prot_Ecto-sp13_S_contig14656.3565.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14656.3565.1
Unique Nameprot_Ecto-sp13_S_contig14656.3565.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length508
Homology
BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 760 bits (1962), Expect = 4.450e-249
Identity = 443/468 (94.66%), Postives = 449/468 (95.94%), Query Frame = 0
Query:   42 RPPVASGICVERRMVHFTDVPRIPLGARPAMGSRREDAAGGPGDWPPPLPPPPVCFSPSGRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSVRRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEGNVLLRALGQQPARSSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LPAARFTACALGETGYCALASSRLAAGDEPGAAAAVLRPVHELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPGSWVTIDCFSGAGGGGRVPRGAAGGARAGTTPDVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLFVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTG 508
            RPPVASGICVERRMVHFT VPRIPLGA+PA+ SR E+AAG PGDWPPPLP PPVCFSPSGRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWS+RRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEG   LRALG QPA SSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPAAR+TACALGETGYCALASSRLAAGDEPGAAAAVL PVHELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDP SWVTIDCFSGAGGGG VPRGA  GA A TTP+VPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNL VAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTG
Sbjct: 2217 RPPVASGICVERRMVHFTHVPRIPLGAKPAVDSRGEEAAGAPGDWPPPLPAPPVCFSPSGRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSIRRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEGTGPLRALGHQPAGSSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAARYTACALGETGYCALASSRLAAGDEPGAAAAVLLPVHELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPESWVTIDCFSGAGGGGGVPRGATRGAGAATTPNVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLIVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTG 2684          
BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Match: A0A7S2Y2I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2I7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.110e-12
Identity = 65/192 (33.85%), Postives = 90/192 (46.88%), Query Frame = 0
Query:  294 FTACALGETGYCALASSRLAAGDEPGAAAAVLRPVHELEVYTVNGLLTARVSG--LSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPGSWVTIDCFSGAGGGGRVPRGAAGGARAGTTPDVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLFVAVGSMIISAPGKVLK 483
            FT C L   GY  LA   L  G  P         + +LEV+TVNG    RV+G  L   V  +  +  GE+++V G  +M+EVR   SLA +   D    +     +GA G G +                   +  V LGPN  APVL+ +G  DG +L Q+ PD E W  NN   AV S ++ AP +++K
Sbjct:   43 FTHCGLSALGYVVLAVGYL--GQMPPGG----EHITQLEVWTVNG---QRVAGSVLRRRVHSMQVSQCGEMIIVAGSQMMVEVRETCSLARLRRFDFQPRLATPTHAGAQGPGLM------------------DLTSVTLGPNLGAPVLMVMGAEDGGILFQSFPDMERWWMNNSSTAV-SQLVGAPLRIVK 206          
BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Match: A0A5J4ZNT3_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZNT3_9ASTE)

HSP 1 Score: 58.5 bits (140), Expect = 3.050e-5
Identity = 50/159 (31.45%), Postives = 76/159 (47.80%), Query Frame = 0
Query:  102 RYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSVRRLAP---------------------NYISDSLRRPTARRC---PALVVRGHGGPVTACAVSDGLGLALTCSDGR-ALLTAIEGNVLLRAL 235
            + + +GGH   ++ +   D   G    E A  GH APVTCLAL    + DS+ +++G+ D TA+LW + R +                      N I++ L   + RR    P  ++RGH G V  C VS  LG+ ++CS+    LL +I    L+R L
Sbjct: 2649 KEIITGGHVDNSVRLISPD---GAKTLETA-RGHCAPVTCLAL----SPDSNYLVTGSQDTTAILWRIHRASTSRSSSIAETSAGXXXXXXXXXNTIANILADKSRRRRIEGPIHILRGHLGEVICCCVSSDLGIVVSCSNSSDVLLYSIRRGRLIRRL 2799          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE4.450e-24994.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y2I7_9STRA2.110e-1233.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A5J4ZNT3_9ASTE3.050e-531.45Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 337..375
e-value: 210.0
score: 2.3
coord: 187..225
e-value: 8.3
score: 11.2
coord: 125..168
e-value: 0.055
score: 22.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 132..168
e-value: 0.0036
score: 18.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 132..170
score: 8.737
NoneNo IPR availablePANTHERPTHR13743BEIGE/BEACH-RELATEDcoord: 123..452
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 95..472

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14656contigEcto-sp13_S_contig14656:733..3138 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14656.3565.1mRNA_Ecto-sp13_S_contig14656.3565.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14656 733..3138 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14656.3565.1 ID=prot_Ecto-sp13_S_contig14656.3565.1|Name=mRNA_Ecto-sp13_S_contig14656.3565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=508bp
MNASDTDQQQQLSSGSGTGGGGGSSSNSSPRQRRRRRTQNNRPPVASGIC
VERRMVHFTDVPRIPLGARPAMGSRREDAAGGPGDWPPPLPPPPVCFSPS
GRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAK
DSDLVLSGAADGTALLWSVRRLAPNYISDSLRRPTARRCPALVVRGHGGP
VTACAVSDGLGLALTCSDGRALLTAIEGNVLLRALGQQPARSSVGGGGRG
GVLTTAAAVGGGGEAATGGGGGRESSAAMPQQQQQQQQLPAARFTACALG
ETGYCALASSRLAAGDEPGAAAAVLRPVHELEVYTVNGLLTARVSGLSGA
VRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPGSWVTIDCFSGA
GGGGRVPRGAAGGARAGTTPDVPPSVECVELGPNPNAPVLVCVGTSDGSL
LVQALPDAEEWLRNNLFVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGA
GGLVNTTG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf