mRNA_Ecto-sp13_S_contig14656.3565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14656.3565.1
Unique NamemRNA_Ecto-sp13_S_contig14656.3565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 760 bits (1962), Expect = 4.450e-249
Identity = 443/468 (94.66%), Postives = 449/468 (95.94%), Query Frame = 1 
Query:  124 RPPVASGICVERRMVHFTDVPRIPLGARPAMGSRREDAAGGPGDWPPPLPPPPVCFSPSGRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSVRRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEGNVLLRALGQQPARSSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LPAARFTACALGETGYCALASSRLAAGDEPGAAAAVLRPVHELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPGSWVTIDCFSGAGGGGRVPRGAAGGARAGTTPDVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLFVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTG 1524
            RPPVASGICVERRMVHFT VPRIPLGA+PA+ SR E+AAG PGDWPPPLP PPVCFSPSGRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWS+RRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEG   LRALG QPA SSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LPAAR+TACALGETGYCALASSRLAAGDEPGAAAAVL PVHELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDP SWVTIDCFSGAGGGG VPRGA  GA A TTP+VPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNL VAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTG
Sbjct: 2217 RPPVASGICVERRMVHFTHVPRIPLGAKPAVDSRGEEAAGAPGDWPPPLPAPPVCFSPSGRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSIRRLAPNYISDSLRRPTARRCPALVVRGHGGPVTACAVSDGLGLALTCSDGRALLTAIEGTGPLRALGHQPAGSSVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPAARYTACALGETGYCALASSRLAAGDEPGAAAAVLLPVHELEVYTVNGLLTARVSGLSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPESWVTIDCFSGAGGGGGVPRGATRGAGAATTPNVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLIVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGAGGLVNTTG 2684
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BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Match: A0A7S2Y2I7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2I7_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.110e-12
Identity = 65/192 (33.85%), Postives = 90/192 (46.88%), Query Frame = 1 
Query:  880 FTACALGETGYCALASSRLAAGDEPGAAAAVLRPVHELEVYTVNGLLTARVSG--LSGAVRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPGSWVTIDCFSGAGGGGRVPRGAAGGARAGTTPDVPPSVECVELGPNPNAPVLVCVGTSDGSLLVQALPDAEEWLRNNLFVAVGSMIISAPGKVLK 1449
            FT C L   GY  LA   L  G  P         + +LEV+TVNG    RV+G  L   V  +  +  GE+++V G  +M+EVR   SLA +   D    +     +GA G G +                   +  V LGPN  APVL+ +G  DG +L Q+ PD E W  NN   AV S ++ AP +++K
Sbjct:   43 FTHCGLSALGYVVLAVGYL--GQMPPGG----EHITQLEVWTVNG---QRVAGSVLRRRVHSMQVSQCGEMIIVAGSQMMVEVRETCSLARLRRFDFQPRLATPTHAGAQGPGLM------------------DLTSVTLGPNLGAPVLMVMGAEDGGILFQSFPDMERWWMNNSSTAV-SQLVGAPLRIVK 206
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BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Match: A0A5J4ZNT3_9ASTE (Uncharacterized protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZNT3_9ASTE)

HSP 1 Score: 58.5 bits (140), Expect = 3.050e-5
Identity = 50/159 (31.45%), Postives = 76/159 (47.80%), Query Frame = 1 
Query:  304 RYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAKDSDLVLSGAADGTALLWSVRRLAP---------------------NYISDSLRRPTARRC---PALVVRGHGGPVTACAVSDGLGLALTCSDGR-ALLTAIEGNVLLRAL 705
            + + +GGH   ++ +   D   G    E A  GH APVTCLAL    + DS+ +++G+ D TA+LW + R +                      N I++ L   + RR    P  ++RGH G V  C VS  LG+ ++CS+    LL +I    L+R L
Sbjct: 2649 KEIITGGHVDNSVRLISPD---GAKTLETA-RGHCAPVTCLAL----SPDSNYLVTGSQDTTAILWRIHRASTSRSSSIAETSAGXXXXXXXXXNTIANILADKSRRRRIEGPIHILRGHLGEVICCCVSSDLGIVVSCSNSSDVLLYSIRRGRLIRRL 2799
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14656.3565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KST8_9PHAE4.450e-24994.66Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y2I7_9STRA2.110e-1233.85Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A5J4ZNT3_9ASTE3.050e-531.45Uncharacterized protein n=1 Tax=Nyssa sinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14656contigEcto-sp13_S_contig14656:733..3138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score216.5
Seed ortholog evalue2.9e-53
Seed eggNOG ortholog2880.D8LFY8
Model size1525
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.platelet formation
EggNOG OGsKOG1787@1,KOG1787@2759
Cds size1524
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462782.4057481-CDS-Ecto-sp13_S_contig14656:732..8971681462782.4057481-CDS-Ecto-sp13_S_contig14656:732..897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14656 733..897 -
1681462782.41672-CDS-Ecto-sp13_S_contig14656:1099..20831681462782.41672-CDS-Ecto-sp13_S_contig14656:1099..2083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14656 1100..2083 -
1681462782.4283686-CDS-Ecto-sp13_S_contig14656:2763..31381681462782.4283686-CDS-Ecto-sp13_S_contig14656:2763..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14656 2764..3138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14656.3565.1prot_Ecto-sp13_S_contig14656.3565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14656 733..3138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14656.3565.1

>prot_Ecto-sp13_S_contig14656.3565.1 ID=prot_Ecto-sp13_S_contig14656.3565.1|Name=mRNA_Ecto-sp13_S_contig14656.3565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=508bp
MNASDTDQQQQLSSGSGTGGGGGSSSNSSPRQRRRRRTQNNRPPVASGIC
VERRMVHFTDVPRIPLGARPAMGSRREDAAGGPGDWPPPLPPPPVCFSPS
GRYLFSGGHESGALLMWQFDYNTGQVCGEMALHGHSAPVTCLALCGLEAK
DSDLVLSGAADGTALLWSVRRLAPNYISDSLRRPTARRCPALVVRGHGGP
VTACAVSDGLGLALTCSDGRALLTAIEGNVLLRALGQQPARSSVGGGGRG
GVLTTAAAVGGGGEAATGGGGGRESSAAMPQQQQQQQQLPAARFTACALG
ETGYCALASSRLAAGDEPGAAAAVLRPVHELEVYTVNGLLTARVSGLSGA
VRCLSTAGRGELLVVGGDGLMLEVRTMASLAPVWSLDPGSWVTIDCFSGA
GGGGRVPRGAAGGARAGTTPDVPPSVECVELGPNPNAPVLVCVGTSDGSL
LVQALPDAEEWLRNNLFVAVGSMIISAPGKVLKGTVNTVHSIATKSIRGA
GGLVNTTG
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mRNA from alignment at Ecto-sp13_S_contig14656:733..3138-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14656.3565.1 ID=mRNA_Ecto-sp13_S_contig14656.3565.1|Name=mRNA_Ecto-sp13_S_contig14656.3565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14656:733..3138- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGCCAGCGACACTGACCAGCAGCAACAGCTTAGCAGCGGCTCCGG
TACGGGCGGCGGTGGCGGCAGCAGCAGCAACAGCTCTCCCCGGCAGCGGA
GACGTCGCCGGACGCAGAATAATCGCCCCCCCGTCGCGAGCGGAATCTGC
GTCGAGCGTAGGATGGTTCACTTCACGGACGTCCCCCGCATCCCCCTCGG
AGCCAGGCCGGCGATGGGTTCCCGTCGCGAGGACGCGGCCGGGGGCCCCG
GCGATTGGCCTCCCCCCCTCCCCCCTCCGCCCGTGTGCTTTTCCCCCTCC
GGGAGGTACTTGTTCAGCGGAGGGCACGAGTCCGGGGCGTTGCTCATGTG
GCAGTTCGATTACAACACTGGCCAGGTTTGTTGGCTTGGGTTTTCGCGGC
GAAGGATTAGGTTGGACGCCTCGGGTGGTTGTGTTGAGCGTAGCCTCGAG
TCGCGGGCGGAGCGTTCTGGGTCTTCTCGTGTTCTTTTCCGTGTTCAGGT
GTAGGCCCGTTGGTGGTGTTGGTGATACGTGCTGCTGTTGGTTTTGCTTC
ATATGTATCCCAAGAAAACGCTTTTTAGTTTTCCTTCTGATATATACGTA
TGGCCGCTTCGTTCGGTCGCTCGAGGCTGCGATGGGAAGACCTAACCATG
AGGAGGAGGCGTGTGGGCCATGCGCACTAGCACGTCATGTCACGTGACCG
GCGGTGTGCAGGTGGTCGCCAGTCGCCCCCAGGGGTATGGTCGACTTACA
TCGTGAATGTTCTGTGTTTTGTTGGCAAAGAGAGGAAAGGTTGTTGCGGA
TGCACATGCTTCTGACCCTCTGTCTCTGACGATAGCCCCCCCCTCGAAAA
AAAAAATACCAGAAAGCCACAAGGCGGGACCACCCTTTTCCCGAACAGGA
CCATGGACCTTGCGCTCTCTCCTCCTCCCCCCTCTCCACCGCCAGTGCCG
ATTTTTAGAAAGCACATATGCTGACTAGAGACCGGAAATGATGTGTAACG
TGGAGACAACAAAAGCCGATGCGCTAACCCCCCCCCCCACCACCACCTCG
ACCAGGTGTGCGGCGAGATGGCGCTGCACGGGCACTCGGCCCCCGTGACC
TGCCTCGCGCTTTGCGGGCTCGAGGCCAAGGACAGCGACCTCGTCCTCTC
CGGCGCCGCCGACGGTACGGCCCTTCTCTGGTCCGTCCGCCGCCTGGCCC
CTAACTACATCTCGGACAGTCTGCGCCGCCCAACGGCCCGCCGGTGTCCC
GCCCTCGTCGTGCGCGGGCACGGGGGGCCCGTGACCGCGTGCGCGGTTAG
TGACGGCCTCGGCCTGGCGCTCACGTGCTCCGACGGCCGCGCCCTGCTGA
CCGCCATCGAGGGGAACGTGCTGTTGCGCGCCCTGGGGCAACAGCCTGCC
AGGTCCTCTGTAGGAGGAGGAGGAAGAGGAGGCGTTTTGACTACCGCTGC
CGCTGTTGGTGGCGGCGGCGAGGCCGCAACCGGCGGCGGCGGCGGTAGGG
AGTCGAGTGCCGCGATGCCGCAGCAGCAGCAGCAGCAGCAGCAGCTCCCG
GCCGCTCGATTCACGGCCTGCGCGCTGGGAGAGACCGGGTACTGCGCGTT
GGCGAGTTCCCGGCTTGCGGCTGGCGACGAGCCTGGCGCAGCGGCGGCAG
TGCTGCGGCCCGTGCACGAGCTAGAGGTATACACGGTGAACGGGCTGCTC
ACGGCGCGGGTGTCCGGCCTGTCCGGCGCCGTGCGGTGCCTCTCCACGGC
CGGCCGCGGCGAGCTTCTCGTCGTTGGCGGGGACGGGCTCATGCTGGAGG
TCCGCACCATGGCCAGCCTCGCACCCGTCTGGAGCCTCGACCCCGGGAGC
TGGGTTACCATCGACTGCTTCTCGGGCGCGGGCGGCGGTGGCCGGGTGCC
GAGGGGGGCCGCTGGAGGGGCGAGGGCAGGAACCACGCCGGACGTGCCGC
CTTCGGTGGAGTGTGTCGAGCTAGGACCTAACCCGAACGCTCCCGTGCTG
GTGTGCGTCGGAACCTCCGACGGTTCGCTGCTAGTCCAGGTGGGGAAGGG
TGCGAGCGTCGTCGTTGCTTTGGGGGGGGGGGGGGGTTCTCGTGAACGAT
GGTCTTGTTTTGGCGGTCATTCATGTGGGAGGTGTGTCGCTCACCACCGT
GGGGGCAGAGTCTCACCGCCACCTACGTTTGTTCGAACCACACCATAATA
CCGGACACGATCACCGACTGAAACGCGTCGTTTGCGAGCAGGCTCTTCCC
GACGCGGAGGAATGGCTCCGGAACAACCTTTTCGTAGCGGTGGGGTCTAT
GATCATTTCGGCCCCGGGCAAGGTGCTGAAGGGGACGGTCAACACCGTGC
ACTCCATCGCCACCAAGTCCATCAGAGGCGCCGGCGGCCTGGTCAACACC
ACGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14656:733..3138-

>mRNA_Ecto-sp13_S_contig14656.3565.1 ID=mRNA_Ecto-sp13_S_contig14656.3565.1|Name=mRNA_Ecto-sp13_S_contig14656.3565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1524bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14656:733..3138- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGCCAGCGACACTGACCAGCAGCAACAGCTTAGCAGCGGCTCCGG
TACGGGCGGCGGTGGCGGCAGCAGCAGCAACAGCTCTCCCCGGCAGCGGA
GACGTCGCCGGACGCAGAATAATCGCCCCCCCGTCGCGAGCGGAATCTGC
GTCGAGCGTAGGATGGTTCACTTCACGGACGTCCCCCGCATCCCCCTCGG
AGCCAGGCCGGCGATGGGTTCCCGTCGCGAGGACGCGGCCGGGGGCCCCG
GCGATTGGCCTCCCCCCCTCCCCCCTCCGCCCGTGTGCTTTTCCCCCTCC
GGGAGGTACTTGTTCAGCGGAGGGCACGAGTCCGGGGCGTTGCTCATGTG
GCAGTTCGATTACAACACTGGCCAGGTGTGCGGCGAGATGGCGCTGCACG
GGCACTCGGCCCCCGTGACCTGCCTCGCGCTTTGCGGGCTCGAGGCCAAG
GACAGCGACCTCGTCCTCTCCGGCGCCGCCGACGGTACGGCCCTTCTCTG
GTCCGTCCGCCGCCTGGCCCCTAACTACATCTCGGACAGTCTGCGCCGCC
CAACGGCCCGCCGGTGTCCCGCCCTCGTCGTGCGCGGGCACGGGGGGCCC
GTGACCGCGTGCGCGGTTAGTGACGGCCTCGGCCTGGCGCTCACGTGCTC
CGACGGCCGCGCCCTGCTGACCGCCATCGAGGGGAACGTGCTGTTGCGCG
CCCTGGGGCAACAGCCTGCCAGGTCCTCTGTAGGAGGAGGAGGAAGAGGA
GGCGTTTTGACTACCGCTGCCGCTGTTGGTGGCGGCGGCGAGGCCGCAAC
CGGCGGCGGCGGCGGTAGGGAGTCGAGTGCCGCGATGCCGCAGCAGCAGC
AGCAGCAGCAGCAGCTCCCGGCCGCTCGATTCACGGCCTGCGCGCTGGGA
GAGACCGGGTACTGCGCGTTGGCGAGTTCCCGGCTTGCGGCTGGCGACGA
GCCTGGCGCAGCGGCGGCAGTGCTGCGGCCCGTGCACGAGCTAGAGGTAT
ACACGGTGAACGGGCTGCTCACGGCGCGGGTGTCCGGCCTGTCCGGCGCC
GTGCGGTGCCTCTCCACGGCCGGCCGCGGCGAGCTTCTCGTCGTTGGCGG
GGACGGGCTCATGCTGGAGGTCCGCACCATGGCCAGCCTCGCACCCGTCT
GGAGCCTCGACCCCGGGAGCTGGGTTACCATCGACTGCTTCTCGGGCGCG
GGCGGCGGTGGCCGGGTGCCGAGGGGGGCCGCTGGAGGGGCGAGGGCAGG
AACCACGCCGGACGTGCCGCCTTCGGTGGAGTGTGTCGAGCTAGGACCTA
ACCCGAACGCTCCCGTGCTGGTGTGCGTCGGAACCTCCGACGGTTCGCTG
CTAGTCCAGGCTCTTCCCGACGCGGAGGAATGGCTCCGGAACAACCTTTT
CGTAGCGGTGGGGTCTATGATCATTTCGGCCCCGGGCAAGGTGCTGAAGG
GGACGGTCAACACCGTGCACTCCATCGCCACCAAGTCCATCAGAGGCGCC
GGCGGCCTGGTCAACACCACGGGG
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