prot_Ecto-sp13_S_contig147.3593.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig147.3593.1
Unique Nameprot_Ecto-sp13_S_contig147.3593.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length58
Homology
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BLAST of mRNA_Ecto-sp13_S_contig147.3593.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 2.800e-32
Identity = 56/57 (98.25%), Postives = 56/57 (98.25%), Query Frame = 0 
Query:    1 HRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR 57
            HRCSHAGCGR FDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR
Sbjct:  373 HRCSHAGCGRSFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFR 429
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig147.3593.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3M8_ECTSI2.800e-3298.25Similar to metal response element-binding transcri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 1..25
e-value: 0.012
score: 24.8
coord: 29..54
e-value: 0.024
score: 23.8
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 1..25
e-value: 2.3E-4
score: 21.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 31..54
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 3..25
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 29..57
score: 9.411
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 1..25
score: 10.512
NoneNo IPR availableGENE3D3.30.160.60coord: 1..26
e-value: 6.5E-6
score: 28.0
NoneNo IPR availableGENE3D3.30.160.60coord: 27..56
e-value: 1.9E-5
score: 26.3
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 2..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig147contigEcto-sp13_S_contig147:36301..36474 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig147.3593.1mRNA_Ecto-sp13_S_contig147.3593.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig147 36301..36474 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig147.3593.1 ID=prot_Ecto-sp13_S_contig147.3593.1|Name=mRNA_Ecto-sp13_S_contig147.3593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
HRCSHAGCGRFFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHL
KEKHPFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf