mRNA_Ecto-sp13_S_contig1471.3600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1471.3600.1
Unique NamemRNA_Ecto-sp13_S_contig1471.3600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1471.3600.1 vs. uniprot
Match: A0A6H5K154_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K154_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 2.910e-85
Identity = 144/162 (88.89%), Postives = 149/162 (91.98%), Query Frame = 3 
Query:  246 MAPPAGRGGGGARGHGPPGGFRRGDPLPPXXRPPAPAGQFFGGPGVRAGYGGGHGGARGPLGTTCCCWVVLCSVAFVIVVSVGIMLIESLDECTTSTSDSENSNCIAYEVALALGAGXXXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN 731
            MAPPAGRGGGGARGH  PGGFR G P PPXX   APAGQFFGGPGVRA YGGGHGG RGPLGTTCCCWVVLC+ AFVIVV+VGIMLIESL+EC+TSTSDSENSNCIAYEV LA+GAG XXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN
Sbjct:    1 MAPPAGRGGGGARGHRAPGGFRGGAPRPPXXXXXAPAGQFFGGPGVRARYGGGHGGTRGPLGTTCCCWVVLCTAAFVIVVTVGIMLIESLEECSTSTSDSENSNCIAYEVGLAVGAGVXXXXXXXXXMRPSEEGYQPIDGSASERQYMLATEAPLPQYVHGN 162
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1471.3600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K154_9PHAE2.910e-8588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1471contigEcto-sp13_S_contig1471:797..5149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size921
Hectar predicted targeting categorysignal anchor
Exons5
Cds size489
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1471.3600.1prot_Ecto-sp13_S_contig1471.3600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1471 1867..3743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.983593-UTR-Ecto-sp13_S_contig1471:796..9591681462784.983593-UTR-Ecto-sp13_S_contig1471:796..959Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1471 797..959 -
1681462784.9940665-UTR-Ecto-sp13_S_contig1471:1842..18661681462784.9940665-UTR-Ecto-sp13_S_contig1471:1842..1866Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1471 1843..1866 -
1681462785.0309966-UTR-Ecto-sp13_S_contig1471:3743..38751681462785.0309966-UTR-Ecto-sp13_S_contig1471:3743..3875Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1471 3744..3875 -
1681462785.039076-UTR-Ecto-sp13_S_contig1471:5036..51491681462785.039076-UTR-Ecto-sp13_S_contig1471:5036..5149Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1471 5037..5149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462785.0034056-CDS-Ecto-sp13_S_contig1471:1866..19631681462785.0034056-CDS-Ecto-sp13_S_contig1471:1866..1963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 1867..1963 -
1681462785.014389-CDS-Ecto-sp13_S_contig1471:2928..30141681462785.014389-CDS-Ecto-sp13_S_contig1471:2928..3014Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 2929..3014 -
1681462785.0230002-CDS-Ecto-sp13_S_contig1471:3437..37431681462785.0230002-CDS-Ecto-sp13_S_contig1471:3437..3743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1471 3438..3743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1471.3600.1

>prot_Ecto-sp13_S_contig1471.3600.1 ID=prot_Ecto-sp13_S_contig1471.3600.1|Name=mRNA_Ecto-sp13_S_contig1471.3600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MAPPAGRGGGGARGHGPPGGFRRGDPLPPPPRPPAPAGQFFGGPGVRAGY
GGGHGGARGPLGTTCCCWVVLCSVAFVIVVSVGIMLIESLDECTTSTSDS
ENSNCIAYEVALALGAGVVVLCCCCCCMRPSEEGYQPIDGSASERQYMLA
TEAPLPQYVHGN*
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mRNA from alignment at Ecto-sp13_S_contig1471:797..5149-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1471.3600.1 ID=mRNA_Ecto-sp13_S_contig1471.3600.1|Name=mRNA_Ecto-sp13_S_contig1471.3600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1471:797..5149- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATTCTTGTCGTTCAAACAGCGAAGAGAAAGAAGTGTCGGAGGAGCGT
TTCCGCACTGGGAGGGGGGCAACATTGCTTCATACAGCAGTACGAGGACA
AGTACAACCAGAAGTGAGTCAAATGCACTACTTGTACTTCATCTCGAAAG
CTGGTACATTTTTTGCCACTTGTGCTTGTGGATAGGGCGGGGTTGTTTGT
GTGTTCGTTCGAATGTTAGATTGGAAGAGTCAGCAAAAAATTGGTGAACT
ACAGTAGCAGTGCTGTAGACCACTGGTCATGGACAAAGTCCAGCTGAGAC
GAGAACGCCGTGAGAAATATGGCATGAGACATTGCACCACTTGGACCGGT
ATTCAAAGCTTGGTTTATGTGCAGCAACGACAAAGACGGTGCCGAAACTG
GCGGCGTTTGGAGCCGCCTGTTCGACAGCTCTCCGAGCACGTACAGTATC
GTGTGATTGTGGCATCCTCTGCGTCGTCGTGTAGTCGGCCTTTGAAAATT
GGTACAGGATTTTTGGTACAGAGCATCATCATGTATAAAACCCATGACAT
CTCCCATGTACAGCAAAACTGTTGTACACCCTCACGAAGGTTGTCTCGAG
CTTGCTCCAAATAAATAGGGGATTTGGGTTGCAAATGGTGTGCGGTGATT
ACAGCAGTTGCGGCGGCGACGTGCGTGCGTGTTGTCGCGTTTGGCTAGAC
CGGGTGAGACATGGAACCCCCTAGCCGGTGCGAGAGATGGCAGTAGGCGA
TACTCAGAGTTTTGACTACAGTGCACCGCAAGAGGGTTGGCAGAGCAGCA
ACCGTTGCGTCGTTTTCGTGGTTGCTTTAGTCGAGTACTCGCGTGCTCGT
GTCGTTGGGAGTCTGATTGTCGGATTCGCTCTACATCTAACTTTCTCTCT
CTCCGAGCCGTTTCTCCTTCCCTCTCTTGATGTGCCTGACCCAACCTGAC
GAGCTCGAAGGAACCTCAATCTAGCAGACCGCTCTCAGTATCGCACTCTC
GCCCGGCCAAGGATGGGTATTGCTTCAGTCCTTGAGTTTCCAAGGTTTCG
CTGGAAAATTGGTCCATCCTGCATTTTCGTGCCGAAAAACGATGAACGCA
TCTGTGGTGCGTGTGTGTTCCGTTTGATTCTGGCTGACTTCACCAAAGAG
TGACCTATTGGCTATCGCTCCCTGTCGCTGACTTGCCCAGGGTCTGCCTC
AGGCTTGCTTCGCGTGCTCTCTTCCCTTCTTTTTTCGTTTTTGGTTCGTC
TGCTCACGACCTGCGTCGTATCAGGAAAGGCGATAAACTCAACACACCAA
CGTACCGTCGGCATCCCCCTGTAGACTGTGCACACAGTCAGCGTCGGCAG
CTTCTAGGTGGCATCGAGATCTCGCATAGCTTCGCTTTCTCCATCGCTTC
GATACAATGGCGCCCCCCGCAGGGAGGGGGGGAGGGGGGGCGAGGGGCCA
CGGGCCCCCCGGAGGATTCAGACGCGGCGACCCTCTACCACCCCCACCGC
GACCTCCAGCCCCAGCCGGGCAGTTCTTTGGGGGCCCCGGGGTACGGGCG
GGGTATGGTGGGGGCCACGGGGGTGCTCGAGGGCCGTTGGGGACGACGTG
CTGCTGCTGGGTGGTTCTCTGTTCGGTAGCCTTTGTGATCGTGGTGTCCG
TGGGCATCATGCTCATCGAGTCTCTGGATGAATGTACTACGTCGACCTCG
GATTCCGAGAATGTGGGTGTTGACTTGAGCGATGGTGTGATTCCATCATG
CAACCGTGGTTCGAGACCTAGCGTTGTTCGTGTTTGCTATGCAATATTAG
GTTGTGTACCTCGCGCGCGGGGAAGTGGTGGAGATTGATCTGTTCTGTTT
TCCCCGTCGAAATTTGGCAAGGGTCGAACATTTCCAACCTTTTGGGGTAG
TTTTGGTCGAGTGGGCGACAAGCTGTGTACGGCCGTTGCCCCAAACATGA
ACACTTTCAAACCATACCGACACACGTGGAGATGGTGACGTACGTTGTTT
TTCACCCTCTCGTTCACTTGCACTGTTCGCGCTTTAGCCGTGTGCAACGT
TAACGCCCTGCTGCTGCCGCTGTTGTTGTTGTTGCTGTCGCTGTTGGCGT
GACGGCTGGGCGGAACGATGGGATGGCGGCCTCAGTCCAACTGCATCGCG
TACGAGGTGGCACTTGCCCTGGGGGCCGGTGTTGTCGTCCTGTGTTGCTG
CTGCTGCTGCATGCGGCCAAGGTGATCGATCACGTTGGGGATCGGCTCCG
