prot_Ecto-sp13_S_contig14610.3541.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14610.3541.1
Unique Nameprot_Ecto-sp13_S_contig14610.3541.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length123
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14610.3541.1 vs. uniprot
Match: D7G629_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G629_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.510e-48
Identity = 103/110 (93.64%), Postives = 104/110 (94.55%), Query Frame = 0 
Query:    3 ITLDGATSLGDGTVRDIARHCPGLTSLSMVELTRTSXXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSN 112
            IT   A + GDGTVRDIARHCPGLTSLSMVELTRT XXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSN
Sbjct:  346 ITTRHAPNTGDGTVRDIARHCPGLTSLSMVELTRTXXXXXXXXXXXXXLLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACKITDDSLLAVGSN 455
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14610.3541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G629_ECTSI1.510e-4893.64Hypothetical leucine rich repeat calmodulin bindin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..122
e-value: 6.3E-15
score: 56.4
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 9..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14610contigEcto-sp13_S_contig14610:2395..4174 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14610.3541.1mRNA_Ecto-sp13_S_contig14610.3541.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14610 2395..4174 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14610.3541.1 ID=prot_Ecto-sp13_S_contig14610.3541.1|Name=mRNA_Ecto-sp13_S_contig14610.3541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
RDITLDGATSLGDGTVRDIARHCPGLTSLSMVELTRTSDASLRELGRRCP
LLRLLDSSSDINVLETSHRTRVPKLGGDGVRELSLGTPCLTVLRLNGACK
ITDDSLLAVGSNSPLLEELGIR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf