mRNA_Ecto-sp13_S_contig14670.3576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14670.3576.1
Unique NamemRNA_Ecto-sp13_S_contig14670.3576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI)

HSP 1 Score: 167 bits (422), Expect = 4.360e-48
Identity = 81/101 (80.20%), Postives = 84/101 (83.17%), Query Frame = 1 
Query:   13 EQNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEVEGRCK 315
            +QNFSNYSAFHFRSKVLPRMVEEAGHDR           + T  AMFTEPADQSVWWYHHFLLTWADDG DSC DSERYEN+LRAEAATLGELIEVE RCK
Sbjct:  205 KQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDE---LDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCK 302
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 6.570e-18
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 1 
Query:   16 QNFSNYSAFHFRSKVLPRMVEEAGHD---RLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEVEGRCK 315
            +NFSNYSAFH+RSK+LP + E  G      L +++          QA FTEP DQS WWYH FL+ WA +        ++Y  +L+ E   + EL+ VE RCK
Sbjct:  189 ENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQE-----LEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCK 286
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A7S2UPE6_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPE6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.030e-14
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1 
Query:    4 TAAEQNFSNYSAFHFRSKVLPRMV---EEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYEN----VLRAEAATLGELIEVE-GRCK 315
            T  + NFSN SAFH+RSK+LP ++   +++    LAK++         Q A+FTEP DQ+ WWYH FLL WA    +   + +  +     +L  EA TL +LIE E  +CK
Sbjct:  311 TKMDANFSNCSAFHYRSKLLPWVLIHSDDSDKLALAKEE-----LELVQNAIFTEPDDQTAWWYHRFLLQWAQPNNNDADNDDNVQKEFCQLLEQEAETLRDLIETEENQCK 417
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A6S8XW41_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XW41_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.580e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1 
Query:   16 QNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEVE-GRCK 315
            QNFSN SAFH+RSK+LP ++      RL   +         + A+FTEP DQ+ WWY  F+L+W  D +    D E Y+ +L  E  ++ +L++ E G+CK
Sbjct: 1045 QNFSNGSAFHYRSKLLP-LIHTENESRLTS-EVINEELEIIRNAVFTEPDDQTSWWYFRFILSWMRDESTKTLDDEEYKRILYQEWESIHDLVDAEDGQCK 1143
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 4.760e-13
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:    4 TAAEQNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPT-PPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEVEGRCK 315
            T  + NFSNYSA+H+RSK+LP +   AG +  A+            + A FT P D S W+YH +L+     GA +      +E ++RAE   + EL+E+E  CK
Sbjct:  168 TKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECK 272
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A7S1ZUZ6_TRICV (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZUZ6_TRICV)

HSP 1 Score: 70.9 bits (172), Expect = 2.130e-12
Identity = 46/132 (34.85%), Postives = 66/132 (50.00%), Query Frame = 1 
Query:   13 EQNFSNYSAFHFRSKVLPRMV-------EEAGHD-----RLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWAD---------------DGADSCCDSE---RYENVLRAEAATLGELIEVEG-RCK 315
            E NFSN SAFH+RSK+LP M+       EE G +       A+ D      +  + A +TEP DQ+ WWYH F+++WA                   D+  + E    + ++L  EA +L +L+E EG RCK
Sbjct:   59 ESNFSNGSAFHYRSKLLPLMLDMRVRESEEGGEEGEEVAATARIDLAKEELDLVRDAAYTEPDDQTAWWYHRFVVSWASPLTLPHLSHAPAPSSSPPDALLEEEDVLAFVDLLEEEAFSLRDLVEAEGGRCK 190
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A7R9U2X8_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2X8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.320e-12
Identity = 42/98 (42.86%), Postives = 52/98 (53.06%), Query Frame = 1 
Query:   19 NFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEVEGRC 312
            NFSNYSAFH RS++L  + E  G D+++         +  QQ   T P DQS WWY+ FLL    D AD     E    +LR E   L EL+EVE  C
Sbjct:  192 NFSNYSAFHERSRILASLAEY-GEDKISTLQQE---LDFVQQITVTAPDDQSAWWYYRFLLAAVTDDAD--IPIEEKLRLLRQEVGRLNELVEVELEC 283
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A3G2RZ20_9BASI (Geranylgeranyl transferase type-2 subunit alpha n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2RZ20_9BASI)

HSP 1 Score: 68.9 bits (167), Expect = 2.170e-11
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:    1 LTAAEQNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEVEGRCKVC 321
            LT  EQNFSN+SA+H RSK+LPR+ +    D  A+           QQAM+T+P DQS+W YH +L++  D   ++          L+ +   + EL E+E   K C
Sbjct:  207 LTKIEQNFSNFSAWHNRSKLLPRIWDGEKLDAAARSQQRQAEFELLQQAMYTDPGDQSIWIYHRWLVS-LDPNLET----------LKEQIQVIHELAEMEPESKWC 302
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A5C3E6R1_9BASI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E6R1_9BASI)

HSP 1 Score: 67.8 bits (164), Expect = 2.650e-11
Identity = 44/119 (36.97%), Postives = 60/119 (50.42%), Query Frame = 1 
Query:    1 LTAAEQNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLL-------TWADDGADSCCDSERYENVLRAEAATLGELIEVEGRCKVCACLLA 336
            L   E NFSN+SA+H RSK+LP +    G     +           +QAM+T+P+DQSVW+YH +L+       T  + G  +   S R   VL  E   + EL E+E   K CA  LA
Sbjct:  104 LKKIESNFSNFSAWHQRSKLLPHLWTAKGLGTEQRDAEIDAELELVKQAMYTDPSDQSVWFYHRWLVELLSPSHTQQEQGEPT---SARQIKVLEEEVGVIEELFELEPDSKWCAISLA 219
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BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Match: A0A2Z6SNF0_9GLOM (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6SNF0_9GLOM)

HSP 1 Score: 68.6 bits (166), Expect = 2.820e-11
Identity = 43/116 (37.07%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:    4 TAAEQNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAMFTEPADQSVWWYHHFLLTWADDGADSCCD----------SERYENVLRAEAATLGELIEVEGRCKVC 321
            T   Q+FSNYSA+H RSK+LP +++E   D L KK          + A +T+P DQS W YH +L+    + + S  D          SER E +L+ E   + EL+E+E   K C
Sbjct:  175 TKINQSFSNYSAWHQRSKLLPILIKEKNLDELEKKKLIDKEFELVKAAFYTDPDDQSAWLYHRWLIGQGSNISTSQMDEEIKDSSIKSSERIE-LLQREINVVRELLELEPDSKFC 289
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14670.3576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK31_ECTSI4.360e-4880.20Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A835Z1Z5_9STRA6.570e-1842.72Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7S2UPE6_9STRA1.030e-1440.18Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A6S8XW41_9STRA1.580e-1439.60Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0M0JE27_9EUKA4.760e-1337.14Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7S1ZUZ6_TRICV2.130e-1234.85Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A7R9U2X8_9STRA4.320e-1242.86Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A3G2RZ20_9BASI2.170e-1137.38Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A5C3E6R1_9BASI2.650e-1136.97Geranylgeranyl transferase type-2 subunit alpha n=... [more]
A0A2Z6SNF0_9GLOM2.820e-1137.07Geranylgeranyl transferase type-2 subunit alpha n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14670contigEcto-sp13_S_contig14670:95..991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score166.0
Seed ortholog evalue1e-38
Seed eggNOG ortholog2880.D8LK31
Preferred nameRABGGTA
Model size336
KEGG koko:K14050,ko:K20306
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0004659,GO:0004661,GO:0004663,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0005968,GO:0006464,GO:0006605,GO:0006612,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0008152,GO:0008318,GO:0009987,GO:0010035,GO:0010038,GO:0010941,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016740,GO:0016765,GO:0017016,GO:0017137,GO:0018342,GO:0018344,GO:0019538,GO:0019899,GO:0022607,GO:0031267,GO:0031974,GO:0031981,GO:0032501,GO:0032991,GO:0033036,GO:0034613,GO:0036211,GO:0042221,GO:0042579,GO:0042886,GO:0042981,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046686,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050953,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090150,GO:0097354,GO:0140096,GO:1901564,GO:1902494,GO:1990234,GO:1990778
Exons2
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
EC2.5.1.60
Cds size336
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01006,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462783.2047486-CDS-Ecto-sp13_S_contig14670:94..1891681462783.2047486-CDS-Ecto-sp13_S_contig14670:94..189Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14670 95..189 +
1681462783.2154887-CDS-Ecto-sp13_S_contig14670:750..9911681462783.2154887-CDS-Ecto-sp13_S_contig14670:750..991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14670 751..991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14670.3576.1prot_Ecto-sp13_S_contig14670.3576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14670 95..991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14670.3576.1

>prot_Ecto-sp13_S_contig14670.3576.1 ID=prot_Ecto-sp13_S_contig14670.3576.1|Name=mRNA_Ecto-sp13_S_contig14670.3576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
LTAAEQNFSNYSAFHFRSKVLPRMVEEAGHDRLAKKDPTPPYANTTQQAM
FTEPADQSVWWYHHFLLTWADDGADSCCDSERYENVLRAEAATLGELIEV
EGRCKVCACLLA
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mRNA from alignment at Ecto-sp13_S_contig14670:95..991+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14670.3576.1 ID=mRNA_Ecto-sp13_S_contig14670.3576.1|Name=mRNA_Ecto-sp13_S_contig14670.3576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14670:95..991+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCGCGGCGGAACAGAACTTCAGCAACTACAGCGCGTTCCACTTCCG
GAGTAAGGTTCTGCCGAGGATGGTGGAGGAGGCCGGCCACGACCGGTGGC
AGCTGCTGTCCGACGAGCTAAATCTCACGCATGACGTGAGTGTTCTTGGC
TTGTTGCGTTACGCTGCAACAACGAACCGTACCTGTTCGAATCGGACGTT
GCTGTACCTCGCATTTGCGCTTGTTTTTCTTTGGTGAGCCTAGTGCTCTT
CATCGAACACCTTCGTTCGATGTGTCTTGCAAGTGTTCGTGCAACGAGAG
TGGGCATGGCTGCGCGCCTGGTGTGTTTGTGTGTGTGCGTGTCTATTATT
TGCATCGACCACGCGAACCGGCCGACCAATGAAAAGACGTCAGTCTCAGT
GCAGTTGAAAACGCACAAAAAAAGAAAAACAGTTCTAAATGCCATGAAAC
TGGTGTGTGGGGGTGGGGGTGGGGGTGGGGAGGTTTCGTGTCGTGTGTGA
TTTTTCTAAAGAGCGGGCATCGACCGGGCTACCGGTTGACCAATGAACAA
GGACGCCTGTCTTATGGTGTGTTGCGAGAGAGTGTGGCTTGTGTGTTGCG
CTCCGCGTATTTTTAGCGAGTGCATCGGGCAGGGGGTTCGCCCATTGAAC
CGAAAGTCTCGCAAAAAAGGATCCGACCCCCCCCTACGCGAACACTACAC
AACAGGCAATGTTCACGGAGCCGGCGGACCAGAGCGTCTGGTGGTACCAC
CACTTCCTCCTCACGTGGGCGGACGACGGCGCCGACAGCTGCTGCGACTC
GGAACGTTACGAGAACGTTCTCCGCGCGGAGGCGGCCACTCTGGGGGAGC
TGATAGAGGTGGAGGGTCGGTGCAAGGTGTGTGCCTGCTTGCTCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14670:95..991+

>mRNA_Ecto-sp13_S_contig14670.3576.1 ID=mRNA_Ecto-sp13_S_contig14670.3576.1|Name=mRNA_Ecto-sp13_S_contig14670.3576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14670:95..991+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCACCGCGGCGGAACAGAACTTCAGCAACTACAGCGCGTTCCACTTCCG
GAGTAAGGTTCTGCCGAGGATGGTGGAGGAGGCCGGCCACGACCGTCTCG
CAAAAAAGGATCCGACCCCCCCCTACGCGAACACTACACAACAGGCAATG
TTCACGGAGCCGGCGGACCAGAGCGTCTGGTGGTACCACCACTTCCTCCT
CACGTGGGCGGACGACGGCGCCGACAGCTGCTGCGACTCGGAACGTTACG
AGAACGTTCTCCGCGCGGAGGCGGCCACTCTGGGGGAGCTGATAGAGGTG
GAGGGTCGGTGCAAGGTGTGTGCCTGCTTGCTCGCG
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