mRNA_Ecto-sp13_S_contig14610.3540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14610.3540.1
Unique NamemRNA_Ecto-sp13_S_contig14610.3540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14610.3540.1 vs. uniprot
Match: D7G629_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G629_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 2.620e-34
Identity = 70/88 (79.55%), Postives = 73/88 (82.95%), Query Frame = 2 
Query:    2 QLSELCLMGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCKMLENLNISRCHLLSDLALEYLAKGSGEAKPTPLQVLNVAGVGNFT 265
            QLSELCLMGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCK+LENLNISRC LL+DLALEYL             VL+VAGVGN T
Sbjct:  210 QLSELCLMGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCKVLENLNISRCPLLTDLALEYL-------------VLDVAGVGNLT 284
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BLAST of mRNA_Ecto-sp13_S_contig14610.3540.1 vs. uniprot
Match: A0A7S1TZ14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TZ14_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.310e-6
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 2 
Query:    2 QLSELCLMGLQRATFTSTNLRCLDVRGM-AIADIAFGWVAQGCKMLENLNISRCHLLSDLALEYLAK 199
            QL++LC+MGLQR    S +L  L ++ M  + D A  +++ GCK LE L++  C  LSD  L+YL +
Sbjct:  246 QLTDLCMMGLQRGRTHSMSLVKLVLQNMHTLHDSACNFISLGCKKLEELDLRNCLHLSDAGLQYLTR 312
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14610.3540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G629_ECTSI2.620e-3479.55Hypothetical leucine rich repeat calmodulin bindin... [more]
A0A7S1TZ14_9STRA7.310e-641.79Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14610contigEcto-sp13_S_contig14610:1144..2349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score121.7
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog2880.D7G629
Preferred nameLRRC29
Model size266
KEGG koko:K04952,ko:K10268,ko:K10275
KEGG TC1.A.1.5.19,1.A.1.5.3,1.A.1.5.4
KEGG Pathwayko04022,ko04024,ko04740,ko04744,map04022,map04024,map04740,map04744
KEGG ModuleM00694
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG1947@1,KOG1947@2759,KOG4341@1,KOG4341@2759
Cds size243
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04040,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.5190957-UTR-Ecto-sp13_S_contig14610:1143..11651681462780.5190957-UTR-Ecto-sp13_S_contig14610:1143..1165Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14610 1144..1165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462780.5301468-CDS-Ecto-sp13_S_contig14610:1165..12641681462780.5301468-CDS-Ecto-sp13_S_contig14610:1165..1264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14610 1166..1264 +
1681462780.5719347-CDS-Ecto-sp13_S_contig14610:1461..15721681462780.5719347-CDS-Ecto-sp13_S_contig14610:1461..1572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14610 1462..1572 +
1681462780.5924604-CDS-Ecto-sp13_S_contig14610:2316..23491681462780.5924604-CDS-Ecto-sp13_S_contig14610:2316..2349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14610 2317..2349 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14610.3540.1prot_Ecto-sp13_S_contig14610.3540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14610 1166..2349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14610.3540.1

>prot_Ecto-sp13_S_contig14610.3540.1 ID=prot_Ecto-sp13_S_contig14610.3540.1|Name=mRNA_Ecto-sp13_S_contig14610.3540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCKMLENLNISRCHLLS
DLALEYLAKGSGEAKPTPLQVLNVAGVGNFT
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mRNA from alignment at Ecto-sp13_S_contig14610:1144..2349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14610.3540.1 ID=mRNA_Ecto-sp13_S_contig14610.3540.1|Name=mRNA_Ecto-sp13_S_contig14610.3540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1206bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14610:1144..2349+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCTGTCAGAACTCTGCCTTATGGGCCTCCAGAGGGCCACGTTTACCT
CCACCAACCTCAGGTGCCTCGACGTCCGAGGCATGGCCATCGCGGACATC
GCCTTCGGATGGGTGGCGCAGGTGCGAGCAATCTGTCAAGCAGAATACAG
AACCTAGTCGCATGCAATTCGAATCCAACTCTCTCTTTTATTAACGAGCC
AATTTCTGTGGATGAAATCGGTAGCTGCCCTCGTGTTCACGGCCGCCACA
ACTGAGATGAGGCCTGTAAACGGCAGCACTTTCCGAAAGACTTTCGCGCG
TGCATGCTATTTGGACAGGGGTGCAAGATGCTGGAGAACTTGAACATCTC
CCGGTGCCACCTCCTGAGTGATCTAGCCCTGGAATATCTTGCCAAAGGCT
CGGGAGAGGCGAAGCCGACGCCATTGCAGGTATTGTTCTTTGAAGATGCG
AAACTCTGTACCTGCGGCAGCCTAGCTCAAGAACGGAGTGCTGCCATTCT
TGGTACTTCCCATCTGCCGTCCCACGCTTCCCGCATGTCCCATGGGCGGC
CTACGGGATGCGTGGGACGCTTGGGGCGGCATATGGAACGACATTGGGAC
ATGATGGACGCGTAACCATAATCCTAACCCTAGCGCTAACAACAGTGGTA
GCCTCAAAACGTCCACCCAATGCGCCCGGCCTATTGGGCGGGTGGGACGC
CCCACCGGGATTCCCCTGAGCCGTCCGCGTGGGACGTTCCATGCGATGTC
CCATGGACCAACCATCCTATGCGTCCCACGTGACGTCCCATGGGAAATGC
CAATAAGGACATAGTCGGATCCGACATGCGCACAGTGTCCGAGTGTGGGT
TGCTTACCCTACCACTCTTTGCATATCAGCTGTGCCCTTTCAGCGCGCAC
GTGCACTGCCTGGTGTAGGCAAAGAGGGTACGCAATGCGTATCCTTCACA
GATGTAGCAATATGTATGAGCGCACGTGCTCTGCGCCATGGACGATAGTC
CAGGCATTTTGCCGCGCAAACAGCCATACCGTGTCCCTGACTTGGCACCC
AGTGGTCGTTACCATGAATCCAAAATAGGTCAGGTGAATAAACGCATTAA
TCTTTTGCGTACACCACCATCACCACCACCACCACCACCAAAACCAACAG
CAGCAACAACGAACAACGAACAGGTACTGAACGTCGCTGGAGTTGGCAAT
TTCACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14610:1144..2349+

>mRNA_Ecto-sp13_S_contig14610.3540.1 ID=mRNA_Ecto-sp13_S_contig14610.3540.1|Name=mRNA_Ecto-sp13_S_contig14610.3540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14610:1144..2349+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCTCCAGAGGGCCACGTTTACCTCCACCAACCTCAGGTGCCTCGA
CGTCCGAGGCATGGCCATCGCGGACATCGCCTTCGGATGGGTGGCGCAGG
GGTGCAAGATGCTGGAGAACTTGAACATCTCCCGGTGCCACCTCCTGAGT
GATCTAGCCCTGGAATATCTTGCCAAAGGCTCGGGAGAGGCGAAGCCGAC
GCCATTGCAGGTACTGAACGTCGCTGGAGTTGGCAATTTCACT
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