mRNA_Ecto-sp13_S_contig14613.3543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE) HSP 1 Score: 264 bits (675), Expect = 2.010e-85 Identity = 126/141 (89.36%), Postives = 132/141 (93.62%), Query Frame = 1
Query: 1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
GVLGALWIAP+VHYWFD LEA FKDKKAVPGA APSFS R+ KALKMV+LDQ IGAPLVNAGFMFLFTFATAL SGTGGIESGKKA MVKNGIWGTMLVCW+LWP+ANMINFL+VPVKLRVLFMNFVGLGWNIYLSAAVN
Sbjct: 270 GVLGALWIAPVVHYWFDTLEAAFKDKKAVPGAPAPSFSTRMVKALKMVILDQGIGAPLVNAGFMFLFTFATALTSGTGGIESGKKAGIMVKNGIWGTMLVCWKLWPIANMINFLYVPVKLRVLFMNFVGLGWNIYLSAAVN 410
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI) HSP 1 Score: 256 bits (653), Expect = 1.250e-83 Identity = 121/141 (85.82%), Postives = 128/141 (90.78%), Query Frame = 1
Query: 1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
GVLGALWIAP+VHYWFD LEA KDKKAV GA APSF+MR+FKALKMV LDQ IGAPL+NAGFMFLFTFATAL SG GGIESGKKA TMVKNGIW TMLVCW+LWP+ANMINF FVP KLRVLF+NFVGLGWNIYLSAAVN
Sbjct: 154 GVLGALWIAPVVHYWFDALEAATKDKKAVAGAPAPSFAMRMFKALKMVTLDQTIGAPLINAGFMFLFTFATALTSGAGGIESGKKAGTMVKNGIWSTMLVCWKLWPIANMINFAFVPAKLRVLFLNFVGLGWNIYLSAAVN 294
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE) HSP 1 Score: 179 bits (454), Expect = 1.520e-54 Identity = 88/139 (63.31%), Postives = 106/139 (76.26%), Query Frame = 1
Query: 1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAP--SFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLS 411
G LGA+W+AP+ HYWFD LE FK G + P +F ++ KALKMV +DQ IGAP+VNAGFMFLFT ATA+VSGT + KKA V++ I GTMLVCWRLWP+AN+INF +VP KLRVLF+NFVGLGWNI+LS
Sbjct: 80 GALGAVWVAPLCHYWFDALEDFFK------GDNNPLDTFKGKMIKALKMVTVDQGIGAPVVNAGFMFLFTLATAMVSGTSPTSAFKKAGRFVRDNIKGTMLVCWRLWPVANLINFAYVPPKLRVLFLNFVGLGWNIFLS 212
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A835YM13_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM13_9STRA) HSP 1 Score: 134 bits (338), Expect = 5.280e-37 Identity = 60/143 (41.96%), Postives = 94/143 (65.73%), Query Frame = 1
Query: 1 GVLGALWIAPIVHYWFDGLEAVFKDKKA--VPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
G +GAL++AP+ HYW+ L++ A V GA PS + R+ ALKM+ +DQAI +P+VN+GF+F + T L G+G + S V++ +W T++ W++WP AN +NF+FVP++LR LF++ VG+ WN+ LS+ N
Sbjct: 69 GSMGALYLAPLAHYWYGALDSAIVKTPAGQVDGAEKPSTATRVTGALKMLFIDQAIASPIVNSGFLFAYAAFTGLAGGSGFGAALHSGSAKVQSALWPTLVASWKIWPAANFLNFMFVPLQLRALFLSVVGVAWNLVLSSIAN 211
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A7S2SVB6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVB6_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.330e-20 Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 1
Query: 16 LWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGT-----GGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
L++ P +HYWF+ ++ V K +P + S+R+ L +DQ +G +N GF F F + GT + G + T + +W T+L WRLWP+AN +NF FVP+K RVLF NFV + W+IYLS ++
Sbjct: 130 LFLGPSLHYWFNFIDYVGK----LPAIAKLKKSVRV---LVQTFVDQTVGVVTINGGFFFFFAVLQNTLDGTLFPLTRTLGQGWEKITSL---MWVTLLANWRLWPLANWVNFQFVPLKYRVLFSNFVAVFWSIYLSVVMH 260
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A7S3Y660_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y660_HETAK) HSP 1 Score: 93.2 bits (230), Expect = 3.640e-20 Identity = 57/143 (39.86%), Postives = 80/143 (55.94%), Query Frame = 1
Query: 1 GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKAS--TMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSAAVN 423
G +GA + ++H WF L+A F K+ P+ K++ M+ +DQ GA VNAGFM LF AL GT + A+ M+KN I +LV +++WP AN +NFL VP++LR+LF N V L +N LS VN
Sbjct: 155 GFMGAFYFGTVIHAWFTRLDA-FASKRF------PNKEDHFKKSVAMICIDQTCGAVSVNAGFMLLFPLVNALTLGTFSFGTSFSAAWNDMLKNMI-PVLLVNYKIWPAANFMNFLVVPLQLRLLFTNVVSLVYNALLSLIVN 289
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A7R9Z314_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9Z314_9CHLO) HSP 1 Score: 86.7 bits (213), Expect = 1.180e-17 Identity = 50/135 (37.04%), Postives = 70/135 (51.85%), Query Frame = 1
Query: 4 VLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYL 408
V G LW P H+W +E +F+ K + ++ V+ DQ PL N FM +FAT ++ G G + G K +K W L WRLWP+A +IN+ FVP+KLRVLF+N V L W+ +L
Sbjct: 178 VYGFLWNGPSAHFWQKFIEVLFQGKSDIQ------------TVMRKVLFDQVTYGPLCNLMFM---SFATLVLEGRGLADLGAK----LKRDYWTVQLKGWRLWPVAALINYKFVPLKLRVLFINVVALIWSTFL 293
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: A0A836CMN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN9_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 8.600e-16 Identity = 45/114 (39.47%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 127 KALKMVVLDQAIGAPLVNAGFMFLFTFATALVSG---TGGIESGKKASTMVKN---------------GIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLSA 414
KAL M +D + +PL+N GF+++FT A L SG TG +G + ++ N +W T+L W++WP+AN NFL VP LRVL++N VGL W+ LSA
Sbjct: 157 KALNMTFIDT-LASPLINGGFLYVFTAANCLASGAAVTGAAGAGLEKLQVLANLMRIANLNNIVDKNTCLWPTLLASWKMWPLANFFNFLLVPPHLRVLYLNVVGLVWHTVLSA 269
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: UPI001B88CB3F (protein Mpv17-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CB3F) HSP 1 Score: 79.0 bits (193), Expect = 1.220e-15 Identity = 47/136 (34.56%), Postives = 72/136 (52.94%), Query Frame = 1
Query: 4 VLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKNGIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLS 411
V G + + PI+ W+ L+ F+ + P +KMV+ DQ + AP + L+ F T + + G ES ++ TM+K +L ++LWP A +INF F+P+ RVLF+NFV LGWN YL+
Sbjct: 56 VFGCVCLGPILRGWYFVLDKAFRGSRLAP--------------IKMVLADQLLFAPNI------LWIFLTGMAALRG--ESVEQIKTMLKRDYKSVLLNNYKLWPAAQIINFYFMPLHHRVLFVNFVALGWNTYLA 169
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Match: F4QB98_CAVFA (Pmp22 family protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QB98_CAVFA) HSP 1 Score: 79.0 bits (193), Expect = 1.480e-15 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 25 APIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLDQAIGAPLVNAGFMFLFTFATALVSGTGGIESGKKASTMVKN--GIWGTMLVCWRLWPMANMINFLFVPVKLRVLFMNFVGLGWNIYLS 411
+P+VH+W L+ +F++ K+ + A +++DQ I AP +N F A AL+ K S ++K +W T+L W++WP+A INF FVP +LRVLF NFVG W+IYL+
Sbjct: 69 SPLVHFWHIILDRLFRNVKSQ------------YAAWGKLIVDQLIFAPFIN----ICFYVALALLD-------RKPNSILIKLYLDLWPTLLASWKVWPIAQFINFSFVPAQLRVLFGNFVGFMWSIYLT 176 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14613.3543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14613.3543.1 >prot_Ecto-sp13_S_contig14613.3543.1 ID=prot_Ecto-sp13_S_contig14613.3543.1|Name=mRNA_Ecto-sp13_S_contig14613.3543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp GVLGALWIAPIVHYWFDGLEAVFKDKKAVPGASAPSFSMRIFKALKMVVLback to top mRNA from alignment at Ecto-sp13_S_contig14613:122..836+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14613.3543.1 ID=mRNA_Ecto-sp13_S_contig14613.3543.1|Name=mRNA_Ecto-sp13_S_contig14613.3543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14613:122..836+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14613:122..836+ >mRNA_Ecto-sp13_S_contig14613.3543.1 ID=mRNA_Ecto-sp13_S_contig14613.3543.1|Name=mRNA_Ecto-sp13_S_contig14613.3543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14613:122..836+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |