mRNA_Ecto-sp13_S_contig14613.3543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14613.3543.1
Unique NamemRNA_Ecto-sp13_S_contig14613.3543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.010e-85
Identity = 126/141 (89.36%), Postives = 132/141 (93.62%), Query Frame = 1
Query:    1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
            GVLGALWIAP+VHYWFD LEA FKDKKAVPGA APSFS R+ KALKMV+LDQ IGAPLVNAGFMFLFTFATAL SGTGGIESGKKA  MVKNGIWGTMLVCW+LWP+ANMINFL+VPVKLRVLFMNFVGLGWNIYLSAAVN
Sbjct:  270 GVLGALWIAPVVHYWFDTLEAAFKDKKAVPGAPAPSFSTRMVKALKMVILDQGIGAPLVNAGFMFLFTFATALTSGTGGIESGKKAGIMVKNGIWGTMLVCWKLWPIANMINFLYVPVKLRVLFMNFVGLGWNIYLSAAVN 410          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI)

HSP 1 Score: 256 bits (653), Expect = 1.250e-83
Identity = 121/141 (85.82%), Postives = 128/141 (90.78%), Query Frame = 1
Query:    1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
            GVLGALWIAP+VHYWFD LEA  KDKKAV GA APSF+MR+FKALKMV LDQ IGAPL+NAGFMFLFTFATAL SG GGIESGKKA TMVKNGIW TMLVCW+LWP+ANMINF FVP KLRVLF+NFVGLGWNIYLSAAVN
Sbjct:  154 GVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.520e-54
Identity = 88/139 (63.31%), Postives = 106/139 (76.26%), Query Frame = 1
Query:    1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAP--SFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLS 411
            G LGA+W+AP+ HYWFD LE  FK      G + P  +F  ++ KALKMV +DQ IGAP+VNAGFMFLFT ATA+VSGT    + KKA   V++ I GTMLVCWRLWP+AN+INF +VP KLRVLF+NFVGLGWNI+LS
Sbjct:   80 GALGAVWVAPLCHYWFDALEDFFK------GDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGTSPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A835YM13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM13_9STRA)

HSP 1 Score: 134 bits (338), Expect = 5.280e-37
Identity = 60/143 (41.96%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    1 GVLGALWIAPIVHYWFDGLEAVFKDKKA--VPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
            G +GAL++AP+ HYW+  L++      A  V GA  PS + R+  ALKM+ +DQAI +P+VN+GF+F +   T L  G+G   +    S  V++ +W T++  W++WP AN +NF+FVP++LR LF++ VG+ WN+ LS+  N
Sbjct:   69 GSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 211          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A7S2SVB6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVB6_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 2.330e-20
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 1
Query:   16 LWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGT-----GGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
            L++ P +HYWF+ ++ V K    +P  +    S+R+   L    +DQ +G   +N GF F F      + GT       +  G +  T +   +W T+L  WRLWP+AN +NF FVP+K RVLF NFV + W+IYLS  ++
Sbjct:  130 LFLGPSLHYWFNFIDYVGK----LPAIAKLKKSVRV---LVQTFVDQTVGVVTINGGFFFFFAVLQNTLDGTLFPLTRTLGQGWEKITSL---MWVTLLANWRLWPLANWVNFQFVPLKYRVLFSNFVAVFWSIYLSVVMH 260          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A7S3Y660_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y660_HETAK)

HSP 1 Score: 93.2 bits (230), Expect = 3.640e-20
Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 1
Query:    1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKAS--TMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
            G +GA +   ++H WF  L+A F  K+       P+      K++ M+ +DQ  GA  VNAGFM LF    AL  GT    +   A+   M+KN I   +LV +++WP AN +NFL VP++LR+LF N V L +N  LS  VN
Sbjct:  155 GFMGAFYFGTVIHAWFTRLDA-FASKRF------PNKEDHFKKSVAMICIDQTCGAVSVNAGFMLLFPLVNALTLGTFSFGTSFSAAWNDMLKNMI-PVLLVNYKIWPAANFMNFLVVPLQLRLLFTNVVSLVYNALLSLIVN 289          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A7R9Z314_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z314_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 1.180e-17
Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    4 VLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYL 408
            V G LW  P  H+W   +E +F+ K  +               ++ V+ DQ    PL N  FM   +FAT ++ G G  + G K    +K   W   L  WRLWP+A +IN+ FVP+KLRVLF+N V L W+ +L
Sbjct:  178 VYGFLWNGPSAHFWQKFIEVLFQGKSDIQ------------TVMRKVLFDQVTYGPLCNLMFM---SFATLVLEGRGLADLGAK----LKRDYWTVQLKGWRLWPVAALINYKFVPLKLRVLFINVVALIWSTFL 293          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A836CMN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.600e-16
Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  127 KALKMVVLDQAIGAPLVNAGFMFLFTFATALVSG---TGGIESGKKASTMVKN---------------GIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSA 414
            KAL M  +D  + +PL+N GF+++FT A  L SG   TG   +G +   ++ N                +W T+L  W++WP+AN  NFL VP  LRVL++N VGL W+  LSA
Sbjct:  157 KALNMTFIDT-LASPLINGGFLYVFTAANCLASGAAVTGAAGAGLEKLQVLANLMRIANLNNIVDKNTCLWPTLLASWKMWPLANFFNFLLVPPHLRVLYLNVVGLVWHTVLSA 269          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: UPI001B88CB3F (protein Mpv17-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CB3F)

HSP 1 Score: 79.0 bits (193), Expect = 1.220e-15
Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    4 VLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLS 411
            V G + + PI+  W+  L+  F+  +  P              +KMV+ DQ + AP +      L+ F T + +  G  ES ++  TM+K      +L  ++LWP A +INF F+P+  RVLF+NFV LGWN YL+
Sbjct:   56 VFGCVCLGPILRGWYFVLDKAFRGSRLAP--------------IKMVLADQLLFAPNI------LWIFLTGMAALRG--ESVEQIKTMLKRDYKSVLLNNYKLWPAAQIINFYFMPLHHRVLFVNFVALGWNTYLA 169          
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: F4QB98_CAVFA (Pmp22 family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QB98_CAVFA)

HSP 1 Score: 79.0 bits (193), Expect = 1.480e-15
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   25 APIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKN--GIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLS 411
            +P+VH+W   L+ +F++ K+             + A   +++DQ I AP +N      F  A AL+         K  S ++K    +W T+L  W++WP+A  INF FVP +LRVLF NFVG  W+IYL+
Sbjct:   69 SPLVHFWHIILDRLFRNVKSQ------------YAAWGKLIVDQLIFAPFIN----ICFYVALALLD-------RKPNSILIKLYLDLWPTLLASWKVWPIAQFINFSFVPAQLRVLFGNFVGFMWSIYLT 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3K4_9PHAE2.010e-8589.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6L5_ECTSI1.250e-8385.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D6PWV8_9PHAE1.520e-5463.31PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus ... [more]
A0A835YM13_9STRA5.280e-3741.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SVB6_9STRA2.330e-2036.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3Y660_HETAK3.640e-2039.86Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9Z314_9CHLO1.180e-1737.04Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A836CMN9_9STRA8.600e-1639.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001B88CB3F1.220e-1534.56protein Mpv17-like n=1 Tax=Gigantopelta aegis TaxI... [more]
F4QB98_CAVFA1.480e-1535.88Pmp22 family protein n=1 Tax=Cavenderia fasciculat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14613contigEcto-sp13_S_contig14613:122..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score255.8
Seed ortholog evalue1.2e-65
Seed eggNOG ortholog2880.D7G6L5
Model size426
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons2
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Cds size426
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.7399328-CDS-Ecto-sp13_S_contig14613:121..3061681462780.7399328-CDS-Ecto-sp13_S_contig14613:121..306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14613 122..306 +
1681462780.7603734-CDS-Ecto-sp13_S_contig14613:595..8361681462780.7603734-CDS-Ecto-sp13_S_contig14613:595..836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14613 596..836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14613.3543.1prot_Ecto-sp13_S_contig14613.3543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14613 122..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14613.3543.1

>prot_Ecto-sp13_S_contig14613.3543.1 ID=prot_Ecto-sp13_S_contig14613.3543.1|Name=mRNA_Ecto-sp13_S_contig14613.3543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVL
DQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLV
CWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN*
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mRNA from alignment at Ecto-sp13_S_contig14613:122..836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14613.3543.1 ID=mRNA_Ecto-sp13_S_contig14613.3543.1|Name=mRNA_Ecto-sp13_S_contig14613.3543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14613:122..836+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGCTTGGCGCTCTCTGGATCGCCCCCATTGTGCACTACTGGTTCGA TGGCCTCGAGGCTGTGTTTAAGGACAAGAAAGCCGTGCCCGGCGCCTCTG CCCCCAGCTTCTCCATGAGGATATTTAAGGCTCTCAAGATGGTGGTCCTG GACCAGGCCATCGGCGCGCCGCTCGTCAACGCGGGGTGAGTCGTCTTTGA CGTAGTCGGTTCCAGGGCGGAAGTCATGTTCTACCTTTTGTACCTTTTCG CTGGGCGGCGCTTCCACGCTATCCGGTTCTCACTCTCGCACGCACGTACC GGTTGCCTCCCCGCCCCGCCACCCGAACCAAACACTTGGAATCGTATCGA ATCGAATCGAATCGAACACAACTCAATCCAACGCAATCCAATTCCAACAC AACACAACACAACCTTTTAACCCAACCCAACCGAATCCACCACCTAACCC GACGCAACCGAACCGAACCGACAGTTTCATGTTCCTGTTCACGTTTGCGA CGGCCCTGGTGTCGGGCACCGGCGGCATCGAGTCCGGGAAGAAGGCCAGC ACCATGGTCAAGAATGGCATCTGGGGCACTATGCTCGTGTGCTGGAGGCT TTGGCCGATGGCGAACATGATCAACTTCTTGTTCGTGCCGGTGAAGTTGC GAGTGCTCTTCATGAACTTCGTGGGGTTGGGGTGGAACATTTACTTGTCC GCCGCTGTCAACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14613:122..836+

>mRNA_Ecto-sp13_S_contig14613.3543.1 ID=mRNA_Ecto-sp13_S_contig14613.3543.1|Name=mRNA_Ecto-sp13_S_contig14613.3543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14613:122..836+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTGCTTGGCGCTCTCTGGATCGCCCCCATTGTGCACTACTGGTTCGA
TGGCCTCGAGGCTGTGTTTAAGGACAAGAAAGCCGTGCCCGGCGCCTCTG
CCCCCAGCTTCTCCATGAGGATATTTAAGGCTCTCAAGATGGTGGTCCTG
GACCAGGCCATCGGCGCGCCGCTCGTCAACGCGGGTTTCATGTTCCTGTT
CACGTTTGCGACGGCCCTGGTGTCGGGCACCGGCGGCATCGAGTCCGGGA
AGAAGGCCAGCACCATGGTCAAGAATGGCATCTGGGGCACTATGCTCGTG
TGCTGGAGGCTTTGGCCGATGGCGAACATGATCAACTTCTTGTTCGTGCC
GGTGAAGTTGCGAGTGCTCTTCATGAACTTCGTGGGGTTGGGGTGGAACA
TTTACTTGTCCGCCGCTGTCAACTAA
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