mRNA_Ecto-sp13_S_contig14702.3596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14702.3596.1
Unique NamemRNA_Ecto-sp13_S_contig14702.3596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Match: A0A6H5JLS0_9PHAE (Rhomboid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS0_9PHAE)

HSP 1 Score: 448 bits (1153), Expect = 9.040e-157
Identity = 230/255 (90.20%), Postives = 236/255 (92.55%), Query Frame = 1 
Query:    1 MNFVSRAGRARSHQVLFGTQPRLPLGCGISPGIAAASAGPTMSAAVAIGQSSLARSPTVLLGRSGAQHACSSWARSRASPPWGFARAGRLPPSLQRGSRVVPPCASWANHGGRRVVGAGNRALSSFLPRGGRYSDSMVVYGVVGLNVAGTVAMFLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGVARRLGLPSVLQV 765
            MN V RAGRARSHQVLFGTQPRLPLGCG SP +A  SA  T SAAVAIGQ SLARSPTVLLGRSGA+HACSSW RSRASPPW FARAGRLP SLQ GS VVPPCASWAN GGRR VGAGNRALSSFLPRGGRYSDSM+VYGVVGLNVAGTVA++LHETQGAGGPFLFGNFMVSTYTTLMQGRLHTL TSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPG+A RLGLPSVLQV
Sbjct:    1 MNVVCRAGRARSHQVLFGTQPRLPLGCGNSPAMAT-SAARTTSAAVAIGQRSLARSPTVLLGRSGAKHACSSWVRSRASPPWSFARAGRLPRSLQHGSSVVPPCASWANQGGRRGVGAGNRALSSFLPRGGRYSDSMIVYGVVGLNVAGTVAIYLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLLTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGIASRLGLPSVLQV 254
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BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Match: D8LNG3_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG3_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 6.380e-73
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 1 
Query:  409 MVVYGVVGLNVAGTVAMFLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGVARRLGLPSVLQV 765
            MV+YGVVGLNVAGTVAM+L+E+QG GGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPG+A RLGLPSVLQV
Sbjct:    1 MVIYGVVGLNVAGTVAMYLYESQGTGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGIASRLGLPSVLQV 119
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BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Match: A0A8K0JHW0_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JHW0_9TREE)

HSP 1 Score: 56.2 bits (134), Expect = 1.480e-5
Identity = 41/116 (35.34%), Postives = 55/116 (47.41%), Query Frame = 1 
Query:  394 RYSDSMVVYGVVGLNVAGTVAMFLHETQGAGGPF--------LFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVA 717
            R     V+YG++G NV   + +     Q +   F        +  NF+VS    L  GRLHTL T  FSHSN  + A+    +Y +GP     LG   FL LYL GG  S +  +A
Sbjct:  140 RLPPMYVIYGIIGANVG--IFLVWQYAQASWTRFRDPTLYRWMSQNFIVSE-ANLAAGRLHTLLTCCFSHSNTGHIALNMLGLYFIGPATAGLLGPASFLGLYLGGGIVSSMVSLA 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLS0_9PHAE9.040e-15790.20Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
D8LNG3_ECTSI6.380e-7394.12Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A8K0JHW0_9TREE1.480e-535.34Uncharacterized protein n=2 Tax=Filobasidium flori... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14702contigEcto-sp13_S_contig14702:313..3315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop0
Start1
Seed ortholog score68.6
Seed ortholog evalue5e-09
Seed eggNOG ortholog109760.SPPG_03485T0
Model size765
KEGG koko:K09650
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.rhomboid-domain-containing protein
EggNOG OGs3A5ZS@33154,3Q6XA@4751,COG0705@1,KOG2980@2759
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-04_003970.1
EC3.4.21.105
Cds size765
COG Functional cat.T
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.698894-CDS-Ecto-sp13_S_contig14702:312..3741681462784.698894-CDS-Ecto-sp13_S_contig14702:312..374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14702 313..374 -
1681462784.7114851-CDS-Ecto-sp13_S_contig14702:649..7711681462784.7114851-CDS-Ecto-sp13_S_contig14702:649..771Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14702 650..771 -
1681462784.720199-CDS-Ecto-sp13_S_contig14702:1450..15301681462784.720199-CDS-Ecto-sp13_S_contig14702:1450..1530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14702 1451..1530 -
1681462784.7291465-CDS-Ecto-sp13_S_contig14702:2055..21241681462784.7291465-CDS-Ecto-sp13_S_contig14702:2055..2124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14702 2056..2124 -
1681462784.737622-CDS-Ecto-sp13_S_contig14702:2883..33151681462784.737622-CDS-Ecto-sp13_S_contig14702:2883..3315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14702 2884..3315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14702.3596.1prot_Ecto-sp13_S_contig14702.3596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14702 313..3315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14702.3596.1

>prot_Ecto-sp13_S_contig14702.3596.1 ID=prot_Ecto-sp13_S_contig14702.3596.1|Name=mRNA_Ecto-sp13_S_contig14702.3596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MNFVSRAGRARSHQVLFGTQPRLPLGCGISPGIAAASAGPTMSAAVAIGQ
SSLARSPTVLLGRSGAQHACSSWARSRASPPWGFARAGRLPPSLQRGSRV
VPPCASWANHGGRRVVGAGNRALSSFLPRGGRYSDSMVVYGVVGLNVAGT
VAMFLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGA
IFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGVARRLGLP
SVLQV
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mRNA from alignment at Ecto-sp13_S_contig14702:313..3315-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14702.3596.1 ID=mRNA_Ecto-sp13_S_contig14702.3596.1|Name=mRNA_Ecto-sp13_S_contig14702.3596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3003bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14702:313..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTTTGTTTCTAGAGCTGGACGCGCCCGCTCCCACCAGGTGTTGTT
TGGGACCCAACCTCGGCTGCCATTGGGGTGCGGCATTTCTCCCGGAATAG
CAGCAGCATCAGCAGGACCGACAATGTCTGCAGCCGTAGCAATTGGGCAG
AGCTCTCTTGCGCGATCCCCGACAGTTCTCCTTGGAAGAAGTGGTGCACA
GCATGCGTGCAGCAGCTGGGCACGCTCTAGAGCATCCCCACCTTGGGGCT
TTGCGAGAGCTGGGAGGCTGCCCCCGTCGCTTCAGCGCGGATCGCGCGTC
GTGCCTCCGTGTGCATCATGGGCGAACCACGGTGGCCGCCGTGTTGTTGG
TGCAGGCAATCGGGCGCTGTCCTCCTTCCTCCCTCGAGGAGGGCGTTATT
CGGACTCTATGGTCGTCTATGGTGTGGTTGGGGTGAGTGGTTCACACTTC
CAGGAGAGCAAAACACGGGATGATGAGGGAGACACGCCCACGGCCCTGTT
GTCCAGAACTCCGCCTATGTCGACACAATCCCCCCGGTGTTGTGTGTCAG
GAACGTTCTGCGAGCACTGCGCCTCTATTTCGTATCCCGACGAAAAACAT
GTAGTTGGTTGTCTTGCTCCTCACGACGTCCGGATCCAACAAGATGTGTA
TCACACCTCTTGGTTGTGTGACTAGACCCTGCCCTCTCAAAACTGCTTCT
ATGGATGTGGACGAACTACACGTAGCGGCAATGGACTACAGTAGGTATAG
ACATCTGTGTTCTTCCACGCTTCTTCGGTTGGTTGCATCGCGAATCGCGT
GCAGCACAAGTTGCCGCCTGTGGACCGTGAATTCCAGTAGCTGGAAGGCG
CCGTTCCAGGTTTTGCCCCGGGAAGCACGCGGGAAGCGGATCGTTGATGG
AAAGCACAAGAACGCGATTTTGTGGACTCTCGCGTTCGACTCTATATCAT
GGTCGGTTCTAATCTCGCTCCCTACTGTACCGTTATACCACCCTTGGAGT
GCCCGGTCTCTAACTCTCTCTTCGCGTCTACAGTGCCAACCGTTTTCTTG
CTGTGCACTCGTAATCTCTCCGTGTCGGCGGAGGTTTTCTGCTCTTTGTG
CGTCTATCTTGCTTCTTCATACCTTCTCCTTTGGGTTGTAACTTGTGCCA
TATCTCTCTTCTCTCTCTCTGGCCCCCGTGTGGATGTCCAGCTGAACGTG
GCCGGAACGGTTGCGATGTTCCTCCACGAGACTCAAGGCGCGGGCGGTCC
TTTCCTCTTTGTAAGTGCCAGTAGCAGAGACACACGAGAAGACAACCGGT
GTGGTGGTAATTTTTGTGTCTTGCGCTTTTTCTTTCCAAGCAATATTTTG
TGCTTGATGCAGTCTTCGACAGCAACATGGGGGGGAGCTGTAGTCATGTC
CTGGGAGGCCCTCCTATTGAACATGAGATGCAGCAAATTGACGCTTCAGG
AGGCATCTACGGCAGCTCTCTTGTGGTGTGTTTACCTGGCATGTGGCTGC
ATCCTCTCGCCTCTCCCCTGTTGGATGCCATTAGGTTTGTAGTCTCTCGT
CCCATGTTTTGCTGTTTCTTCCCTGCCGTCCTGTTGGGCTGGAATGGTGC
ACTATGGACGTACGAAAAATGCGACCAACCCGTGCCAAGCCTTTGCGTTG
TGAGCACCGGAACAAACCACGACTCGGCGGTTCGCAGCCCGTCCGCTGCT
TCGCCTCCTCTGGCCTTCTCTGCGCATGATGTAGCACCTCTGATGTTCCT
TCCTGTCCCCGCCGCCCAACTCGCCCCCCCTTAAGGGTAACTTCATGGTG
TCGACCTACACCACGCTGATGCAGGGGAGGCTGCACACCCTGTTCACATC
CAACTTCAGCCACAGGTATTGCCGGCGGACGCAACTGGCGTGCGCTATTG
CTCTTGGTGTATGCTCTTGCCATAGGCCTCACGGAAATAGCCGAATTTTG
CTTGCGGGATCCATCGGTGCGTGGCGTGGTGTCTTAACGCATGCTCCCCC
CTCTATTTCCCTTTCCTCACTGCGAGCGAGCAGAACCCAAAAAAAAGGTA
TGATTCCAGAAGGCTGTGCCATCGTTCACAATGTGTATCTACCTACCCGA
TCACCACCAGGACCAGAACCGACCTGGCGTTTTGAGTAGGATCTACCCTT
GCGTACTCCGCTCTTTTGAGTGAAAACCTTGCATTTCGCAACACCGACCG
GACACCGGTTCCACTTGGATACGCAGTGTGCATGCTGGGGTGAAGTCAGT
GGCCTTTGATGGCATGCCCTCCCCCCCTCGGCTTGATGTTGAGTTGCGAT
TTTTTTTTTCTATTGGTTCGAGTCAGCTTGCGGATGTTGCACTTTCGATT
CGTCAGGTTGATCAGCTCGTACTCAATCGATCTTTTTCTCTCTGGCGACC
CAATCCATCCCGGAAAAACCGAAAACGACTCCTCACCCATACCTATCCAT
GGCATCAAGGACCCCGCGCCTTCCCCCGGTTGCGTCTTCTCCGTACTCCT
GTTGTGTGGTCGTGATGCCATTCGACACAACAAAAAACACATAGCAATCT
CTGGAACGGCGCCATCTTCTCCTACATGATGTACACACTGGGGCCGACGG
CAATCCAGCACCTGGGCAGGCGGCAGTTCCTGGCGCTGTACCTCTTGGGT
GGGGCTTTCTCTCAGCGTGAGGACACCTTGTCTACGTTGATGTTCATGTT
GCTCAGCTTGTGATGCTCCCCATCACCGGTTTTTCTTCGAGAACACGTGC
TGCGCGGCATCGCGTAAGATTACCATCAAGGGTTGGACGCGAGGAAAGTA
GGGCGCTTACAAAGGCAAGGACAGCAGCAACAGCAACAACAACAAACAAC
AACAACGGCCGCATTAGCGTGCCTTCCTGTCACTCTCTTTAGACGGCCTC
ATCCACTCTGTTCTCGCCCGTGCGCTTGCTGGCGTCGGCAGTTTGTCAAG
TGGCGGGGCCGGGTGTCGCCCGCCGGCTGGGCCTCCCCTCCGTCCTCCAG
GTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14702:313..3315-

>mRNA_Ecto-sp13_S_contig14702.3596.1 ID=mRNA_Ecto-sp13_S_contig14702.3596.1|Name=mRNA_Ecto-sp13_S_contig14702.3596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14702:313..3315- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTTTGTTTCTAGAGCTGGACGCGCCCGCTCCCACCAGGTGTTGTT
TGGGACCCAACCTCGGCTGCCATTGGGGTGCGGCATTTCTCCCGGAATAG
CAGCAGCATCAGCAGGACCGACAATGTCTGCAGCCGTAGCAATTGGGCAG
AGCTCTCTTGCGCGATCCCCGACAGTTCTCCTTGGAAGAAGTGGTGCACA
GCATGCGTGCAGCAGCTGGGCACGCTCTAGAGCATCCCCACCTTGGGGCT
TTGCGAGAGCTGGGAGGCTGCCCCCGTCGCTTCAGCGCGGATCGCGCGTC
GTGCCTCCGTGTGCATCATGGGCGAACCACGGTGGCCGCCGTGTTGTTGG
TGCAGGCAATCGGGCGCTGTCCTCCTTCCTCCCTCGAGGAGGGCGTTATT
CGGACTCTATGGTCGTCTATGGTGTGGTTGGGCTGAACGTGGCCGGAACG
GTTGCGATGTTCCTCCACGAGACTCAAGGCGCGGGCGGTCCTTTCCTCTT
TGGTAACTTCATGGTGTCGACCTACACCACGCTGATGCAGGGGAGGCTGC
ACACCCTGTTCACATCCAACTTCAGCCACAGCAATCTCTGGAACGGCGCC
ATCTTCTCCTACATGATGTACACACTGGGGCCGACGGCAATCCAGCACCT
GGGCAGGCGGCAGTTCCTGGCGCTGTACCTCTTGGGTGGGGCTTTCTCTC
AGCTTTGTCAAGTGGCGGGGCCGGGTGTCGCCCGCCGGCTGGGCCTCCCC
TCCGTCCTCCAGGTA
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