prot_Ecto-sp13_S_contig14619.3548.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14619.3548.1
Unique Nameprot_Ecto-sp13_S_contig14619.3548.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length141
Homology
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: A0A6H5KX00_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX00_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.010e-18
Identity = 41/124 (33.06%), Postives = 69/124 (55.65%), Query Frame = 0
Query:   18 VFVAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRA-PTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMIISATV 140
            V + + ++ A T ++ + L ++  MW +R NFFI +RSPLLAC  G C+ +R       + + WG       DG+  L+  P +L +E   +M A R+++M++P  R  WGR  +ER ++   V
Sbjct:    8 VAIDIFILAAATVYSFVCLGFVAAMWSLRRNFFIVLRSPLLACTLGLCITLRFEVLIFAHTLHWGHSGLVASDGVTSLIEFPALLISEFALVMSAVRLLVMFFPKLRAKWGRFTRERDLVYGLV 131          
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: D8LTR6_ECTSI (Developmental regulator FlbA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTR6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 4.800e-17
Identity = 38/122 (31.15%), Postives = 69/122 (56.56%), Query Frame = 0
Query:   20 VAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRA-PTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMIISATV 140
            + + ++ A T ++ + L +I  MW +R NFFI +RSPLLAC  G C+ +R       + + WG        G+ +++  P++L +E   +M A R+++M++P  R  WGR  +E+ ++   V
Sbjct:   10 IDIFILAAATVYSFVCLGFIAAMWSLRRNFFIVLRSPLLACTLGLCITLRFEFLLFAHTLHWGHSGLVASHGVTNMIEFPVLLISEFALVMSAVRLLVMFFPKLRAKWGRFTREKDLVYGLV 131          
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: A0A6H5JIZ3_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIZ3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 9.290e-17
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 0
Query:   15 VGRVFVAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVA-WGGRAPTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKER----------MIISATVW 141
            + R+ +  L++V  +A+ ++SL Y+  MW +R NFFI +RSP+LAC         G   T+ Y+V  +G     +  I++L+G P +L AE   I+ A R+ +MYYP  R  +GR+ +E+          +++   VW
Sbjct:    3 IARLVIDALILVFSSAYALISLGYVATMWHLRKNFFIVLRSPILAC-------TSGLGITVRYIVTIYGLVLGRNLEILNLIGFPALLIAEIAVILTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVEMVVW 133          
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: D7G0P6_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P6_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.110e-14
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 0
Query:   23 LVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRAPTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKER----------MIISATVW 141
            +++V  +A+ ++SL YI  MW +R NFFI +RSP+LAC  G  + +R ++ T+  +V   GR   +  I++LVG P +  AE   ++ A R+ +MYYP  R  +GR+ +E+          +++   VW
Sbjct:   11 VILVFASAYALISLGYIATMWHLRKNFFIVLRSPILACTSGLGITVR-YTVTMYGLVV--GR---NLEILNLVGFPALWIAEIALVLTALRLFVMYYPSTRAKYGRVTREKPWACGLAATYLLVETVVW 133          
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Match: D7FYZ5_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ5_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 2.860e-7
Identity = 39/124 (31.45%), Postives = 67/124 (54.03%), Query Frame = 0
Query:   17 RVFVAVLVMVAITAFTILSLSYIFVMWRIRHNFFIAMRSPLLACGCGFC-LCIRG---WSATLEYVVAWGGRAPTDDGIVDLVGLPMVLCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMII 136
            ++F+ V+++     F+++SLSY   M ++R  FFIA+RSP+LA   G   + I G      TL Y ++ G           ++ +P++L   A  I+R  R+++M+ P  R+ WG   +ER  I
Sbjct:   70 QLFIDVVILSYTVVFSLVSLSYCAAMGQLRKEFFIALRSPMLAVMSGAIGILISGPEIIGMTLTYDMSAGPE--------KILCVPLMLSFTATYILRGVRLLIMFTPRSRQRWGSFLRERNFI 185          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14619.3548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KX00_9PHAE2.010e-1833.06RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LTR6_ECTSI4.800e-1731.15Developmental regulator FlbA n=1 Tax=Ectocarpus si... [more]
A0A6H5JIZ3_9PHAE9.290e-1732.61RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0P6_ECTSI1.110e-1434.11RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FYZ5_ECTSI2.860e-731.45RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..119
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 75..93
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 55..74
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..54
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 120..141
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 94..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14619contigEcto-sp13_S_contig14619:2053..3246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14619.3548.1mRNA_Ecto-sp13_S_contig14619.3548.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14619 1865..3246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14619.3548.1 ID=prot_Ecto-sp13_S_contig14619.3548.1|Name=mRNA_Ecto-sp13_S_contig14619.3548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MPGPDGNEEWSGEYVGRVFVAVLVMVAITAFTILSLSYIFVMWRIRHNFF
IAMRSPLLACGCGFCLCIRGWSATLEYVVAWGGRAPTDDGIVDLVGLPMV
LCAEALAIMRAFRVVLMYYPHRRKAWGRIPKERMIISATVW
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