.3 bits (142), Expect = 3.600e-9
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:   28 CWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRCK 231
            C+CG VE+E+ G P+A  +CHC  C+ WS +P     L+  D   + +G +NI     +E   R  CK
Sbjct:    9 CFCGAVEIEVTGAPVAMGYCHCESCRSWSASPLNAFSLWSPDALKVTRGAENIGEYHKTEMSHRQFCK 76
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A2W4CFI2_9HYPH (Aldehyde-activating protein n=1 Tax=Rhizobium tubonense TaxID=484088 RepID=A0A2W4CFI2_9HYPH)

HSP 1 Score: 57.8 bits (138), Expect = 1.470e-8
Identity = 24/67 (35.82%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:   28 CWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRC 228
            C+CG VE+E+ G P+A  +CHC  C++WS  P     L+  D  S+ KG  ++   + +E   R  C
Sbjct:   11 CFCGAVEVEVAGEPVAMGYCHCDSCREWSAGPVNAFTLWPPDAVSVTKGAGHVASYQKTETSIRKWC 77
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A3N4INM7_ASCIM (CENP-V/GFA domain-containing protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4INM7_ASCIM)

HSP 1 Score: 58.5 bits (140), Expect = 1.790e-8
Identity = 30/85 (35.29%), Postives = 44/85 (51.76%), Query Frame = 1 
Query:    7 ETKRTLTCWCGNVEMELVGL-PLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRCKASRWPLRAC 258
            E K    C+C  V+ ++    PL+S  CHC +CQK  GAP+QW  +   D     +G DN+   RT+E+ ER  C   +   + C
Sbjct:   40 EPKLHGACYCKAVKFDIDRTEPLSSKFCHCRVCQKLHGAPYQWASIIPKDSLHFTEGHDNLQFYRTTEN-ERAYCPPHKVLCKKC 123
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: A0A7W5BVH2_9GAMM (CENP-V/GFA domain-containing protein n=1 Tax=Halomonas organivorans TaxID=257772 RepID=A0A7W5BVH2_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.110e-7
Identity = 25/72 (34.72%), Postives = 37/72 (51.39%), Query Frame = 1 
Query:   28 CWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRCKASRW 243
            C+CG V++E+VG P A  +CHC  C+ WS  P     L+K D   I +G++ +      E  E+      RW
Sbjct:    9 CFCGAVQVEVVGKPEAMGYCHCDSCRHWSAGPVNAFTLWKPDAVRITQGEEAL------ESFEKTPASRRRW 74
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BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Match: UPI001E5609CD (GFA family protein n=1 Tax=Lysobacter sp. KIS68-7 TaxID=2904252 RepID=UPI001E5609CD)

HSP 1 Score: 54.7 bits (130), Expect = 2.190e-7
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 1 
Query:    1 MAETKRTLTCWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKADKTSIVKGKDNITITRTSEDMERGRC 228
            M++T R   C+CG VE+E  G P+A   CHC  C+ WS AP     L++ D   + +G + +     ++  +R  C
Sbjct:    1 MSDTYRG-ACFCGAVEVETTGAPVAMGFCHCNSCRSWSAAPVNAFTLWQPDAVRVTRGAEFVGHFSKTDFSDRQYC 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1474.3625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LSS1_ECTSI1.800e-4994.81CENP-V/GFA domain-containing protein n=2 Tax=Ectoc... [more]
A0A356PWU1_9PROT5.380e-1036.76Aldehyde-activating protein n=1 Tax=Alphaproteobac... [more]
UPI001B1F39038.760e-1036.76GFA family protein n=1 Tax=Caulobacter sp. TaxID=7... [more]
A0A1Z8ACV5_9RHOB1.290e-933.82Aldehyde-activating protein n=1 Tax=Rhodobacterale... [more]
A0A1F3AJ01_9PROT3.530e-937.68Aldehyde-activating protein n=1 Tax=Alphaproteobac... [more]
A0A0D6P6Q1_9PROT3.600e-936.76Glutathione-dependent formaldehyde-activating prot... [more]
A0A2W4CFI2_9HYPH1.470e-835.82Aldehyde-activating protein n=1 Tax=Rhizobium tubo... [more]
A0A3N4INM7_ASCIM1.790e-835.29CENP-V/GFA domain-containing protein n=1 Tax=Ascob... [more]
A0A7W5BVH2_9GAMM1.110e-734.72CENP-V/GFA domain-containing protein n=1 Tax=Halom... [more]
UPI001E5609CD2.190e-732.89GFA family protein n=1 Tax=Lysobacter sp. KIS68-7 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1474contigEcto-sp13_S_contig1474:2407..4336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score162.2
Seed ortholog evalue1.1e-37
Seed eggNOG ortholog2880.D8LSS1
Model size261
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Glutathione-dependent formaldehyde-activating enzyme
EggNOG OGs2AVC1@1,2RZVZ@2759
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462786.8047707-CDS-Ecto-sp13_S_contig1474:2406..24901681462786.8047707-CDS-Ecto-sp13_S_contig1474:2406..2490Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1474 2407..2490 +
1681462786.8146307-CDS-Ecto-sp13_S_contig1474:4159..43361681462786.8146307-CDS-Ecto-sp13_S_contig1474:4159..4336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1474 4160..4336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1474.3625.1prot_Ecto-sp13_S_contig1474.3625.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1474 2407..4336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1474.3625.1

