mRNA_Ecto-sp13_S_contig14621.3550.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14621.3550.1
Unique NamemRNA_Ecto-sp13_S_contig14621.3550.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14621.3550.1 vs. uniprot
Match: D7FZT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZT4_ECTSI)

HSP 1 Score: 319 bits (818), Expect = 1.600e-100
Identity = 318/503 (63.22%), Postives = 321/503 (63.82%), Query Frame = 1 
Query:    1 MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSVTVQEVFGPITVDRVAVRPDASPAQEKVVAQGIPCTFPLDATVESFDLVLMAENDNGAGATKSAAVDQASASKEDSSQLAEAAAVAVAGDGHETDEVVISAEDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EQGNDAEEEFHDASGAAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXKEATDEASPVASGTTGDESNANVVDAAADPASXXXXXXXXXXXXXVXXXXVETPAAEGDVAAAAEVDVTPVEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGPVAGDDPETAPAATVAEXXXXXXXXADTGAARASLNGGVGGASPAAAEALGCSTGTTEVVVPSSELDFKLSQGQWRYLEADSTPVHGDGAVEVTKGIRFSTSLKAVDSREDDDRIVELSEKLSDAERRVRAAGAMVSNPTPS 1506
            MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSV                           VAQGIPCTFPLDA VESFDLVLMAEND+GAGATKSAAVDQAS S+EDSSQLAEAAAVAV GDGHETDEVVISAEDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EQGNDAEEEFHD SGAAAP                                                           V DAA                        E P A    A  AE               XXXXXXXXXXXXXXXXXXXXXXX A GPVAG             XXXXXXXX                     A ALGCSTGTTEVVVPSSELDFKLSQGQWRYLEADSTPVHGDGAVEVTKGIRFSTSLKAVDSREDDDRIVELSEKLSDAERRVRAA AM+    PS
Sbjct:    1 MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSV---------------------------VAQGIPCTFPLDAAVESFDLVLMAENDSGAGATKSAAVDQASVSQEDSSQLAEAAAVAVPGDGHETDEVVISAEDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSEQGNDAEEEFHDDSGAAAP-----------------------------------------------------------VADAA------------------------EAPVAGETEAVGAEA---------GQGETXXXXXXXXXXXXXXXXXXXXXXXXAVGPVAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAALGCSTGTTEVVVPSSELDFKLSQGQWRYLEADSTPVHGDGAVEVTKGIRFSTSLKAVDSREDDDRIVELSEKLSDAERRVRAAEAMIKKLQPS 384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14621.3550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZT4_ECTSI1.600e-10063.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14621contigEcto-sp13_S_contig14621:949..4287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1506
Hectar predicted targeting categoryother localisation
Exons4
Cds size1506
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.1710584-CDS-Ecto-sp13_S_contig14621:948..10891681462781.1710584-CDS-Ecto-sp13_S_contig14621:948..1089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14621 949..1089 +
1681462781.1819553-CDS-Ecto-sp13_S_contig14621:1774..18551681462781.1819553-CDS-Ecto-sp13_S_contig14621:1774..1855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14621 1775..1855 +
1681462781.1903667-CDS-Ecto-sp13_S_contig14621:2395..35891681462781.1903667-CDS-Ecto-sp13_S_contig14621:2395..3589Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14621 2396..3589 +
1681462781.1981814-CDS-Ecto-sp13_S_contig14621:4197..42871681462781.1981814-CDS-Ecto-sp13_S_contig14621:4197..4287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14621 4198..4287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14621.3550.1prot_Ecto-sp13_S_contig14621.3550.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14621 949..4287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14621.3550.1

>prot_Ecto-sp13_S_contig14621.3550.1 ID=prot_Ecto-sp13_S_contig14621.3550.1|Name=mRNA_Ecto-sp13_S_contig14621.3550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=502bp
MSQSRVNLATAKRELAERRDEANLCMVELKHAQEVLAAGGTGPKVLSVTV
QEVFGPITVDRVAVRPDASPAQEKVVAQGIPCTFPLDATVESFDLVLMAE
NDNGAGATKSAAVDQASASKEDSSQLAEAAAVAVAGDGHETDEVVISAED
AAEAVEAEAAAAATATVPDAAEAGEAGVNEVAAAAAATTAAAAGAVSEQG
NDAEEEFHDASGAAAPVADAAEAPVAEETEAVGAEAGQGETAESEPAGEV
GEAKEATDEASPVASGTTGDESNANVVDAAADPASAAAAAAAAAAEEEVA
AAAVETPAAEGDVAAAAEVDVTPVEDGDGDSAAAGLSLDTAAAEAEAAAA
AAEAAVAAAGPVAGDDPETAPAATVAEAAGEVAGEADTGAARASLNGGVG
GASPAAAEALGCSTGTTEVVVPSSELDFKLSQGQWRYLEADSTPVHGDGA
VEVTKGIRFSTSLKAVDSREDDDRIVELSEKLSDAERRVRAAGAMVSNPT
PS
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mRNA from alignment at Ecto-sp13_S_contig14621:949..4287+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14621.3550.1 ID=mRNA_Ecto-sp13_S_contig14621.3550.1|Name=mRNA_Ecto-sp13_S_contig14621.3550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14621:949..4287+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCAGTCCCGCGTGAATCTGGCGACGGCCAAGCGGGAGCTGGCGGA
GCGCCGAGACGAGGCCAACCTGTGTATGGTGGAGCTGAAGCACGCGCAGG
AGGTGCTGGCCGCTGGGGGCACAGGGCCCAAGGTTCTGTCGGTGAGAGGA
CGAGAGAGAGACAGAGAGCACTGCGAATTGAGTGTGATTATTTTTTACCG
AATCCTTGATCGGCTGCTTGGTAAGTCGTTGCATTGCGCGCCTAGTTTAC
GGTACGGCCTCAATCAAAGCTTGCGGTCAATAAAACTCGTTTCTCCCTCC
CGAACTCCGCGCTGTGCGTACGGTCGTGTTCGTCCACACGCCGGGGAGGC
AAGACACTTATGGACGTCTCCAACACATATCTTGTGTTGTTGTGCTGCCA
GGACACGCCCGGTTGCAGCCGCCGCTTTGCCCGTCAATCTTGCCCTGCAA
CGCGCTTGATCGCTCCCGAACACGCCTTGGAAATCGCATCTACACCAGCC
GTCCGTGAGAGCTCCCACGGCCTCCGGTACAGCAGTGAAGTACATGCGTA
CGATCACGAACACCACGTTCATCGTCGAAATATGCCACACCTACATAAAC
ATGTATGCACAAGTCGTAAGTCGCCCGTGCTAGTTCACTACTCTTGCGCA
GCACACATACGGGATGACTTTCAAACTCGAACGTGTTCCGTGAGTGCCCT
TTCGTGTTTCTGGCTTTTTTTTTTACTTTTTTTCTCACACCGATGAATTC
CTCGAATCCCTGATCCGCCGCGTTTCTTGTCCGACGCTCTGGCACTCGGC
TTCCGTGTGGGGGAAACGACAATAAGGTTACGGTGCAAGAGGTATTCGGC
CCGATCACGGTGGACAGGGTAGCAGTTCGTCCAGACGCTTCACCAGCGCA
GGAAAAGGTATGGGAGATACTTAAGTAACACGGCAATTGGCTGGCTGGTA
AGCGGGGTCTCAAGTCGGGGAGCACCACTGGCGGAGTTTTGAAAAGACCT
GCTCGACTTGTTTCACCCAGCGTTTCTCGGGGGGATTGGTGGTACAGGGA
TTGGATTGGATTAGACTGCAGGATGCTTGAATGGGAGTTGGCAGGCTTGC
TTGCACAACAACACGAGCAAACCGTATGAATGTATTATCAGGGTAAGATA
AACGTTGTTGCACATGGAGAGGGTACCTCCACGCACCCGCCTTCATTTGT
TGGTTTTGCTTTTTGCGACGGTGCACGTTCTCAAAGGAAGATGTCATGTG
CTCGATTGGACTCGGCAAATATTTGGGGTCACTGCTGTTCTCCATTGTGG
TTTTGTCAACTGGTTGGTGTACCAGTGGACCTCTGGTTCTTCCTTCCTGA
CATGCGTGTTTTGTATCGACTTCCTCTTGCTCTCTTTTCTGCACCCCCCT
TCCCCTCAACGCCGTCGCCTCCACTCCGCCGCCTCCCTTTCGGGCAGGTC
GTGGCGCAAGGAATACCGTGCACGTTTCCCCTCGATGCCACAGTAGAAAG
CTTTGACCTGGTTCTCATGGCGGAGAACGACAACGGCGCCGGAGCGACGA
AATCGGCCGCCGTTGACCAGGCGTCAGCATCAAAAGAGGACTCGTCTCAA
TTAGCGGAGGCAGCGGCGGTGGCGGTAGCGGGGGATGGCCACGAAACCGA
CGAAGTGGTAATCAGCGCGGAGGACGCGGCCGAAGCCGTCGAGGCAGAAG
CGGCGGCGGCAGCAACGGCGACTGTACCAGACGCCGCTGAAGCCGGCGAA
GCCGGGGTAAACGAGGTGGCCGCCGCCGCCGCCGCCACCACCGCCGCCGC
AGCTGGCGCTGTTTCTGAGCAGGGGAACGATGCCGAAGAGGAGTTCCACG
ATGCCTCGGGGGCGGCCGCTCCCGTTGCAGACGCTGCTGAGGCACCAGTC
GCGGAGGAAACGGAGGCGGTGGGAGCGGAGGCCGGCCAGGGAGAAACCGC
TGAGTCCGAACCAGCGGGTGAGGTGGGCGAGGCAAAGGAAGCAACGGATG
AGGCCTCTCCGGTGGCGTCGGGGACAACCGGCGACGAGAGCAACGCTAAC
GTCGTTGACGCCGCCGCCGACCCAGCGAGTGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGAGGAGGAGGTGGCGGCGGCGGCGGTAGAGACACCGGCGG
CCGAAGGCGATGTAGCCGCTGCTGCAGAGGTGGATGTGACCCCTGTGGAA
GACGGCGACGGGGACTCCGCCGCGGCGGGACTTTCGCTTGATACCGCAGC
GGCAGAGGCAGAAGCGGCGGCGGCAGCGGCAGAGGCGGCGGTGGCGGCGG
CGGGGCCCGTTGCTGGAGATGACCCGGAAACCGCTCCGGCGGCGACGGTT
GCCGAAGCCGCGGGCGAAGTCGCGGGTGAAGCAGACACCGGTGCTGCGAG
GGCGAGCCTTAACGGGGGCGTAGGGGGCGCCTCGCCCGCGGCGGCGGAGG
CCCTGGGGTGCAGCACCGGTACGACGGAGGTGGTGGTGCCCTCCTCCGAG
CTGGACTTCAAGCTCAGCCAGGGGCAGTGGCGGTACCTGGAGGCGGACTC
GACACCCGTGCACGGCGACGGCGCCGTCGAGGTCACCAAGGGAATCAGGT
TCTCGACGTCCCTCAAGGCCGTGGACAGCCGGGAAGATGACGTGCGTGCC
TCTCTCTACCGTGTGTGTGTTTTTGTTGTTGGCATCGACCGAGCTAACCG
GCTGACCAATGAAAACGACGCCAATCTCAGTGCGGTTGAAAACAGGAAAT
GCTTTTGGAGGCCATGATCTGGGACCCCTTGAGGGGGCGTCATGAGGGAG
GCCATGCTTCCCTCTGGTGTTAAAGGCAGAGACAGTGAAGCAGCAAAGAA
