mRNA_Ecto-sp13_S_contig14704.3597.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14704.3597.1
Unique NamemRNA_Ecto-sp13_S_contig14704.3597.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14704.3597.1 vs. uniprot
Match: A0A6H5KST7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST7_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 8.610e-87
Identity = 190/214 (88.79%), Postives = 199/214 (92.99%), Query Frame = 1 
Query:    4 AVPFEDRVEELEKELSESRRVLKRSDSAASISTVLSAVSSSTSXXXXXXXXXXXXXXXXXXXXXXXXXXXKLVETMTLLKDAAKAIPMARGELVGKSERCKQHVGEDAVSFCEANNTNTTGALDHQPGCNAPATGVECDKARLLVGGREEGAGEGSAMQAMATTADKSGGEXXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGAAA 645
            AVPFEDRVEELEKELSESRRVLKRS+SAASIST+LSAVSSS  XXXXXXXXXXXXXXXXXXXXXXXXXXXKLVETMTLLKDA KA+ MARGELVGK+ERCKQ VG+DAVSFCEANNTNTT ALDHQPGCNAPATGVEC KAR LVGGR EGA EGSA++AMATTADKSGGE     QDMSAKVAKMQ+ELDGLHAVLDNLSA+RAAAALGGAAA
Sbjct:  320 AVPFEDRVEELEKELSESRRVLKRSNSAASISTILSAVSSSX-XXXXXXXXXXXXXXXXXXXXXXXXXXXKLVETMTLLKDAEKAMRMARGELVGKNERCKQQVGKDAVSFCEANNTNTTVALDHQPGCNAPATGVECGKARPLVGGRGEGAEEGSAIEAMATTADKSGGEGEGQGQDMSAKVAKMQSELDGLHAVLDNLSAKRAAAALGGAAA 532
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BLAST of mRNA_Ecto-sp13_S_contig14704.3597.1 vs. uniprot
Match: D7FMI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI6_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 8.230e-84
Identity = 188/210 (89.52%), Postives = 190/210 (90.48%), Query Frame = 1 
Query:   19 DRVEELEKELSESRRVLKRSDSAASISTVLSAVSSSTSXXXXXXXXXXXXXXXXXXXXXXXXXXX-KLVETMTLLKDAAKAIPMARGELVGKSERCKQHVGEDAVSFCEANNTNTTGALDHQPGCNAPATGVECDKARLLVGGREEGAGEGSAMQAMATTADKSGGEXXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGAAA 645
            DRVEELEKELSESRRVLKRSDSAASIST LSAVSS   XXXXXXXXXXXXXXXXXXXXXXXX    KLVETMTLLKDA KAI MARGELVGKSERCKQ VGEDAVSFCEAN TN TG LDHQPGC+APATGVEC KAR LV G EEGAGEGSAM+AMATTADKSGGE XXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGA A
Sbjct:  237 DRVEELEKELSESRRVLKRSDSAASISTALSAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXKHKDKLVETMTLLKDAEKAIRMARGELVGKSERCKQQVGEDAVSFCEANITNATGGLDHQPGCSAPATGVECGKARPLVSGLEEGAGEGSAMEAMATTADKSGGEGXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGGAVA 446
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BLAST of mRNA_Ecto-sp13_S_contig14704.3597.1 vs. uniprot
Match: D8LMT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT9_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.050e-12
Identity = 63/143 (44.06%), Postives = 81/143 (56.64%), Query Frame = 1 
Query:  214 KLVETMTLLKDAAKAIPMARGELVGKSERCKQHVGEDAVSFCEA--NNTNTTGALDHQPGCNAPATGVECDKARLLVGGREEGAGEGSAMQAMATTADKSGGEXXXXXQDMSAKVAKMQAELDGLHAVLDNLSAERAAAALGG 636
            +L+E M+LLK+A  A   A+ EL GK E+ ++   +   S   +  N T  TG L H  G  A     E   AR LVG   +G  EG A    A  A+ +GGE      D+SAKVA +QAELD +HA+LDN+SAER AA LGG
Sbjct:  472 QLLEMMSLLKEAEAAKQAAQDELAGKDEKIEELEAKVLASSTSSPPNGTANTGGLHHDSGYTA-----EGGAARSLVG---DGEAEGGAA---AAEAEANGGE------DLSAKVATLQAELDDMHAMLDNVSAERDAA-LGG 596
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14704.3597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST7_9PHAE8.610e-8788.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMI6_ECTSI8.230e-8489.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMT9_ECTSI2.050e-1244.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14704contigEcto-sp13_S_contig14704:335..3799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size720
Hectar predicted targeting categoryother localisation
Exons6
Cds size720
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14704.3597.1prot_Ecto-sp13_S_contig14704.3597.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14704 335..3799 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.7639618-CDS-Ecto-sp13_S_contig14704:334..3971681462784.7639618-CDS-Ecto-sp13_S_contig14704:334..397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14704 335..397 +
1681462784.7857015-CDS-Ecto-sp13_S_contig14704:916..10421681462784.7857015-CDS-Ecto-sp13_S_contig14704:916..1042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14704 917..1042 +
1681462784.7962377-CDS-Ecto-sp13_S_contig14704:1699..17771681462784.7962377-CDS-Ecto-sp13_S_contig14704:1699..1777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14704 1700..1777 +
1681462784.8057003-CDS-Ecto-sp13_S_contig14704:2062..21161681462784.8057003-CDS-Ecto-sp13_S_contig14704:2062..2116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14704 2063..2116 +
1681462784.8203285-CDS-Ecto-sp13_S_contig14704:2678..29271681462784.8203285-CDS-Ecto-sp13_S_contig14704:2678..2927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14704 2679..2927 +
1681462784.8319094-CDS-Ecto-sp13_S_contig14704:3649..37991681462784.8319094-CDS-Ecto-sp13_S_contig14704:3649..3799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14704 3650..3799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14704.3597.1

>prot_Ecto-sp13_S_contig14704.3597.1 ID=prot_Ecto-sp13_S_contig14704.3597.1|Name=mRNA_Ecto-sp13_S_contig14704.3597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
QAVPFEDRVEELEKELSESRRVLKRSDSAASISTVLSAVSSSTSNDGGEG
EGESESESENKSDDVKDKDKDKLVETMTLLKDAAKAIPMARGELVGKSER
CKQHVGEDAVSFCEANNTNTTGALDHQPGCNAPATGVECDKARLLVGGRE
EGAGEGSAMQAMATTADKSGGEGEGQGQDMSAKVAKMQAELDGLHAVLDN
LSAERAAAALGGAAAGREREANGMDLSGKIEAMQAEVQQ*
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mRNA from alignment at Ecto-sp13_S_contig14704:335..3799+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14704.3597.1 ID=mRNA_Ecto-sp13_S_contig14704.3597.1|Name=mRNA_Ecto-sp13_S_contig14704.3597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14704:335..3799+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGTGCCGTTTGAGGATCGCGTCGAGGAGCTGGAGAAGGAGCTGTC
AGAGTCACGCCGGGTACGTAATGCACACACACAGCAGGAGAGAAATAAGC
AAAGAGAGGAGGGGAGAGAAAGAGAGAGATAGACAGATAGGAAGGGAAGG
GGGGAGAGAGAGACAGAGAGGTGGGGAGAGAGAGGGCGGGGGAGAGAGAC
ACACAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGATATCCTGGTAG
CTGAGTATGCGACCGATGAGTATTCTTCAGTGGCTGCCGTCTGGTACTGG
TACGCGGTTTAAGGACACTGCTATTGTTTGACGACGACAAATCAGCGGAG
TCACAGGAGCCATGGCCGTCGGCAATAAGCAGCCTGGAGTGTATTTCCCG
TAACAAACCACGGGAGATTGTGGCTGCCTGTTTGTACTTGTGCCGAAGGC
CCTTGGTTGAGGGTGGGATGGTTTTGAACAGACGATCACAACAACCGCAG
CGGTAACAAATGCGAGTTCAAGAGGCGGAGTATGTTCAGACTATACTTGT
GGTACTTTTCTCGCGTGTTTCTCTCCCAGCAGGTCTTGAAGCGATCAGAT
TCAGCAGCGTCCATTTCGACTGTTTTGTCCGCTGTGTCGTCTTCGACGAG
CAATGATGGGGGGGAGGGCGAGGGCGAGAGCGAAAGCGAGAGCGAAAACA
AGAGCGATGTTGATGACATGCCCTTGTGTGCCCGCCCTGGACAGATAATA
CCAAAGGTGTGCCGCAGTTCTAGCTATAATGGTATCAGTCATAAGAGTAT
CGCTTCCAGGTGATATTTGGTGGGTACCGCAGAATCATGACTAGTCGCGG
GGGATAAGTTGTATGATATACAAGTCGGTATTCGTCCAGCAATAGCGATT
GTTTGGCTGCCGCTTTCTATCACGTGCAACAATATTCGATGGTATTGCGG
GCTACGGTGGTACGGCGTGTTTGCGGTGTTGCTTGGCATTTTTTGTCTTG
CTACCGGCTACGAGATTCGTGTACGCGTCCTTCGTGACGAGGTGGGAAGG
GAAGGCAGCCGACACCAAGTACCTTACAGCTCTGACTTGTTCCCAGTTTT
TGGCTTTTTCGCTGCTTCCCCTGCCGTACTGCCACTGCCACGTGCTATCT
TGGTTGATAGCACGCCTTGCCTCGAACATGCACGATCGTTTCGCTTCGAA
CGCCTGCCTCTTGTTGCCATACCTCCACACCCCATCCCTGCTTTTGTTCG
GGACGGTCTTAACTGGCAGCTTACATTAAATGACGTCACGCCCACCGTTT
ACTGATGTTGGTGTTCGTATTATCCTCCCCTCTCGCTTACGTGTTTGTTG
GTGTATGCGTAGGAGGATGTCAAGGACAAGGACAAGGACAAGTTGGTGGA
GACGATGACCCTGCTCAAAGACGCCGCGAAGGCAATACCAATGGTAAGGG
GCGATGGCATGCCATGATTTCTCAAGATGTAAGGGTGTCTGTTGTCCACT
GGACATGATTCTTAGCTTGGTCTTGTGGGTATGAGTGCGAGTATGACGAA
TACAGTCGACTTCACCCAGGGTACCTCGTTCCACCTTGTATGGTTAGTTT
TTCTCCTCTTGACTCGTTTTTCGTTCCTCCCTGCCTCCCTCCCGTCGTTT
GTCTTTTCCGTCTTGCACTGTTCCTGAATACGTTCTGTTTTCTGTCTGAA
CAAAACCAAATAAATCGAACCGATTCAGGCACGGGGCGAGCTTGTCGGCA
AAAGCGAGCGCTGCAAGCAACATGTTGGAGAGGTGAGAACATTTGGAGCA
AAAACGGCGTGTGCATGGCGTATGTCGTACAAGGTTTCCCTCCCGAATGG
GATCGTGAGACCACAGCAGTGCCATCAAGGGGTGACGCAAGATGAACATG
GCGGTAGCACAGGCGCCGTGCGCTGCACGTTTCTCGTTATGAGAGGGCAG
ACGATACGGTACACTGCTTGCAGTTGTTCCGTGGCCTACGCGTTGGTGAA
