prot_Ecto-sp13_S_contig14598.3526.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14598.3526.1
Unique Nameprot_Ecto-sp13_S_contig14598.3526.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length133
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14598.3526.1 vs. uniprot
Match: A0A6H5LKX2_9PHAE (DUF4149 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKX2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 9.730e-32
Identity = 76/106 (71.70%), Postives = 80/106 (75.47%), Query Frame = 0 
Query:    1 MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAVENKLRGPNKQKIAAQVGLLKF---WLTCLGDRDRLSWTCSLVAVQCSDWSLDACV 103
            MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQA+E KLRGPNKQKIAAQ  L K        LG    L + C L AV C  W L + +
Sbjct:  159 MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQAIEIKLRGPNKQKIAAQEDLPKMNANLANFLGAEVLLDFLCILCAV-CYAWDLASSI 263
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BLAST of mRNA_Ecto-sp13_S_contig14598.3526.1 vs. uniprot
Match: D8LR36_ECTSI (DUF4149 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR36_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.350e-18
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 0 
Query:    1 MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQ 49
            MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSA+EALEEEQ
Sbjct:  156 MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAIEALEEEQ 204
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14598.3526.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKX2_9PHAE9.730e-3271.70DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LR36_ECTSI1.350e-1897.96DUF4149 domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..132
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14598contigEcto-sp13_S_contig14598:388..2723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14598.3526.1mRNA_Ecto-sp13_S_contig14598.3526.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14598 366..3717 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14598.3526.1 ID=prot_Ecto-sp13_S_contig14598.3526.1|Name=mRNA_Ecto-sp13_S_contig14598.3526.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MIMSLGTSSLVIGHANTTQLVILGIALGITLYNAIVLEPSAVEALEEEQA
VENKLRGPNKQKIAAQVGLLKFWLTCLGDRDRLSWTCSLVAVQCSDWSLD
ACVRRGTKMHSGGKTTFREIYPHPQHEVMRRA*
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