mRNA_Ecto-sp13_S_contig14619.3548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14619.3548.1
Unique NamemRNA_Ecto-sp13_S_contig14619.3548.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.320e-17
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 3 
Query:  240 VFVAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRA-PTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMIISATV 608
            V + + ++ A T ++ + L ++  MW +R NFFI +RSPLLAC  G C+ +R       + + WG       DG+  L+  P +L +E   +M A R+++M++P  R  WGR  +ER ++   V
Sbjct:    8 VAIDIFILAAATVYSFVCLGFVAAMWSLRRNFFIVLRSPLLACTLGLCITLRFEVLIFAHTLHWGHSGLVASDGVTSLIEFPALLISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLV 131
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BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 3.050e-16
Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 3 
Query:  246 VAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRA-PTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMIISATV 608
            + + ++ A T ++ + L +I  MW +R NFFI +RSPLLAC  G C+ +R       + + WG        G+ +++  P++L +E   +M A R+++M++P  R  WGR  +E+ ++   V
Sbjct:   10 IDIFILAAATVYSFVCLGFIAAMWSLRRNFFIVLRSPLLACTLGLCITLRFEFLLFAHTLHWGHSGLVASHGVTNMIEFPVLLISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLV 131
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BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.870e-16
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 3 
Query:  231 VGRVFVAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVA-WGGRAPTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKER----------MIISATVW 611
            + R+ +  L++V  +A+ ++SL Y+  MW +R NFFI +RSP+LAC         G   T+ Y+V  +G     +  I++L+G P +L AE   I+ A R+ +MYYP  R  +GR+ +E+          +++   VW
Sbjct:    3 IARLVIDALILVFSSAYALISLGYVATMWHLRKNFFIVLRSPILAC-------TSGLGITVRYIVTIYGLVLGRNLEILNLIGFPALLIAEIAVILTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVEMVVW 133
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BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.470e-14
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 3 
Query:  255 LVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRAPTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKER----------MIISATVW 611
            +++V  +A+ ++SL YI  MW +R NFFI +RSP+LAC  G  + +R ++ T+  +V   GR   +  I++LVG P +  AE   ++ A R+ +MYYP  R  +GR+ +E+          +++   VW
Sbjct:   11 VILVFASAYALISLGYIATMWHLRKNFFIVLRSPILACTSGLGITVR-YTVTMYGLVV--GR---NLEILNLVGFPALWIAEIALVLTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVETVVW 133
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BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-6
Identity = 39/124 (31.45%), Postives = 67/124 (54.03%), Query Frame = 3 
Query:  237 RVFVAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFC-LCIRG---WSATLEYVVAWGGRAPTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMII 596
            ++F+ V+++     F+++SLSY   M ++R  FFIA+RSP+LA   G   + I G      TL Y ++ G           ++ +P++L   A  I+R  R+++M+ P  R+ WG   +ER  I
Sbjct:   70 QLFIDVVILSYTVVFSLVSLSYCAAMGQLRKEFFIALRSPMLAVMSGAIGILISGPEIIGMTLTYDMSAGPE--------KILCVPLMLSFTATYILRGVRLLIMFTPRSRQRWGSFLRERNFI 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KX00_9PHAE1.320e-1733.06RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI3.050e-1631.15Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5JIZ3_9PHAE5.870e-1632.61RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P6_ECTSI6.470e-1434.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI1.330e-631.45RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14619contigEcto-sp13_S_contig14619:1865..3246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score85.1
Seed ortholog evalue2.8e-14
Seed eggNOG ortholog2880.D8LTR6
Model size611
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.Regulator of G protein signaling domain
EggNOG OGs2D0MX@1,2SERP@2759
Cds size423
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.0665689-UTR-Ecto-sp13_S_contig14619:1864..20521681462781.0665689-UTR-Ecto-sp13_S_contig14619:1864..2052Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14619 1865..2052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462781.0768569-CDS-Ecto-sp13_S_contig14619:2052..22131681462781.0768569-CDS-Ecto-sp13_S_contig14619:2052..2213Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14619 2053..2213 +
1681462781.0859222-CDS-Ecto-sp13_S_contig14619:2683..27901681462781.0859222-CDS-Ecto-sp13_S_contig14619:2683..2790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14619 2684..2790 +
1681462781.095786-CDS-Ecto-sp13_S_contig14619:3091..32461681462781.095786-CDS-Ecto-sp13_S_contig14619:3091..3246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14619 3092..3246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14619.3548.1prot_Ecto-sp13_S_contig14619.3548.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14619 2053..3246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14619.3548.1

>prot_Ecto-sp13_S_contig14619.3548.1 ID=prot_Ecto-sp13_S_contig14619.3548.1|Name=mRNA_Ecto-sp13_S_contig14619.3548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MPGPDGNEEWSGEYVGRVFVAVLVMVAITAFTILSLSYIFVMWRIRHNFF
IAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRAPTDDGIVDLVGLPMV
LCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMIISATVW
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mRNA from alignment at Ecto-sp13_S_contig14619:1865..3246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14619.3548.1 ID=mRNA_Ecto-sp13_S_contig14619.3548.1|Name=mRNA_Ecto-sp13_S_contig14619.3548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14619:1865..3246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATAACACCAGGATAAAGGCGGTCGATGCCCTATGCTCTCTGTGGTGTTCA
AGCTCGCACGCGCTTTGTGTTCCGTCCAATAAGGGCGAAAGGGACAGGAA
AATGCCGGTCAATGACGCGCCGCAAAAACCATTATGAGAGCTCCTGATCG
TCTTGGTGGTCCTCGAACTTCTTCTGACTTGGTCGGCTATGCCGGGTCCC
GACGGGAACGAGGAATGGAGCGGGGAATACGTTGGCCGGGTGTTCGTGGC
TGTCCTGGTGATGGTTGCCATCACAGCCTTCACCATCCTGAGCTTGTCCT
ACATTTTCGTGATGTGGCGCATCAGACACAACTTCTTCATCGCGATGAGG
TACAGGAAGTTACAGCAGCAGTGTCACCGTTTGGGGGCGACAGCANNNNN
NNNNTACATGCTGTAGAGAGCAGATGTAGATGAAAAACTTCAAGCAGTAC
CTAGCCGTCGTCTCCACCTCTAGGTTGAAACATTGGAAATGTTTTCTGCG
CGGTACGTGACATTGTGTCTAGAAATACGGAAGGACGTTGCGTGCCTATC
GTGTTATGCCGCAGAATACAAGCGATTTTCGCCATCGTCTACGCCCCTTT
GCTCCAGAACCACATGAGTCACAACGACATACATTAGAATACCGAGGTGC
AAATCATGCCATATTTACTACAATAATGCCTTGATCGGTGAACTAGGTTT
CTGACTATATGTTTGATTCGGTTGGGCATCGCGTGCGTTGGTAGATGACA
AAGTCGTTCTTCACAAGGCCAAATGAAAATATTGTCGATGAAGATGCTTT
TCTGCCGCGCGAAAAACAGGTCACCACTACTAGCGTGCGGGTGCGGGTTC
TGCCTCTGCATTCGCGGGTGGTCGGCCACTCTTGAGTACGTCGTTGCATG
GGGTGGACGAGCTCCCACGGACGACGGTAAGACAAGCGGATCCGAACATC
TTGCTTGCTGAATACTCGAGAACCCCAGCCACAACGTAGCATCTGCATGA
CCGAGAGATGTGATCCTCAATGGAAGTATGGCTACAATGCTATCTTATCA
ATGTTGGGGTTGCGGGAAGCATCGTTTCTATTGTGCGTGGTGCCATCGCT
CAACACATGTCCAGTATCCGAGACTCCGAATGGCCGTACGCCGCCGTAAA
TTCCCAATCTCAAAGACGGCGGCAATCGAACTTTTTCCCACTCGAAATTC
CCAAAATACGTCCCGTGATTCTTGTAGGGATCGTCGACCTGGTTGGCCTG
CCTATGGTGTTGTGCGCCGAAGCACTAGCAATCATGCGTGCTTTCCGCGT
CGTGCTCATGTACTACCCCCACCGGCGGAAAGCTTGGGGGCGCATCCCGA
AGGAAAGGATGATTATCAGCGCCACCGTCTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14619:1865..3246+

>mRNA_Ecto-sp13_S_contig14619.3548.1 ID=mRNA_Ecto-sp13_S_contig14619.3548.1|Name=mRNA_Ecto-sp13_S_contig14619.3548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14619:1865..3246+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGGTCCCGACGGGAACGAGGAATGGAGCGGGGAATACGTTGGCCG
GGTGTTCGTGGCTGTCCTGGTGATGGTTGCCATCACAGCCTTCACCATCC
TGAGCTTGTCCTACATTTTCGTGATGTGGCGCATCAGACACAACTTCTTC
ATCGCGATGAGGTCACCACTACTAGCGTGCGGGTGCGGGTTCTGCCTCTG
CATTCGCGGGTGGTCGGCCACTCTTGAGTACGTCGTTGCATGGGGTGGAC
GAGCTCCCACGGACGACGGGATCGTCGACCTGGTTGGCCTGCCTATGGTG
TTGTGCGCCGAAGCACTAGCAATCATGCGTGCTTTCCGCGTCGTGCTCAT
GTACTACCCCCACCGGCGGAAAGCTTGGGGGCGCATCCCGAAGGAAAGGA
TGATTATCAGCGCCACCGTCTGG
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