mRNA_Ecto-sp13_S_contig147.3593.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig147.3593.1
Unique NamemRNA_Ecto-sp13_S_contig147.3593.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig147.3593.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.800e-32
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 HRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR 171
            HRCSHAGCGR FDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR
Sbjct:  373 HRCSHAGCGRSFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR 429
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig147.3593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3M8_ECTSI2.800e-3298.25Similar to metal response element-binding transcri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig147contigEcto-sp13_S_contig147:36301..36474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.4570546-CDS-Ecto-sp13_S_contig147:36300..364741681462784.4570546-CDS-Ecto-sp13_S_contig147:36300..36474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 36301..36474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig147.3593.1prot_Ecto-sp13_S_contig147.3593.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig147 36301..36474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig147.3593.1

>prot_Ecto-sp13_S_contig147.3593.1 ID=prot_Ecto-sp13_S_contig147.3593.1|Name=mRNA_Ecto-sp13_S_contig147.3593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
HRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHL
KEKHPFR*
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mRNA from alignment at Ecto-sp13_S_contig147:36301..36474-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig147.3593.1 ID=mRNA_Ecto-sp13_S_contig147.3593.1|Name=mRNA_Ecto-sp13_S_contig147.3593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:36301..36474- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGGTGCTCCCACGCTGGGTGCGGGCGGTTCTTCGACCGGCCGAGCAA
GCTGGCCGCCCACGAGAAGACCCACAAGGCCCGCTTCGTGTGCCAGTTCG
ACGGCTGCGGGGCGGCCTTCGTCCTTGCGTCGGGCCTAAACCTCCACCTC
AAGGAGAAGCATCCCTTCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig147:36301..36474-

>mRNA_Ecto-sp13_S_contig147.3593.1 ID=mRNA_Ecto-sp13_S_contig147.3593.1|Name=mRNA_Ecto-sp13_S_contig147.3593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:36301..36474- (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGGTGCTCCCACGCTGGGTGCGGGCGGTTCTTCGACCGGCCGAGCAA
GCTGGCCGCCCACGAGAAGACCCACAAGGCCCGCTTCGTGTGCCAGTTCG
ACGGCTGCGGGGCGGCCTTCGTCCTTGCGTCGGGCCTAAACCTCCACCTC
AAGGAGAAGCATCCCTTCAGGTGA
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