mRNA_Ecto-sp13_S_contig14716.3608.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14716.3608.1 vs. uniprot
Match: D7G392_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G392_ECTSI) HSP 1 Score: 1246 bits (3225), Expect = 0.000e+0 Identity = 720/881 (81.73%), Postives = 763/881 (86.61%), Query Frame = 1
Query: 1 MSSIVGAALPWVGEKVSDLLARQREASNNMVAGGSGRAGIVDADLTTATXXXXXXXXXXXXXXXXXXXXXSRRATQLKNGSNSRNRSGSNSGCISPVRRVRRRANASPIAGTSRHEANSNVAAGAAGRTNNDWAPQDKTPKRASVWEPENFQGGGGSSNTTGVPKKRRSTDALAGSNANGLPSPPPGNGNGTVPGTGVHWSGKSSDPTRSKAGDAAVAGGTRSLTSEDIISGKSGAGVGVSAEMRVGDGRARGPPSSTHDARVVPPAATSSRGGMIPSALGEGNAGIRERRKPSREEEAQRDVGNLTPYEVSVDVGEAESCPSSLTQQRAEEAGRRAQTERFLAPLPPVRAGGDGGRKADLTISNWPPRTDSVSGTGDARVVGGSGDNIVGSGYRNGNSSIACWKTSSASDSNSLASSAPVFSNGVLARRPCSSTGG---------EKNGGSENGGDGIAGAARSLRAVLRGRDAASREVGSSSCSSTNTHAKEDAERGVGGGRGAVSAAPEVAPRDGGRLAWCGDRGLLARPPATLQPRQHPFVRSSSLSYPASAKGLASAAGGGAHVAGSSSACDALTGRCSQRQSTAAAAACLGRLDFTAVNVEAAGAAYPSGGGRGSADRQGDVAWGGGVANXXXXXXXXXGRGAGGIPSGDQEARDGPESVTRESREVLVMESLEVGADDVATMSSSALSVTSREDEESDAEDVYMMVNDRYDPDYHPFAESLLDANSGDESSINMSMAIEHTNHHNEDVAEAKTTRMRTRAAAGEAYPTRKKTSSHATVLGDDSEECPRESSLASNGSDSGSLPDGDSGGHLSAGEEAPTTRGGGRKKKLKLNAARRRAKASAKAEQCNDMDSKPEPRVAKPRTRTVVEPLVPPQ 2616
MSSIVGAALPWVGEKVSDLL RQREASNNMVAG SG+AG+VDAD+TTAT XXXXXXXXXXXXX SRRATQLKNGSN+ NRSGSNSGCI PVRRVR+RAN SP+AGTSRHEAN +VAAGAAGRTNND APQDKTPK SVWEPENFQGGG +SNTTGVPKKRRSTDALAGSN NGLPSPPPGNGNG V G G+HWSGKSS+ T SK GDAAVAGGTRSLTSEDI+SG+SG GV VSAE RVG+GRARGPPSST DARVV PAA S+RGG PSALGEGNAGIR++RK SREEE QRD+G+LTPY+ +D EAESCPSSLTQQRAEEAGRRAQTERFLAPLPPV AGG KADLTISNWPPRTDSVS TGDARVV GSG N VG+G+RNGNSS ACWKTSSAS SNSLASSAPV SNGVLA RP SSTG EK+ +GAARSLRAVLRG+DAASR+V SSSCSSTNTHAKEDAERGVG G GAVSAAPEVAPRDGGRLAWCGDRGLLARPPATLQPRQHPFVRSSSLSYP SAKGLASAAG GAHVAGSSSACDAL+GRCSQRQSTAAAAACLGRLDFTAVNV+AAGAAYP+GGG G ADR+GD+AWGGGVAN GRGA GI SGD+EA DGPES TRES EV VM +EVGADDVATMSSSALSVTSREDEESD EDVYMMV+DRYDPDYHPFAESLLDANSGDESS++MS++I H NHHNED +AK TRMR + AAGEAYPTR+KTSS ATVLGDDSEEC ESS+A NGSD G+L GDSGGHLS GEEAP TRGGGRKK LK AARRR KASAKAEQCNDMDSKPEPRVAKPRTRTVVEPLVPPQ
