mRNA_Ecto-sp13_S_contig14598.3526.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14598.3526.1
Unique NamemRNA_Ecto-sp13_S_contig14598.3526.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14598.3526.1 vs. uniprot
Match: A0A6H5LKX2_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKX2_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 2.130e-32
Identity = 83/113 (73.45%), Postives = 87/113 (76.99%), Query Frame = 2 
Query:    2 YLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAVENKLRGPNKQKIAAQVGLLKF---WLTCLGDRDRLSWTCSLVAVQCSDWSLDACV 331
            YLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQA+E KLRGPNKQKIAAQ  L K        LG    L + C L AV C  W L + +
Sbjct:  152 YLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAIEIKLRGPNKQKIAAQEDLPKMNANLANFLGAEVLLDFLCILCAV-CYAWDLASSI 263
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BLAST of mRNA_Ecto-sp13_S_contig14598.3526.1 vs. uniprot
Match: D8LR36_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR36_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.910e-20
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 2 
Query:    2 YLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQ 169
            YLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSA+EALEEEQ
Sbjct:  149 YLQLSVAMIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAIEALEEEQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14598.3526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKX2_9PHAE2.130e-3273.45DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LR36_ECTSI3.910e-2098.21DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14598contigEcto-sp13_S_contig14598:366..3717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1415
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionDomain of unknown function DUF4149
Ec32 orthologEc-06_004500.1
Cds size399
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14598.3526.1prot_Ecto-sp13_S_contig14598.3526.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14598 388..2723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462779.2953694-UTR-Ecto-sp13_S_contig14598:365..3871681462779.2953694-UTR-Ecto-sp13_S_contig14598:365..387Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14598 366..387 +
1681462779.3553183-UTR-Ecto-sp13_S_contig14598:2723..37171681462779.3553183-UTR-Ecto-sp13_S_contig14598:2723..3717Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14598 2724..3717 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462779.3057823-CDS-Ecto-sp13_S_contig14598:387..4351681462779.3057823-CDS-Ecto-sp13_S_contig14598:387..435Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14598 388..435 +
1681462779.315425-CDS-Ecto-sp13_S_contig14598:681..7801681462779.315425-CDS-Ecto-sp13_S_contig14598:681..780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14598 682..780 +
1681462779.330152-CDS-Ecto-sp13_S_contig14598:1446..14931681462779.330152-CDS-Ecto-sp13_S_contig14598:1446..1493Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14598 1447..1493 +
1681462779.3432472-CDS-Ecto-sp13_S_contig14598:2518..27231681462779.3432472-CDS-Ecto-sp13_S_contig14598:2518..2723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14598 2519..2723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14598.3526.1

>prot_Ecto-sp13_S_contig14598.3526.1 ID=prot_Ecto-sp13_S_contig14598.3526.1|Name=mRNA_Ecto-sp13_S_contig14598.3526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQA
VENKLRGPNKQKIAAQVGLLKFWLTCLGDRDRLSWTCSLVAVQCSDWSLD
ACVRRGTKMHSGGKTTFREIYPHPQHEVMRRA*
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mRNA from alignment at Ecto-sp13_S_contig14598:366..3717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14598.3526.1 ID=mRNA_Ecto-sp13_S_contig14598.3526.1|Name=mRNA_Ecto-sp13_S_contig14598.3526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3352bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14598:366..3717+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACCTTCAGCTATCCGTGGCAATGATCATGAGCCTGGGAACGTCGAGTC
TCGTGATTGGACACGCAAACGTGAGAGAGCCCCCTGCGCATGGAGATCAT
GCGGATCACACGTACCGCTCGAACGCCTTCCCGAACAGGACGACGACTCA
GACGTTGGTGGTGGTTTTCACATAGGTTGTTTCTCCTGTCGTTAGCAGGT
GCCATGGCCATGTGGAATGCAGGTTCTGCTCCCTGACGACGTAGTCCCCT
TCCTCTGAAAGCAACCCGAGCACCTTCCCACCCTCCTTGCGCGCGTGCCG
TTCTCCTGCTTGACAGACAACGCAACTTGTTATCCTCGGGATAGCCCTCG
GCATCACCTTGTACAACGCCATCGTCCTGGAGCCGTCGGCAGTAGAGGCT
CTTGAGGAGGAGCAGGTTAGTGTTCCCGTTGGTGATAATTTGTTGGCGGG
GGCCGTCGCGATTCTTGTCCCTGGCGCGTGCGTTGGGATGCCCGCGTGCG
TTTTCTTTGCCGCAACGCCGTGTTTGCGGGGACCCCGCACCAGGTGACTG
AATGGTGAAGCATGGGTCATCGTGCGATTCAAAACCGCGTGTCCCTCGTT
TTCATTCGTGCCCCCTACGTTCGGCGCAGATGAGTGTGAGTAGTTTCTAC
CAGCCAGCTCTGGATCTTGGCCGTTATTTGGTTGGTCGATGTACCGTAGG
TGTGAGGTGTGCTGGGCATTGTCTCAAAGCGAGGACAGCTGTTGTTGTCG
CTGTCGCTATTGTGGTTGATATATTGTTGTTGTCTGCTGTGATTGCCGTG
TCTGGCGGATCGCCGCTATCGCTCACGAGTTTATTCAAGAATGTCAACGA
CCGCTAGCGTGTGGTGCTTTGAAGCGAGTTGCAGTTGCCTGTAGCGCTAC
CACCGGTGATTTCGCACTCGTCTTTCTGTGCTGCTGCTGCTGCCACCCTT
ACACTAATACATGCTTCACGGTCGTAGAGGACGCCCGGGGGGGGATAGAT
TGCTTGTACTCCACTTCATACGACTCCTGCTGCTGCTTCTGTTGCTCTGG
CGGCTTTTGTCACCATGGCGTTTCGCCTCAGGCGGTAGAAAATAAACTGC
GAGGGCCGAATAAGCAGAAGATCGCAGCACAAGAAGACCTTCCCAAGATG
AACGCAAACTTAGGTCAGTGGACGCCCGACTGGGAATGCATTTTTCAGTG
TCAAACGAACGCTGTCTACGTGGACCGTGTGCTTGTCGGTTCCGTGCGGC
ACTGGATCCATCCACACATGATGGACACAGGCTTCAACTACGCCCTGTTC
GTAGAACGCTGTGGCTGTTGAAGCTTTTTTCTGTTGAGGTTGCTGCGAGG
TTTCAACATAAGATTGGGCGGCCCGGTGTCCGAGACTTCTGTGGTCGCCA
TCGTGTGGGTTGAAAGTTGGGAGATCGGTCCCACCTGTTTCTTGGAAAGA
TACACACGCCCCTTTCGCGCGAGAAGTGGAAAAATGTGTTGTTGAGTTTA
TCCTCTGGACACGGCTCAGGCCCCACTCCGTCATCCGAACCACGAACCGA
TCAATAGCAAGGGTCACACCAATTATTTTTCATCGTTTGTCGGCGCATGG
TGTTGCACGGGATGGGGCTAATACATACCTTAGTATTCAGAGCACGGAGC
CAAACCACCTCGTGTTTTCGTACCTCGTTCCATGGACGATCCCATAACCC
ACGGGTCGTCCAAACGGGCGAAGGGTGAGTAGCTGTCGGACACCACCGCC
TCCGCCCCTTTGCCCTTCGACAGCACCAATCATTGATGCCATCGCTCAAT
GGTGAACAGAGGTCACTTGTGTTCCTCGGTGTACTGCTCCGTCTGCGGTG
CACAAGATTATCGACGAACAATTTAGAAAGTACGCGCGCGCAAACGTGTC
TTTGTCGAATGATTTCCTCCGGGTGTTGTGTCGTTCCGTCTTGTTCTTTC
TGCCATTTCCTGTTTCTGAAAAGCGAACTTCCTAGGCGCGGAGGTGTTGC
TGGACTTCTTGTGCATTCTGTGCGCGGTCTGCTACGCTTGGGACCTGGCC
TCCTCCATCACCTTCGCTTGATGCTTCGGTCTACCGATCGATGTTCGCTG
GCTGCTTGGTCGAGCGGTATTTGCTGGCGGTCCATTCCGGGTCGGCTGTT
ATTACAAGTTGGGTTGTTGAAGTTCTGGTTGACTTGCCTGGGTGACCGTG
ACCGCCTGTCGTGGACCTGTTCCTTGGTTGCCGTGCAATGTTCGGACTGG
TCCCTTGATGCATGTGTTCGCCGCGGGACCAAGATGCACAGCGGTGGTAA
GACGACGTTTCGTGAAATTTATCCACACCCTCAACATGAAGTCATGCGCA
GAGCATAAATATGTGCCGTATGTATGCTATTGCGGGGGGCGGTGAAAAGA
AAACTCGTGGGTGGTGGGGGCTCGACGTATTATAGATTATCGAGAGGCAA
GCCCCTTCATCATCTTGAGAGCACCGTTTTCGCCAGTCAGCACCTCGAGA
CGAAACCAACACGGCGGGAAAGTCGTGATTATGACAATGTTTTGTCCTCG
ATGAGGTGGAATACAGGAATCATGTGCAACAATCTTGTGCGGGAGGTGCA
CAACGGCGGTGAGACTCGGCGGGTTCGGTGTCAGCGTTTTATTGCGATCA
CGACGTGCACACATTTGTTCGTTTACAAGCTTATGGTGAAATATCTGGTT
TAGAGCGGAAATCGCTTGCTTGCGACCCTTTCGTTAAGCAGTATTATAGA
GGGCATAACGCGTTATTTTATTCGTTCAGGTCATTTCTTTCAGTGTCCCT
CAGTGGAACAAGTGTGCTTCCTACCCACTTAGAATGATCCCGACCGTGGT
GGAACCTTACTCGAAGCACCTGATTTGAGAAACCAATTTTTGGTATTGCG
GACGATGTCCGACCATCCTGTTGGGTGTGTTTTTTTTTCGTCCCGTCCAC
CATTGGAGGGCTGCCTTTTTCCCGGCTCGGCGCCACTGGGTACACGAAGG
CATTGGCGGCCGAGGTTCACTTGTACAATACGGTATTGGGATGTTTGCGT
GGAAGGGGGGCACGCAGGTTCTGCATTAGCCTGGGATACGTAAACTTGTT
CGAAGGACCGCAAGTGTGTGAAAAAGGACCATGTCCGATAATCTTTAACG
TAACGTGTTCAGGTCACTTTTGGGCAGAACGCTACCAAATTTCGTTGGTG
TACAAAATGTGGTAAATTTGGCACGGCGCTGTGTTTGCTGGCTGCAGAGA
GCCGGACTGGAACGCGGTCTACTTCCTGCCAAGTGTTCACTCTTCCGGCG
AGAGCACACTCTGTGTCGCGCTATGGGAAAGGTTTTTCTCCGTAGCATGG
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14598:366..3717+

>mRNA_Ecto-sp13_S_contig14598.3526.1 ID=mRNA_Ecto-sp13_S_contig14598.3526.1|Name=mRNA_Ecto-sp13_S_contig14598.3526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14598:366..3717+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCATGAGCCTGGGAACGTCGAGTCTCGTGATTGGACACGCAAACAC
AACGCAACTTGTTATCCTCGGGATAGCCCTCGGCATCACCTTGTACAACG
CCATCGTCCTGGAGCCGTCGGCAGTAGAGGCTCTTGAGGAGGAGCAGGCG
GTAGAAAATAAACTGCGAGGGCCGAATAAGCAGAAGATCGCAGCACAAGT
TGGGTTGTTGAAGTTCTGGTTGACTTGCCTGGGTGACCGTGACCGCCTGT
CGTGGACCTGTTCCTTGGTTGCCGTGCAATGTTCGGACTGGTCCCTTGAT
GCATGTGTTCGCCGCGGGACCAAGATGCACAGCGGTGGTAAGACGACGTT
TCGTGAAATTTATCCACACCCTCAACATGAAGTCATGCGCAGAGCATAA
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