mRNA_Ecto-sp13_S_contig147.3592.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig147.3592.1
Unique NamemRNA_Ecto-sp13_S_contig147.3592.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig147.3592.1 vs. uniprot
Match: D7G3M8_ECTSI (Similar to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.160e-36
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:   28 KLAIRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTE 222
            K   RCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTE
Sbjct:  425 KHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTE 489
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BLAST of mRNA_Ecto-sp13_S_contig147.3592.1 vs. uniprot
Match: U5ENM7_9DIPT (Putative matotopetli (Fragment) n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=U5ENM7_9DIPT)

HSP 1 Score: 48.5 bits (114), Expect = 9.710e-5
Identity = 22/62 (35.48%), Postives = 32/62 (51.61%), Query Frame = 1 
Query:   34 AIRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHT 219
            A  C +C K + +   +  H   H      + IRP+HC V GC +AFT + +L  H R +HT
Sbjct:  352 AFLCDICGKTYTQSSHLWQHLRFH------NGIRPFHCTVEGCNRAFTVRPDLKDHIRKSHT 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig147.3592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3M8_ECTSI1.160e-3695.38Similar to metal response element-binding transcri... [more]
U5ENM7_9DIPT9.710e-535.48Putative matotopetli (Fragment) n=1 Tax=Corethrell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig147contigEcto-sp13_S_contig147:35375..35596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size222
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462784.4288113-CDS-Ecto-sp13_S_contig147:35374..355961681462784.4288113-CDS-Ecto-sp13_S_contig147:35374..35596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig147 35375..35596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig147.3592.1prot_Ecto-sp13_S_contig147.3592.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig147 35375..35596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig147.3592.1

>prot_Ecto-sp13_S_contig147.3592.1 ID=prot_Ecto-sp13_S_contig147.3592.1|Name=mRNA_Ecto-sp13_S_contig147.3592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
QISVTEPPTKLAIRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCN
VRGCGKAFTEKRNLNAHRRTAHTE
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mRNA from alignment at Ecto-sp13_S_contig147:35375..35596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig147.3592.1 ID=mRNA_Ecto-sp13_S_contig147.3592.1|Name=mRNA_Ecto-sp13_S_contig147.3592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:35375..35596- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATTTCAGTAACCGAACCCCCAACGAAATTGGCCATCAGGTGCGGGGT
ATGCGACAAGGTTTTCGATCGGGAGGACAAAATGCAGATTCACCAAGCAA
CGCACGCCAGGGCGGGCGACGGGGACTTCATCCGGCCCTACCATTGTAAC
GTGCGTGGCTGCGGGAAGGCCTTCACAGAGAAGCGGAACCTTAACGCTCA
CCGTCGCACAGCGCATACTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig147:35375..35596-

>mRNA_Ecto-sp13_S_contig147.3592.1 ID=mRNA_Ecto-sp13_S_contig147.3592.1|Name=mRNA_Ecto-sp13_S_contig147.3592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig147:35375..35596- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATTTCAGTAACCGAACCCCCAACGAAATTGGCCATCAGGTGCGGGGT
ATGCGACAAGGTTTTCGATCGGGAGGACAAAATGCAGATTCACCAAGCAA
CGCACGCCAGGGCGGGCGACGGGGACTTCATCCGGCCCTACCATTGTAAC
GTGCGTGGCTGCGGGAAGGCCTTCACAGAGAAGCGGAACCTTAACGCTCA
CCGTCGCACAGCGCATACTGAG
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