TCTGTTATTTTTATCTATGCTGCAGCTTCCTGTTGATTGTTGTTTGCTTC
AAGCGTAGTCCTCGTTCAGCCTCGGTCTGCCTCTCATTTTTTGGCCGTAC
AACCACCGGCCATTCGTGTATGAGAGAACCTCAACATCAATGTATTGCCT
TACGATTATTGCCTGTTGTATGTGTGTGTGCGTGTATTTGCTCGCAGGCG
GGGTCCTACAACACCCTCTCACGTCTCCACCAGTCCTGCTATCACGCCGC
GTTAGGCGTCTCTCACCCTTCTCCCATCGTCATCATAATACGTCACCTCA
CGCGTGTACTTTATTCTTGATGTTCTTTCCAACTGCAACCGCAGGATGCT
GTGTCGTTTTGCGAGGCCAATAACACCAACACGACCGGCGCCTTGGACCA
CCAGCCCGGCTGCAACGCCCCCGCTACGGGCGTGGAATGTGACAAGGCGA
GGCTGCTGGTTGGTGGCCGCGAGGAAGGGGCGGGGGAGGGCAGCGCCATG
CAGGCGATGGCGACAACCGCAGACAAGTCTGGTGGGGAAGGGGAAGGTCA
AGGGCAGGACATGTCGGCCAAGGTCGCGAAGATGCAGGCAGAGGTGCGTG
CGCCTGGTTTTTGATTGGCTGCTTCGTTTCTGTTGGCGTGTGTTCTTTGT
TTTGTGTCNNNNNNNNNNNNNNNNNAACACAAGATGTAGGAGTGATTCAT
GCTGTAGAGCATGTACCCCCTCGGCGTGATGAGTTGTGGCCGACGATGGG
CGCGAACCTTCGGCGAAGCCGCAACGATGTAGATGTCATCGGCAGGCCTG
CTCGGTGTTGCTTGCACGCATATGAAGCCTTCGTCAAGGTTTCGTGTACA
GCGGTGACGTTTAATCCTGGTTGTGACCCATGGTTCGGGTGCACGCCGAG
ATGTGATGTTGTGGGTCGACTACAAGGTGTTACAACAAGTGTTGTCTTCT
TCGTTGTGGTGAGTGCGATGTGTTGGCAGCTATAGCTCGTGTCGACGGAC
GAAGGTAGCCGCGTGCTAGACCAGGTGGCTGTGGTGCTTGGTCCGTGACC
ACTGCCGTCGCTTCAAAACTGCTCCTGTATTGTAACTGGACACGTCGAAG
CCCCGAACACCCAAATATTTTTGCTCATCATGCGCTCTTGTCTTTGCCTC
CAGCCTCCAGTATTCCCGTCGGGGCGACTTAGCCAATAACCCACAAACGC
ACAGCATGGTCTTCCCAATGAGATATATCATCCTGAGAAGGATCAAGAAT
TGAGACAGACAGACCTCCACACACGTACGCTGCGCTTTGGACGAACGTTT
GCGGTGTGAGCACAGCTGGACGGCCTGCACGCAGTGCTAGACAACCTGTC
CGCCGAGAGAGCGGCCGCCGCTCTCGGGGGAGCCGCGGCTGGGAGGGAAA
GGGAGGCCAACGGAATGGACCTGTCGGGCAAGATTGAAGCGATGCAGGCA
GAGGTACAGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14704:335..3799+

>mRNA_Ecto-sp13_S_contig14704.3597.1 ID=mRNA_Ecto-sp13_S_contig14704.3597.1|Name=mRNA_Ecto-sp13_S_contig14704.3597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14704:335..3799+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGTGCCGTTTGAGGATCGCGTCGAGGAGCTGGAGAAGGAGCTGTC
AGAGTCACGCCGGGTCTTGAAGCGATCAGATTCAGCAGCGTCCATTTCGA
CTGTTTTGTCCGCTGTGTCGTCTTCGACGAGCAATGATGGGGGGGAGGGC
GAGGGCGAGAGCGAAAGCGAGAGCGAAAACAAGAGCGATGATGTCAAGGA
CAAGGACAAGGACAAGTTGGTGGAGACGATGACCCTGCTCAAAGACGCCG
CGAAGGCAATACCAATGGCACGGGGCGAGCTTGTCGGCAAAAGCGAGCGC
TGCAAGCAACATGTTGGAGAGGATGCTGTGTCGTTTTGCGAGGCCAATAA
CACCAACACGACCGGCGCCTTGGACCACCAGCCCGGCTGCAACGCCCCCG
CTACGGGCGTGGAATGTGACAAGGCGAGGCTGCTGGTTGGTGGCCGCGAG
GAAGGGGCGGGGGAGGGCAGCGCCATGCAGGCGATGGCGACAACCGCAGA
CAAGTCTGGTGGGGAAGGGGAAGGTCAAGGGCAGGACATGTCGGCCAAGG
TCGCGAAGATGCAGGCAGAGCTGGACGGCCTGCACGCAGTGCTAGACAAC
CTGTCCGCCGAGAGAGCGGCCGCCGCTCTCGGGGGAGCCGCGGCTGGGAG
GGAAAGGGAGGCCAACGGAATGGACCTGTCGGGCAAGATTGAAGCGATGC
AGGCAGAGGTACAGCAGTAG
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