Sbjct: 1 MSSIVGAALPWVGEKVSDLLGRQREASNNMVAGSSGKAGVVDADITTATAMRMGAXXXXXXXXXXXXXSISRRATQLKNGSNNSNRSGSNSGCILPVRRVRKRANTSPVAGTSRHEANIDVAAGAAGRTNNDCAPQDKTPKGTSVWEPENFQGGGVNSNTTGVPKKRRSTDALAGSNVNGLPSPPPGNGNGAVSGKGLHWSGKSSNLTHSKDGDAAVAGGTRSLTSEDIVSGRSGVGVRVSAETRVGEGRARGPPSSTLDARVVLPAARSTRGGTTPSALGEGNAGIRKKRKSSREEEGQRDLGHLTPYDAGMDASEAESCPSSLTQQRAEEAGRRAQTERFLAPLPPVGAGGXXXGKADLTISNWPPRTDSVSATGDARVVSGSGGNGVGNGHRNGNSSKACWKTSSASYSNSLASSAPVLSNGVLASRPFSSTGSKGRSFDDGEEKSDSXXXXXXXTSGAARSLRAVLRGQDAASRDVQSSSCSSTNTHAKEDAERGVGVGGGAVSAAPEVAPRDGGRLAWCGDRGLLARPPATLQPRQHPFVRSSSLSYPVSAKGLASAAGRGAHVAGSSSACDALSGRCSQRQSTAAAAACLGRLDFTAVNVDAAGAAYPTGGGGGGADRRGDLAWGGGVANGGSTAGEGHGRGAXGITSGDREAGDGPESRTRESGEVRVMGVVEVGADDVATMSSSALSVTSREDEESDTEDVYMMVDDRYDPDYHPFAESLLDANSGDESSVDMSVSIGHDNHHNEDAGKAKKTRMRAQVAAGEAYPTREKTSSQATVLGDDSEECAGESSIAPNGSDCGTLAGGDSGGHLSVGEEAPMTRGGGRKKTLKSKAARRRDKASAKAEQCNDMDSKPEPRVAKPRTRTVVEPLVPPQ 881
BLAST of mRNA_Ecto-sp13_S_contig14716.3608.1 vs. uniprot
Match: A0A6H5LE14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE14_9PHAE) HSP 1 Score: 1237 bits (3201), Expect = 0.000e+0 Identity = 708/880 (80.45%), Postives = 746/880 (84.77%), Query Frame = 1
Query: 1 MSSIVGAALPWVGEKVSDLLARQREASNNMVAGGSGRAGIVDADLTTATXXXXXXXXXXXXXXXXXXXXXSRRATQLKNGSNSRNRSGSNSGCISPVRRVRRRANASPIAGTSRHEANSNVAAGAAGRTNNDWAPQDKTPKRASVWEPENFQGGGGSSNTTGVPKKRRSTDALAGSNANGLPSPPPGNGNGTVPGTGVHWSGKSSDPTRSKAGDAAVAGGTRSLTSEDIISGKSGAGVGVSAEMRVGDGRARGPPSSTHDARVVPPAATSSRGGMIPSALGEGNAGIRERRKPSREEEAQRDVGNLTPYEVSVDVGEAESCPSSLTQQRAEEAGRRAQTERFLAPLPPVRAGGDGGRKADLTISNWPPRTDSVSGTGDARVVGGSGDNIVGSGYRNGNSSIACWKTSSASDSNSLASSAPVFSNGVLARRPCSSTG--------GEKNGGSENGGDGIAGAARSLRAVLRGRDAASREVGSSSCSSTNTHAKEDAERGVGGGRGAVSAAPEVAPRDGGRLAWCGDRGLLARPPATLQPRQHPFVRSSSLSYPASAKGLASAAGGGAHVAGSSSACDALTGRCSQRQSTAAAAACLGRLDFTAVNVEAAGAAYPSGGGRGSADRQGDVAWGGGVANXXXXXXXXXGRGAGGIPSGDQEARDGPESVTRESREVLVMESLEVGADDVATMSSSALSVTSREDEESDAEDVYMMVNDRYDPDYHPFAESLLDANSGDESSINMSMAIEHTNHHNEDVAEAKTTRMRTRAAAGEAYPTRKKTSSHATVLGDDSEECPRESSLASNGSDSGSLPDGDSGGHLSAGEEAPTTRGGGRKKKLKLNAARRRAKASAKAEQCNDMDSKPEPRVAKPRTRTVVEPLVPPQ 2616
MSSIVGAALPWVGEKVSDLL RQREASNNMVAGGSGRAG+VDAD+TTAT SRRATQLKNGSNSRNRSGS+SGCI PVRRVR+RAN SPIAGTSRHEANSN AAGAAGRTNND APQDKTPK SVWEPENFQGGGGSSNTTGV KKRRSTDALAGSNANGLPSPPPGNGN V G G+HWSGKSS T SK GDA VAGGTRSLTSEDI+SG SGAGV SA RVG+GRARGP SSTHDARVV PA S+RGG IPSA+ EGNAGIR RK SR EE QRDVGNLTPY+ +DV EAESCPSSLTQQRAEEAGRRAQTERFLAPLPPV AGG GG KADLTISNWPPRTDSV+GTGDA VV GSG N VG+GY NG S+ ACWKTSSAS SNSL SSAPVFSNGVLA RP SSTG