prot_Ecto-sp13_S_contig147.3592.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig147.3592.1
Unique Nameprot_Ecto-sp13_S_contig147.3592.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length74
Homology
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BLAST of mRNA_Ecto-sp13_S_contig147.3592.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.160e-36
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0 
Query:   10 KLAIRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTE 74
            K   RCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTE
Sbjct:  425 KHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTE 489
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BLAST of mRNA_Ecto-sp13_S_contig147.3592.1 vs. uniprot
Match: U5ENM7_9DIPT (Putative matotopetli (Fragment) n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5ENM7_9DIPT)

HSP 1 Score: 48.5 bits (114), Expect = 9.710e-5
Identity = 22/62 (35.48%), Postives = 32/62 (51.61%), Query Frame = 0 
Query:   12 AIRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHT 73
            A  C +C K + +   +  H   H      + IRP+HC V GC +AFT + +L  H R +HT
Sbjct:  352 AFLCDICGKTYTQSSHLWQHLRFH------NGIRPFHCTVEGCNRAFTVRPDLKDHIRKSHT 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig147.3592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3M8_ECTSI1.160e-3695.38Similar to metal response element-binding transcri... [more]
U5ENM7_9DIPT9.710e-535.48Putative matotopetli (Fragment) n=1 Tax=Corethrell... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 47..72
e-value: 8.8E-4
score: 28.6
coord: 13..35
e-value: 0.019
score: 24.1
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 47..72
e-value: 1.9E-5
score: 24.8
coord: 14..35
e-value: 2.5E-4
score: 21.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 49..72
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 13..40
score: 9.162
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 47..74
score: 13.401
NoneNo IPR availableGENE3D3.30.160.60coord: 14..49
e-value: 1.2E-5
score: 27.0
NoneNo IPR availableGENE3D3.30.160.60coord: 50..74
e-value: 4.9E-11
score: 44.3
NoneNo IPR availablePANTHERPTHR24404ZINC FINGER PROTEINcoord: 14..73
NoneNo IPR availablePANTHERPTHR24404:SF59ZINC FINGER PROTEIN 853-RELATEDcoord: 14..73
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 14..70

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig147contigEcto-sp13_S_contig147:35375..35596 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig147.3592.1mRNA_Ecto-sp13_S_contig147.3592.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig147 35375..35596 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig147.3592.1 ID=prot_Ecto-sp13_S_contig147.3592.1|Name=mRNA_Ecto-sp13_S_contig147.3592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
QISVTEPPTKLAIRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCN
VRGCGKAFTEKRNLNAHRRTAHTE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf