prot_Ecto-sp13_S_contig14610.3540.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14610.3540.1
Unique Nameprot_Ecto-sp13_S_contig14610.3540.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length81
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14610.3540.1 vs. uniprot
Match: D7G629_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G629_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 6.090e-30
Identity = 63/81 (77.78%), Postives = 66/81 (81.48%), Query Frame = 0 
Query:    1 MGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCKMLENLNISRCHLLSDLALEYLAKGSGEAKPTPLQVLNVAGVGNFT 81
            MGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCK+LENLNISRC LL+DLALEYL             VL+VAGVGN T
Sbjct:  217 MGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCKVLENLNISRCPLLTDLALEYL-------------VLDVAGVGNLT 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14610.3540.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G629_ECTSI6.090e-3077.78Hypothetical leucine rich repeat calmodulin bindin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 35..60
e-value: 1.7E-5
score: 34.3
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 2..81
e-value: 1.2E-10
score: 43.0
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 10..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14610contigEcto-sp13_S_contig14610:1166..2349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14610.3540.1mRNA_Ecto-sp13_S_contig14610.3540.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14610 1144..2349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14610.3540.1 ID=prot_Ecto-sp13_S_contig14610.3540.1|Name=mRNA_Ecto-sp13_S_contig14610.3540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MGLQRATFTSTNLRCLDVRGMAIADIAFGWVAQGCKMLENLNISRCHLLS
DLALEYLAKGSGEAKPTPLQVLNVAGVGNFT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf