prot_Ecto-sp13_S_contig14702.3596.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14702.3596.1
Unique Nameprot_Ecto-sp13_S_contig14702.3596.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length255
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Match: A0A6H5JLS0_9PHAE (Rhomboid domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS0_9PHAE)

HSP 1 Score: 448 bits (1153), Expect = 9.040e-157
Identity = 230/255 (90.20%), Postives = 236/255 (92.55%), Query Frame = 0 
Query:    1 MNFVSRAGRARSHQVLFGTQPRLPLGCGISPGIAAASAGPTMSAAVAIGQSSLARSPTVLLGRSGAQHACSSWARSRASPPWGFARAGRLPPSLQRGSRVVPPCASWANHGGRRVVGAGNRALSSFLPRGGRYSDSMVVYGVVGLNVAGTVAMFLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGVARRLGLPSVLQV 255
            MN V RAGRARSHQVLFGTQPRLPLGCG SP +A  SA  T SAAVAIGQ SLARSPTVLLGRSGA+HACSSW RSRASPPW FARAGRLP SLQ GS VVPPCASWAN GGRR VGAGNRALSSFLPRGGRYSDSM+VYGVVGLNVAGTVA++LHETQGAGGPFLFGNFMVSTYTTLMQGRLHTL TSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPG+A RLGLPSVLQV
Sbjct:    1 MNVVCRAGRARSHQVLFGTQPRLPLGCGNSPAMAT-SAARTTSAAVAIGQRSLARSPTVLLGRSGAKHACSSWVRSRASPPWSFARAGRLPRSLQHGSSVVPPCASWANQGGRRGVGAGNRALSSFLPRGGRYSDSMIVYGVVGLNVAGTVAIYLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLLTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGIASRLGLPSVLQV 254
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BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Match: D8LNG3_ECTSI (Rhomboid domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG3_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 6.380e-73
Identity = 112/119 (94.12%), Postives = 117/119 (98.32%), Query Frame = 0 
Query:  137 MVVYGVVGLNVAGTVAMFLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGVARRLGLPSVLQV 255
            MV+YGVVGLNVAGTVAM+L+E+QG GGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPG+A RLGLPSVLQV
Sbjct:    1 MVIYGVVGLNVAGTVAMYLYESQGTGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGIASRLGLPSVLQV 119
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BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Match: A0A8K0JHW0_9TREE (Uncharacterized protein n=2 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0JHW0_9TREE)

HSP 1 Score: 56.2 bits (134), Expect = 1.480e-5
Identity = 41/116 (35.34%), Postives = 55/116 (47.41%), Query Frame = 0 
Query:  132 RYSDSMVVYGVVGLNVAGTVAMFLHETQGAGGPF--------LFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGAIFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVA 239
            R     V+YG++G NV   + +     Q +   F        +  NF+VS    L  GRLHTL T  FSHSN  + A+    +Y +GP     LG   FL LYL GG  S +  +A
Sbjct:  140 RLPPMYVIYGIIGANVG--IFLVWQYAQASWTRFRDPTLYRWMSQNFIVSE-ANLAAGRLHTLLTCCFSHSNTGHIALNMLGLYFIGPATAGLLGPASFLGLYLGGGIVSSMVSLA 252
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14702.3596.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JLS0_9PHAE9.040e-15790.20Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
D8LNG3_ECTSI6.380e-7394.12Rhomboid domain-containing protein n=1 Tax=Ectocar... [more]
A0A8K0JHW0_9TREE1.480e-535.34Uncharacterized protein n=2 Tax=Filobasidium flori... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR035952Rhomboid-like superfamilyGENE3D1.20.1540.10coord: 132..249
e-value: 4.2E-7
score: 31.6
IPR022764Peptidase S54, rhomboid domainPFAMPF01694Rhomboidcoord: 180..239
e-value: 5.4E-6
score: 26.5
NoneNo IPR availablePANTHERPTHR43731FAMILY NOT NAMEDcoord: 44..237
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..178
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 137..155
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..136
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 156..160
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 179..255
NoneNo IPR availableSUPERFAMILY144091Rhomboid-likecoord: 135..239

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14702contigEcto-sp13_S_contig14702:313..3315 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14702.3596.1mRNA_Ecto-sp13_S_contig14702.3596.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14702 313..3315 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14702.3596.1 ID=prot_Ecto-sp13_S_contig14702.3596.1|Name=mRNA_Ecto-sp13_S_contig14702.3596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MNFVSRAGRARSHQVLFGTQPRLPLGCGISPGIAAASAGPTMSAAVAIGQ
SSLARSPTVLLGRSGAQHACSSWARSRASPPWGFARAGRLPPSLQRGSRV
VPPCASWANHGGRRVVGAGNRALSSFLPRGGRYSDSMVVYGVVGLNVAGT
VAMFLHETQGAGGPFLFGNFMVSTYTTLMQGRLHTLFTSNFSHSNLWNGA
IFSYMMYTLGPTAIQHLGRRQFLALYLLGGAFSQLCQVAGPGVARRLGLP
SVLQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035952Rhomboid-like_sf
IPR022764Peptidase_S54_rhomboid_dom