AAATTGCCTGCGTGTGTGTGTGTGCTCATCATGTGTGCTGTTGTTGATGC
CGTATGCAGAGCTGTGTTTCTCGTCTGCCACGTTCGTTGGTGAGGAGAGC
GTCAGCCTTCGGCGGGGCTAGAACGAGAGAAAAAGAAACGCGGTGCATAT
TCTTTTTATCTGTGTAGCATGTGTGCGTGTACGCGCTCGTGGCAAAACGG
GGTGGTTTTCCGGGTAGGGATTCTGGCGAAGTATTTTTTTTTGTGCTGCG
GTGAAATGGAAACTATTCTTCGATAAAAGCAAATTGTGCGACCGAACGAG
CTTACCAGCATCTGCTTGCTGTGGTGTTGTTCATTTACCCACCGTCCCAC
CCCACCCCCTACTCCCCTGCTTGGGACTGCCTTCTCTTCTCTTCCACAGG
ACCGCATCGTGGAGCTGTCGGAGAAGCTGAGCGATGCAGAGCGGCGCGTT
CGGGCTGCTGGGGCTATGGTGAGCAACCCGACTCCTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14621:949..4287+

>mRNA_Ecto-sp13_S_contig14621.3550.1 ID=mRNA_Ecto-sp13_S_contig14621.3550.1|Name=mRNA_Ecto-sp13_S_contig14621.3550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1506bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14621:949..4287+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCAGTCCCGCGTGAATCTGGCGACGGCCAAGCGGGAGCTGGCGGA
GCGCCGAGACGAGGCCAACCTGTGTATGGTGGAGCTGAAGCACGCGCAGG
AGGTGCTGGCCGCTGGGGGCACAGGGCCCAAGGTTCTGTCGGTTACGGTG
CAAGAGGTATTCGGCCCGATCACGGTGGACAGGGTAGCAGTTCGTCCAGA
CGCTTCACCAGCGCAGGAAAAGGTCGTGGCGCAAGGAATACCGTGCACGT
TTCCCCTCGATGCCACAGTAGAAAGCTTTGACCTGGTTCTCATGGCGGAG
AACGACAACGGCGCCGGAGCGACGAAATCGGCCGCCGTTGACCAGGCGTC
AGCATCAAAAGAGGACTCGTCTCAATTAGCGGAGGCAGCGGCGGTGGCGG
TAGCGGGGGATGGCCACGAAACCGACGAAGTGGTAATCAGCGCGGAGGAC
GCGGCCGAAGCCGTCGAGGCAGAAGCGGCGGCGGCAGCAACGGCGACTGT
ACCAGACGCCGCTGAAGCCGGCGAAGCCGGGGTAAACGAGGTGGCCGCCG
CCGCCGCCGCCACCACCGCCGCCGCAGCTGGCGCTGTTTCTGAGCAGGGG
AACGATGCCGAAGAGGAGTTCCACGATGCCTCGGGGGCGGCCGCTCCCGT
TGCAGACGCTGCTGAGGCACCAGTCGCGGAGGAAACGGAGGCGGTGGGAG
CGGAGGCCGGCCAGGGAGAAACCGCTGAGTCCGAACCAGCGGGTGAGGTG
GGCGAGGCAAAGGAAGCAACGGATGAGGCCTCTCCGGTGGCGTCGGGGAC
AACCGGCGACGAGAGCAACGCTAACGTCGTTGACGCCGCCGCCGACCCAG
CGAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGGAGGAGGTGGCG
GCGGCGGCGGTAGAGACACCGGCGGCCGAAGGCGATGTAGCCGCTGCTGC
AGAGGTGGATGTGACCCCTGTGGAAGACGGCGACGGGGACTCCGCCGCGG
CGGGACTTTCGCTTGATACCGCAGCGGCAGAGGCAGAAGCGGCGGCGGCA
GCGGCAGAGGCGGCGGTGGCGGCGGCGGGGCCCGTTGCTGGAGATGACCC
GGAAACCGCTCCGGCGGCGACGGTTGCCGAAGCCGCGGGCGAAGTCGCGG
GTGAAGCAGACACCGGTGCTGCGAGGGCGAGCCTTAACGGGGGCGTAGGG
GGCGCCTCGCCCGCGGCGGCGGAGGCCCTGGGGTGCAGCACCGGTACGAC
GGAGGTGGTGGTGCCCTCCTCCGAGCTGGACTTCAAGCTCAGCCAGGGGC
AGTGGCGGTACCTGGAGGCGGACTCGACACCCGTGCACGGCGACGGCGCC
GTCGAGGTCACCAAGGGAATCAGGTTCTCGACGTCCCTCAAGGCCGTGGA
CAGCCGGGAAGATGACGACCGCATCGTGGAGCTGTCGGAGAAGCTGAGCG
ATGCAGAGCGGCGCGTTCGGGCTGCTGGGGCTATGGTGAGCAACCCGACT
CCTTCC
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