>prot_Ecto-sp13_S_contig1474.3625.1 ID=prot_Ecto-sp13_S_contig1474.3625.1|Name=mRNA_Ecto-sp13_S_contig1474.3625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MAETKRTLTCWCGNVEMELVGLPLASLHCHCGICQKWSGAPFQWLVLYKA
DKTSIVKGKDNITITRTSEDMERGRCKASRWPLRAC*
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mRNA from alignment at Ecto-sp13_S_contig1474:2407..4336+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1474.3625.1 ID=mRNA_Ecto-sp13_S_contig1474.3625.1|Name=mRNA_Ecto-sp13_S_contig1474.3625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1474:2407..4336+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGAGACCAAGCGCACCCTGACATGCTGGTGTGGTAATGTAGAGAT
GGAGCTCGTGGGCCTTCCGCTGGCTAGCCTGCACGTGAGTTGTAGACGTC
TGTATGCAGCTTGCAGCATGTGCTGCTAACTCGTGTGTGTATGTAGTTCC
GGGTGTTGTTCTGGTCAGGCCCGAAGACGGAGTGACATTGACAGCAGTTG
GATGATTATGCTGTGCACCATGTGTTGCTATGTGTTGCTGGCATCCTTCA
CGGCCACGCAGCTATGGCCACCCCGCAAAGGCTACCTGGCTTGCCGTGTG
CTCAGTTGAGCCAAAGCCTATGCACCCAACATGATGCATGCAGTGGAAAG
ATAGTCCAAACAGGAGCAAGCCGAGTGACTGCCTGGCACTGATGTCTACA
TCCCAGCCGGTCACCCAGCTCGGAGACTGGCTGTGGGTGTGGTGGGTATT
GAAGTACTTCGATTATTCTGTGATGCACATACACAATGTGTAGACCTTTC
ATGCCCTGCGATCCCCGGGACAAAACAGGAAATACATGGGAAGAGAGGGG
AAGGAGCGCAGTGTTTTCGTTCTAATATTTCCAGCGGTGACTCGCGCTCC
ATTTTTTCAGTCAACCCGCCGCTCGGTATCGCGCGTTTGCCGTCGACTCA
GCAGAGACATGCAGGAGTACGGCAACACCTGGTAAACCCAAACCTCCTGA
TGCATGACTGCAGTTGTCCCATCACGACTCGCACGGACTGAGCTGCGTAC
AATACATCCGGCGGTGTCACTGAACCCTCACCGATGTGTGCAGACTTCAA
CCACCTCCGCTGAGAATTTTCTCGAAACGGGTGTTCGCTGTGATTGTGAT
GCCACGTACACTTCTGTGTCAAAGACTGTGCGAGTGAGAACATAATTGGC
AGGGATGAGGGTTGTCCCTGTTGGCATGTGGTGGTTTGACCACATCGACT
CGTCTCTGTGCTCCCAATGGGAACGGGAATACAGCGTACAGTAGAGGTCC
CTGTTTAGTGCCGGTTCAATAGTGCCGGTTGCCGGTATAGACTACTGTAG
TCCCGGTGTTTTCGGCTCGCACACACCGGAATACCAAGTCGTTTAGTGCC
GGTGAAACTTCGGCGCACACCCCGGCACTAAACTGGGACCTCCACTGTAG
TAGTACAATGTATAGGCCCGCTCATAAGAAAAACGCCTCTTTTCGCGGTA
AGATTCAATTACTCTATCCAGGGTTATTCGTTGGGCTCGTTCGCCCCCGA
CTCATCATCACTCACGTTGTGTATCAGGCCACACGTGTTGTGCGCCAACT
GCCTCCTCCCCCCTCGCCGCCCGTGTACATGTCTCTCCACAATCGAAGCG
TACTGCTGTACATGTGTATCACGACGACGGGATGTTCCTCAAGACAGTTG
AGACACCCGAACTCCGCTATGCTAGTACCCTCTTCTACTACAGTGTGTGG
CCGGCGTTCTTTGTCTTGCCTGTTTTACGGCGAGAGTGGTGTTCTTCCAG
AAAATGTTCATACCGTGACGGGAGACTTGCAATGTCCGTCCGAGATCATC
CACAGCAGTCTAAAGAGGTATGTTAAAGTTTTCGTTTCATGCGGCAGGTT
GTGTTTAGGACACGGCACAAGTACACAGCAAGACCGCGTTATCGAACCAT
TCCTGATATCCGTATGCCTTACACCTGCCTGCCAAGTTAAACGAAGAAAA
TTACCATCCACTTTTCCCCCTTGTGGTTTGTCGAATCGAACCATGCTTTA
CAGTGCCACTGCGGCATTTGCCAGAAGTGGTCGGGGGCTCCGTTTCAATG
GCTAGTACTATATAAGGCCGACAAGACGTCCATCGTCAAGGGCAAGGACA
ACATCACCATCACCCGGACGAGTGAGGACATGGAGCGCGGGAGGTGCAAG
GCGAGTCGCTGGCCGCTTCGGGCGTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1474:2407..4336+

>mRNA_Ecto-sp13_S_contig1474.3625.1 ID=mRNA_Ecto-sp13_S_contig1474.3625.1|Name=mRNA_Ecto-sp13_S_contig1474.3625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1474:2407..4336+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTGAGACCAAGCGCACCCTGACATGCTGGTGTGGTAATGTAGAGAT
GGAGCTCGTGGGCCTTCCGCTGGCTAGCCTGCACTGCCACTGCGGCATTT
GCCAGAAGTGGTCGGGGGCTCCGTTTCAATGGCTAGTACTATATAAGGCC
GACAAGACGTCCATCGTCAAGGGCAAGGACAACATCACCATCACCCGGAC
GAGTGAGGACATGGAGCGCGGGAGGTGCAAGGCGAGTCGCTGGCCGCTTC
GGGCGTGTTGA
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