mRNA_Ecto-sp13_S_contig14610.3541.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14610.3541.1
Unique NamemRNA_Ecto-sp13_S_contig14610.3541.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14610.3541.1 vs. uniprot
Match: D7G629_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G629_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.510e-48
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:    7 ITLDGATSLGDGTVRDIARHCPGLTSLSMVELTRTSXXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSN 336
            IT   A + GDGTVRDIARHCPGLTSLSMVELTRT XXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSN
Sbjct:  346 ITTRHAPNTGDGTVRDIARHCPGLTSLSMVELTRTXXXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSN 455
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14610.3541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G629_ECTSI1.510e-4893.64Hypothetical leucine rich repeat calmodulin bindin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14610contigEcto-sp13_S_contig14610:2395..4174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score175.3
Seed ortholog evalue1.8e-41
Seed eggNOG ortholog2880.D7G629
Preferred nameLRRC29
Model size369
KEGG koko:K04952,ko:K10268,ko:K10275
KEGG TC1.A.1.5.19,1.A.1.5.3,1.A.1.5.4
KEGG Pathwayko04022,ko04024,ko04740,ko04744,map04022,map04024,map04740,map04744
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
Cds size369
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04040,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.631419-CDS-Ecto-sp13_S_contig14610:2394..24281681462780.631419-CDS-Ecto-sp13_S_contig14610:2394..2428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14610 2395..2428 +
1681462780.6470895-CDS-Ecto-sp13_S_contig14610:3321..35331681462780.6470895-CDS-Ecto-sp13_S_contig14610:3321..3533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14610 3322..3533 +
1681462780.659165-CDS-Ecto-sp13_S_contig14610:4051..41741681462780.659165-CDS-Ecto-sp13_S_contig14610:4051..4174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14610 4052..4174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14610.3541.1prot_Ecto-sp13_S_contig14610.3541.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14610 2395..4174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14610.3541.1

>prot_Ecto-sp13_S_contig14610.3541.1 ID=prot_Ecto-sp13_S_contig14610.3541.1|Name=mRNA_Ecto-sp13_S_contig14610.3541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
RDITLDGATSLGDGTVRDIARHCPGLTSLSMVELTRTSDASLRELGRRCP
LLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACK
ITDDSLLAVGSNSPLLEELGIR*
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mRNA from alignment at Ecto-sp13_S_contig14610:2395..4174+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14610.3541.1 ID=mRNA_Ecto-sp13_S_contig14610.3541.1|Name=mRNA_Ecto-sp13_S_contig14610.3541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14610:2395..4174+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGACATCACTCTCGATGGGGCAACATCTTTGGGTATGGAAAAGGTGGC
GTGTCCTACACTAACACGTCGATAGAAGCAGCCGTAAAACAGCGTGACGG
TCCAGGCGGTGAACACCCCGGATTCTACCAAAATTCTTGTTTTCGCGCTT
GCAAAGGAGAGGGGATTCAAACGCGATGGTACAAGTTAAGGGAAGGTCAA
GGCAGGCGGGAAGACACGTTCTAAACAACACTAAACCCCGCCCTGTGTTT
TTGGCTGAAGCTCTTTGCAGTGATGTAGAGGTCTTCTACGTTTTGCCTTC
GGTAGAGCTTCATCAGTGACAGGAAACGGTCTTACGATTCCGTCCCGGTT
GACATGTGATGCGAAGGGCCAAGCGACGAAGGCAGAAAAACTAAAAAACG
CCACCCCCGATCATCTTCTTCGGCACAACCGTTTGATTTACCCTGCTGCA
ATTTTAAATTTCACCGCGGCTCAGATGGTATGTACGACAGCGCGGTGTAC
ATCCCTTTGGTCATGACCGGTGCCCACCCCCTCCCCTCCCAACCCCTGCT
CTACACATACACGCTTTCTGTAGCTATAGCGTTGTGTGCGTACCGGATAA
TGTGAAAAGGTGGAGAATCGACGACCATCTCGACAATTGGTGGTCGGTGT
TGTCGTATGGGCCCGATTTTCACCATGAGTTGCCTTTTATCTCGTTTCCT
TCCCGCGGCCACCGTCACCGCGACCGCTACCGGTTGTTTTTCTCGTCGTA
ATATTTGACGTGTATACGACAAACATGACATATTCACTGCTGTACACGCC
GAAACAGCTCAGGGATAGGCCGACGACCCCATGTATTACTATCGCCGCCA
CTCCCACCACCCTTTCTTTAGCCTTACACATGATACTAGAAACAACCGGA
TCACAACACATCACACCCCAAACACAGGAGATGGCACTGTCCGGGATATC
GCGCGCCACTGCCCGGGCCTAACGTCTCTGAGCATGGTGGAGCTCACGCG
CACATCGGACGCGAGTCTTAGGGAGCTCGGGAGGCGTTGCCCGCTGCTGA
GGCTGCTAGACAGCTCCTCCGACATCAACGTGCTTGAGACGTCGCACCGC
ACGCGGGTGCCGAAGCTGGGAGGGGACGGCGTACGCGAGGTGTGGTACAC
AATGCACGAATTACACGCACCTGTTCCTGTTTCTTCCACGTCCTGTCTGT
CCATTCTACTTACCCTGCGATCTGGTGCTGACCACAAGGGCTGCCTCTGT
CGGTTCTTTCAACATGTCATTTGGTACTGAGTTGCTCGCCTTGGCTACCT
GCCGGGATGGCACATTCTTACGGTATGTACATCGAGGCGATCCCGGATAA
GAAACTCACGACTATTCCACTCCCTCGCGCCGAACCCGACAGTTTTGAAT
TGAAGCGTTTGGTTTTGCTTCTGACGCGTTGTTTCGTGTTGAGCGAAACC
ACCAAAGGCAAGGCATGGAAGGCGATCAGGAAAAAAAGCTGTGTGCAGCT
ACCGTTGTTGGTCAGGACGGCGAACGTACACCGTTTTCCATTTTTCGCGA
AGAACGTTCCGTGGTATGTACGGAACTTAAAAAAAAAACGCTGAAGACGG
TGTCTGGCTGCATCCCCCCACGGTGATTTCCCCCTCGCTTGAACACTGCA
CTTTTAGCTGAGCCTGGGAACTCCTTGCCTCACGGTCCTGAGGCTCAATG
GCGCATGCAAGATTACCGATGACTCCCTCCTGGCGGTGGGCTCCAACAGC
CCCCTGCTAGAGGAGCTCGGCATCAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14610:2395..4174+

>mRNA_Ecto-sp13_S_contig14610.3541.1 ID=mRNA_Ecto-sp13_S_contig14610.3541.1|Name=mRNA_Ecto-sp13_S_contig14610.3541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14610:2395..4174+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGACATCACTCTCGATGGGGCAACATCTTTGGGAGATGGCACTGTCCG
GGATATCGCGCGCCACTGCCCGGGCCTAACGTCTCTGAGCATGGTGGAGC
TCACGCGCACATCGGACGCGAGTCTTAGGGAGCTCGGGAGGCGTTGCCCG
CTGCTGAGGCTGCTAGACAGCTCCTCCGACATCAACGTGCTTGAGACGTC
GCACCGCACGCGGGTGCCGAAGCTGGGAGGGGACGGCGTACGCGAGCTGA
GCCTGGGAACTCCTTGCCTCACGGTCCTGAGGCTCAATGGCGCATGCAAG
ATTACCGATGACTCCCTCCTGGCGGTGGGCTCCAACAGCCCCCTGCTAGA
GGAGCTCGGCATCAGGTGA
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