G+K+ SENGG G AGA RSLRAVLRGR+ ASREVGSSS SSTNTHA EDAERGVG G GAVSAAPEVAP++GGRLAWCGDRGLLARPPATLQPRQHPFVRSSSLSY AS KGLASAAG GAH AGSSSACDAL+GRCSQRQSTAAAAACLGRLDFTAVNV+AAGAAYPSG G G +DR+GDVAW G AN GRGAGGI SGD+EARDGPESVT+ES EV VMES+EVGADDVATMSSSALSVTSREDEESD EDVYMMV+DRYDPDYHPFAESLLDANSGDESSI+MS+AIEH NHHNED AEA+ TRMR R AA AY TR+KTSS+ATVLGDDSEEC ESSLA NGSD GS+ DGDSGGHLS GEEAP TRGGGRK+ LK +ARR AKASA AEQCND D+KP+ RVAKPRTRTV+EPLVPPQ
Sbjct: 1 MSSIVGAALPWVGEKVSDLLGRQREASNNMVAGGSGRAGVVDADITTATAMRMGAPSSARVRTARAAASSSRRATQLKNGSNSRNRSGSSSGCILPVRRVRKRANTSPIAGTSRHEANSNGAAGAAGRTNNDCAPQDKTPKGTSVWEPENFQGGGGSSNTTGVLKKRRSTDALAGSNANGLPSPPPGNGNRAVSGMGLHWSGKSSISTHSKGGDADVAGGTRSLTSEDIVSGSSGAGVRASAATRVGEGRARGPSSSTHDARVVLPATRSTRGGTIPSAIAEGNAGIRNNRKSSRAEEGQRDVGNLTPYDAQMDVIEAESCPSSLTQQRAEEAGRRAQTERFLAPLPPVGAGGVGGGKADLTISNWPPRTDSVNGTGDAHVVSGSGGNGVGNGYTNGKSNRACWKTSSASYSNSLDSSAPVFSNGVLAPRPFSSTGKGRSFDGSGKKSDRSENGGGGAAGAPRSLRAVLRGRNVASREVGSSSGSSTNTHAXEDAERGVGVGGGAVSAAPEVAPKNGGRLAWCGDRGLLARPPATLQPRQHPFVRSSSLSYAASTKGLASAAGRGAHAAGSSSACDALSGRCSQRQSTAAAAACLGRLDFTAVNVDAAGAAYPSGCGGGGSDRRGDVAWSGRFANGGSTAGEGHGRGAGGITSGDREARDGPESVTQESGEVRVMESVEVGADDVATMSSSALSVTSREDEESDTEDVYMMVDDRYDPDYHPFAESLLDANSGDESSIHMSVAIEHDNHHNEDAAEARKTRMRARVAAEGAYRTREKTSSYATVLGDDSEECAGESSLAPNGSDCGSIADGDSGGHLSVGEEAPATRGGGRKETLKSKSARRWAKASAMAEQCNDTDNKPDLRVAKPRTRTVMEPLVPPQ 880 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14716.3608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14716.3608.1 >prot_Ecto-sp13_S_contig14716.3608.1 ID=prot_Ecto-sp13_S_contig14716.3608.1|Name=mRNA_Ecto-sp13_S_contig14716.3608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=872bp MSSIVGAALPWVGEKVSDLLARQREASNNMVAGGSGRAGIVDADLTTATAback to top mRNA from alignment at Ecto-sp13_S_contig14716:1..3029- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14716.3608.1 ID=mRNA_Ecto-sp13_S_contig14716.3608.1|Name=mRNA_Ecto-sp13_S_contig14716.3608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14716:1..3029- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14716:1..3029- >mRNA_Ecto-sp13_S_contig14716.3608.1 ID=mRNA_Ecto-sp13_S_contig14716.3608.1|Name=mRNA_Ecto-sp13_S_contig14716.3608.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14716:1..3029- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |