mRNA_Ecto-sp13_S_contig14736.3621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: D8LKE1_ECTSI (Similar to retinitis pigmentosa GTPase regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKE1_ECTSI) HSP 1 Score: 385 bits (988), Expect = 2.130e-125 Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1
Query: 1 SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK
Sbjct: 62 SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 239
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: K8Z8W0_NANGC (Hect domain and rld 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z8W0_NANGC) HSP 1 Score: 189 bits (480), Expect = 1.700e-54 Identity = 90/179 (50.28%), Postives = 121/179 (67.60%), Query Frame = 1
Query: 1 SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLG-ERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
+I TS G ++WG +G +P P+ V +PL C++V CGRKH +ALM+GGFV SWG GYFGQLG GDN S PRL+ LDP RLG +RVV VACGG HSAV T VF +GFNRYGQ G G N + P V++S + ++ +++CGRHH++++T G +++WGA SFG+
Sbjct: 138 TIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGI---GSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGR 313
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: W7U0Q3_9STRA (Putative e3 ubiquitin-protein ligase herc4 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0Q3_9STRA) HSP 1 Score: 189 bits (480), Expect = 2.610e-54 Identity = 90/179 (50.28%), Postives = 121/179 (67.60%), Query Frame = 1
Query: 1 SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLG-ERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
+I TS G ++WG +G +P P+ V +PL C++V CGRKH +ALM+GGFV SWG GYFGQLG GDN S PRL+ LDP RLG +RVV VACGG HSAV T VF +GFNRYGQ G G N + P V++S + ++ +++CGRHH++++T G +++WGA SFG+
Sbjct: 92 TIALTSRGVPYQWGTVNGRAYPEPSRVSLGVPLRCLQVSCGRKHALALMEGGFVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGI---GSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGR 267
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A4D9DAH8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAH8_9STRA) HSP 1 Score: 173 bits (438), Expect = 1.420e-48 Identity = 82/159 (51.57%), Postives = 110/159 (69.18%), Query Frame = 1
Query: 61 HPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLG-ERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
+P P+ V +PL C++V CGRKH +ALM+GG+V SWG GYFGQLG GDN S PRL+ LDP RLG +RVV VACGG HSAV T VF +GFNRYGQ G G N + P V++S + ++ +++CGRHH++++T G +++WGA SFG+
Sbjct: 28 YPEPSRVSLGVPLRCLQVSCGRKHALALMEGGYVTSWGVGYFGQLGQGDNLSSDRPRLIHHLDPPRLGGDRVVAVACGGQHSAVHTAGQSVFCFGFNRYGQVGQGQACNKISTPRPVNMSGI---GSSQIRQLVCGRHHTSVLTDKGQVFSWGASSFGR 183
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A835Z434_9STRA (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z434_9STRA) HSP 1 Score: 169 bits (428), Expect = 1.710e-48 Identity = 83/149 (55.70%), Postives = 99/149 (66.44%), Query Frame = 1
Query: 91 IPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGS-KDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
+PL +++ CGR+H+VALM+GGFVM+WG GYFGQLGHGDNAS +PRLL +L+PQ++ V VA GGYHS T AGR F WGFNRYGQCG G D V EP V L + G V CGRHH V GG +Y WGA FG+
Sbjct: 3 VPLAAVQIACGRRHSVALMEGGFVMTWGIGYFGQLGHGDNASCTNPRLLHQLEPQQI----VSVAAGGYHSVAVTRAGRGFAWGFNRYGQCGVGDCADAVVSEPRAVALRELRARGEG-VRAAACGRHHCVAVGTGGGVYAWGAGGFGR 146
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A7S2CLQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLQ1_9STRA) HSP 1 Score: 138 bits (347), Expect = 2.090e-37 Identity = 71/171 (41.52%), Postives = 105/171 (61.40%), Query Frame = 1
Query: 1 SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRL-GERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCG-------NGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVT 489
++ T++G ++ WG + G++ P P + + + V CGRKHT+ L++G V+S+GTGYFGQLGHG+++S R+PR++ LD + L G+RV VA G HS V T GR++ WG NR QCG +G +T+ P DLS V G +++CGRHH AL+T
Sbjct: 74 TVAATTQGTVYHWGSDGGEMRPKPELMELGTKVCAVTVACGRKHTLILVEGARVLSYGTGYFGQLGHGNDSSLRNPRVIESLDSKALNGDRVTAVAAGFAHSGVVTHTGRLYMWGLNRSCQCGVEPPTGSSGLAASTLFAPHPTDLSNVKDH--GRPVQLVCGRHHPALLT 242