CTGTCATTTGATTCCTATGAGAGATGGTTGCGCTCATGGAGCGCTCTCCT
CGCCCTTTTGCTTACCTGGGTGTAGTGACGTTGGTTTCTAGCCGGACCGA
AATGATCAAGAGGAAACGTCGGTATATGCGACACGCATTACATGCACCAG
GTAATGGGCAACTATCAACGGGGCGGGAGCCGAAAATGAACCACAGAGAT
CGACGTGCCCAAAAATAGCGAAATGCGTTTTGAGCTGGAGGGAAGCGCGA
CATTCGATGAACGGGATATCTTGGTGCAAGGCGTTGCACCAGACTACCCG
CTCAAATGTTTGGCTTCCCTGCGATTTCTTCAGTTGGGTTGTACTTTCAA
AAACGCTGTTTCTGTTGCTGTGCGTGTCTCCAGCTTTTATTTTCAATTCA
ATGTGCAGTCGTGTACGCTGCTGGATTGTCCCTTCTCCTTAGTCGACATG
TCATCCTTGTTTTATAGAATATTCCAACCCAAAAATTATACGCTGTGTTG
ATCCAGCCGTGACTCAGATGTCGTCCTAGCATTTCGCCGCCGGTTAGTGA
GGTTGAACCAGCACCTGCGCGTGTTCCACAGTCCTCTGAAATTTCCTCGA
TGTACGATACCAAGTGCAATGACTTCGCCGTCGTGTGTTTTGGCTTGTGT
GCTGGCAACAACGAAACGCTCAAGGGCAAAACCCCGCCTGACCAGTCTTT
GTCTTCAGCACTAACAGTCGTACTAGCTGTTATGCTGTGACGTTGGCATC
TGTTTGGTGTGTTATGTGACCGGTTAGTGTATCTCGGCATCGCTTTCGCA
GTCTACATACCGAATTGTTGACGTGGACCTTTGTGACACGTACATCATTA
CTGCTTGGACGTATCGGCTAATGTCATTTTACGCTTTTACGAATGGTGCT
GCCTTGACGTGTGCTGGGTCGATCACATCCCCGTAGTGAGGAAGGATACC
AGCCGATCGACGGCTCTGCGTCGGAGAGACAGTACATGCTCGCGACGGAG
GCACCGCTTCCCCAGTATGTGCACGGCAACTGAAGCCCCGCTCTCGATCC
CTTGAAGGTGAACACCATCGTCGCTGTTGTCCTCATGCCACCCGTCCGTG
TAGATGTGGCGTAGGCACACACTTGTACCACGTTGCCATTTTTGTTGTTG
TCGCGAAACTGTTGATGGTTCTGTCGATGCGGAAGGACTCTTGGCAATGG
AAAGCCTTGTGTCACCTTCGGGTACGCACTGTCGGGCAGTCCTTCTGCGT
CGACGTGGGGAAGCGATTTTATTGAAACGGGCGTCCATTGGTCGGTTCCG
TGCCGTCGACTTGGCCCGATTACTGTCCAAAGCAACGTCAGCGTGCTCGG
ACTTGTTCTGAGCACCGAGCCGGGGCGAATGGCTGATTAGGGGAAACCTT
TGAGCTGGGTCTGGTGTTTGTGGTGGGTGGCGACACCCAGCGAGAGGCAC
ATTCTCTATATCTCCAAACTTGTGATCAAGGCCACCCTCACTATTACGAG
AACCGAGCAACACACAGATTCGCCACCGTGTTCTCCGTAGCGCTAACAGT
GCCCGACTGATGACGTTGTTTCAACCTGTTGTGCTTCAGAAGCTTTCAAG
CCCTATCTGCAGGTATTTGTCAAGCAAGTCCGCCGTATGTGTCGACTGGT
TCAATTTTTATTCGGGCGTGTCTTCTCGATAGCAGAAGTCTGTCCTCCTC
ATCCTGCGTCTTTGCCTGTCTCGATACTGTCGTGTTCCATCGGCGTGTTT
CGTTATCTTCGCACTGTGTGCCGTTGTGGGACGTGGGTGGCATGATTGGC
ACGGGCGATGCAACAGCGGTGTGAACCCCTCCAAACAAGAACAAACACTT
GGCGTTGCCCCTTCTTTGCGGTGCTCTCACCTACATATCTGTGACGTTTT
CCTCTTCTGTGCTGCATCGCATTTGTTGTTTGCTCTGCAGTCGACACCAT
GGACTACGGAGTAACGAAGTCCATACGCAGGTGTTGAATGAACAGCTGAT
CAAGTTCATCGACGAAGGGTAGTAGTGTATCCACGGGGCTACTGCTCTGC
TGTGTGCTAGGAATGAGGGCCTCGGGACGAAAGGCCAAAGTCCCTGCACC
CTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1471:797..5149-

>mRNA_Ecto-sp13_S_contig1471.3600.1 ID=mRNA_Ecto-sp13_S_contig1471.3600.1|Name=mRNA_Ecto-sp13_S_contig1471.3600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1471:797..5149- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCCCCCGCAGGGAGGGGGGGAGGGGGGGCGAGGGGCCACGGGCC
CCCCGGAGGATTCAGACGCGGCGACCCTCTACCACCCCCACCGCGACCTC
CAGCCCCAGCCGGGCAGTTCTTTGGGGGCCCCGGGGTACGGGCGGGGTAT
GGTGGGGGCCACGGGGGTGCTCGAGGGCCGTTGGGGACGACGTGCTGCTG
CTGGGTGGTTCTCTGTTCGGTAGCCTTTGTGATCGTGGTGTCCGTGGGCA
TCATGCTCATCGAGTCTCTGGATGAATGTACTACGTCGACCTCGGATTCC
GAGAATTCCAACTGCATCGCGTACGAGGTGGCACTTGCCCTGGGGGCCGG
TGTTGTCGTCCTGTGTTGCTGCTGCTGCTGCATGCGGCCAAGTGAGGAAG
GATACCAGCCGATCGACGGCTCTGCGTCGGAGAGACAGTACATGCTCGCG
ACGGAGGCACCGCTTCCCCAGTATGTGCACGGCAACTGA
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