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A7S3GVQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVQ9_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.030e-37 Identity = 64/126 (50.79%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 169 WGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNG----SKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
WGTGYFGQLGHGD++S+ PR++ L+P+RLG +V+ VACGG HS V TD+GRVF WG NR GQCG G K ++V EP VD S + V ++ GR+HSA+++ G ++TWG FG+
Sbjct: 1 WGTGYFGQLGHGDDSSWDSPRMISVLEPKRLGAKVINVACGGSHSGVITDSGRVFMWGLNRSGQCGQGLSAKGKSDSVLEPRPVDFSHLANHGTLGVKSLVLGRNHSAMLSTTGRVFTWGEAGFGR 126
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A397VL47_9GLOM (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VL47_9GLOM) HSP 1 Score: 107 bits (268), Expect = 9.930e-25 Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = 1
Query: 4 ILRTSEGKLFRWGVEDGDVHPFP-TGVCTQIPLPCIEVCCGRKHTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCG---NGSKDNTVP-----EPSLVDLSR---VTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
I+ T +GKL+ +E VH T I V CG H +AL + G V SWG+G +GQLGHGD S P+++ LG RV+Q+ACGG+HSA TD+G ++T+G+N G+ G D+T P EP+L++L+ + P + KV CG H+ ++T L+T C +GK
Sbjct: 135 IVVTVDGKLYNLNIEQ--VHSEEITPANDTIDYFFTTVACGENHCLALTQTGQVFSWGSGRYGQLGHGDTKSLDKPKVIEFF----LGLRVIQIACGGWHSATITDSGDLYTFGWNHLGRLGIPPPDESDHTQPSINYAEPTLIELNDGKDMGPNVI----KVSCGSAHTVIITDNYQLWT---CGWGK 310
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A7S2PM89_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PM89_9STRA) HSP 1 Score: 105 bits (262), Expect = 3.950e-24 Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 1
Query: 13 TSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRK---------HTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
T++G L+ WG ++ V Q +E G+K HT L G +WG G FG+LGHG + PRL+ L LG+R Q+ACGG+HSAV T+ G+++T+G +GQ G+G K N V +P+LV + G V + ++ CG HS +T G ++TWG GK
Sbjct: 103 TNKGCLYTWGDKENGVAGHGDTDGHQYTPKLLERLSGKKVVQLSACGFHTGCLTDQGECFTWGEGKFGRLGHGAERNCHSPRLIETL----LGKRPKQIACGGFHSAVVTEDGKMYTFGGGEHGQLGHGDKVNKV-KPTLV---QALDGIV--LQQITCGWSHSVALTTNGEVFTWGNGDHGK 275
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Match: A0A7S2A6T9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6T9_TRICV) HSP 1 Score: 107 bits (267), Expect = 4.070e-24 Identity = 66/183 (36.07%), Postives = 91/183 (49.73%), Query Frame = 1
Query: 13 TSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRK---------HTVALMKGGFVMSWGTGYFGQLGHGDNASYRHPRLLRRLDPQRLGERVVQVACGGYHSAVATDAGRVFTWGFNRYGQCGNGSKDNTVPEPSLVDLSRVTPGAVGEVPKVLCGRHHSALVTRGGALYTWGACSFGK 534
TS G L+ WG ++ V Q +E G++ HT L G V +WG G FG+LGHG + PRL+ L LG+R QVACGG+H+AV T+ GR++T+G +GQ G+G K N V + L + V ++ CG HS +T G +YTWG GK
Sbjct: 51 TSTGALYTWGDKENGVAGHGDTEGHQYTPKLLERLAGKRIVQLSACGFHTGCLTDAGEVYTWGEGKFGRLGHGAERNCHSPRLVEAL----LGKRPRQVACGGFHTAVITEDGRMYTFGGGEHGQLGHGDKVNKVKPTFVQALEGIF------VSQITCGWSHSVALTSKGRVYTWGNGDHGK 223 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14736.3621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14736.3621.1 >prot_Ecto-sp13_S_contig14736.3621.1 ID=prot_Ecto-sp13_S_contig14736.3621.1|Name=mRNA_Ecto-sp13_S_contig14736.3621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp SILRTSEGKLFRWGVEDGDVHPFPTGVCTQIPLPCIEVCCGRKHTVALMKback to top mRNA from alignment at Ecto-sp13_S_contig14736:3184..4170- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14736.3621.1 ID=mRNA_Ecto-sp13_S_contig14736.3621.1|Name=mRNA_Ecto-sp13_S_contig14736.3621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14736:3184..4170- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14736:3184..4170- >mRNA_Ecto-sp13_S_contig14736.3621.1 ID=mRNA_Ecto-sp13_S_contig14736.3621.1|Name=mRNA_Ecto-sp13_S_contig14736.3621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14736:3184..4170- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |