mRNA_Ecto-sp13_S_contig14597.3525.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE) HSP 1 Score: 515 bits (1326), Expect = 3.340e-183 Identity = 247/263 (93.92%), Postives = 252/263 (95.82%), Query Frame = 1
Query: 1 QGVDLLDGLTDVDVRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEEKLGMRVDGVLP 789
+GVDLLDGLT+VDVRLEVLDLGSL SVIAFAQ FKASGTKVDVLVNNAG+FGVPNRRETADGLEMHIGVNHFGGHLLTRLMEP I DGGRVLFLSSL HSRPPGMPKTTWDWDN+NFDKPKTYDRLSAYCRSKLANIWDAKEFAK LAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGY ALGWVWLKGPLDGALTTIRCAVDP LAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLE+KLG RVD V P
Sbjct: 77 EGVDLLDGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGPLDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDVFP 339
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI) HSP 1 Score: 519 bits (1336), Expect = 1.850e-182 Identity = 247/263 (93.92%), Postives = 256/263 (97.34%), Query Frame = 1
Query: 1 QGVDLLDGLTDVDVRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEEKLGMRVDGVLP 789
+GVDLLDGLT+VDVRLEVLDLGSL SV+AFAQRFKASGTKVDVLVNNAG+FGVPNRRETADGLEM IGVNHFGGHLLTRLMEP + DGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAK LAARSINTYAVQPGLVKTEIHRGIGGGKL+MPIVNAGYVALGWVWLKGPLDGALTT+RCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWE+TESVLEEKLG RVD V+P
Sbjct: 224 EGVDLLDGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGPLDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVVP 486
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI) HSP 1 Score: 381 bits (978), Expect = 2.950e-130 Identity = 190/262 (72.52%), Postives = 210/262 (80.15%), Query Frame = 1
Query: 1 QGVDLLDGLTDVDVRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEEKLGMRVDGVL 786
+GVDLL+GLTDVDVRLEVLDLGSL SVIAFAQRFKASGTKVDVL+NNAG+ +P RRET DGLEM IGVNHFGGHLLTRLMEPL+ DGGRV+FLSSL H +PPG K T D+DNVN++KP TY+ AY RSKLANI DAKEFAK L AR I+TYA PG+V TE+ R + L+ + L L PL GALTTIRCAVDPSLAGPE SGKYWGNMKEETPSELALDPANPPRLWE+TESVLE KLG VD +L
Sbjct: 75 EGVDLLEGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMAYGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRL-TAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI) HSP 1 Score: 247 bits (631), Expect = 1.680e-79 Identity = 121/212 (57.08%), Postives = 147/212 (69.34%), Query Frame = 1
Query: 151 FGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEEKLGMRVDGVL 786
+P T DGLE IGVNHFG HLLTRLME I DGGRV+FLSS+AH WDWDNVN+ KP Y + AY RSKLAN+ DAK FA HL+ R INTYA+ PG+V T++ R + G+LI + +LG L PL G+LTT+RCA+DP+LAGPE SGKYW +MK+ PS LA DPANPPRLWEITE +LE KLG +++ +L
Sbjct: 1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKH------GGWDWDNVNYTKPNKYVPMIAYGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAK-SLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLL 205
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE) HSP 1 Score: 198 bits (503), Expect = 3.800e-60 Identity = 99/175 (56.57%), Postives = 126/175 (72.00%), Query Frame = 1
Query: 4 GVDLLDGLTDVDVRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLI 528
GVDLL+GL+DVDV++EVLDLG L SV++FAQR K+SG K+DVL++NAG+ +P + + DGLE IGVNHF HLL+RLM I DGGRV+F SS+AH DWDNVN+ KP + + AY RSKLAN+ DAK FA HL+ R INTYA+ PG+V T++ R G+LI
Sbjct: 29 GVDLLEGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKH------GGCDWDNVNYTKPNEHGPMIAYGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLI 197
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH) HSP 1 Score: 165 bits (417), Expect = 1.090e-45 Identity = 97/255 (38.04%), Postives = 146/255 (57.25%), Query Frame = 1
Query: 10 DLLDGLTDVDVRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIK--DGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGG--KLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEEKL 762
++++ + DV ++ LDL S S+ FA++F + T++D+L+NNAGV P + T DGLEM IG NHFG LLT L+ +K R++ LSS+AH+ + WD++N DK Y +AY +SKLANI E + L + +V PG V T++ R G KL+ P+ ++ K P+DGA TT+ CA+ P L E+SGKY+ + KE+ PS A+ RLWE+TE ++++KL
Sbjct: 56 EIVEETKNEDVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMACP-KTLTKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAHAF------ASIKWDDINSDKK--YGDWAAYGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRHTNRGIFKLLKPLSK--------LFFKTPVDGAQTTLYCALSPDLE--EVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKL 291
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: A0A3S0Z7Y7_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z7Y7_ELYCH) HSP 1 Score: 161 bits (407), Expect = 6.210e-44 Identity = 94/237 (39.66%), Postives = 139/237 (58.65%), Query Frame = 1
Query: 55 LDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDG--GRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEEK 759
LDL S S+ AF F + ++D+L+NNAGV P R T DGLEM +G NHFG LLT L+ +K R++ +SS AH+R G+ ++D++N +K +Y++++AY +SKLANI KE + L + YA+ PG+V TE+ R I PI+ L ++ LK PL+GA TT+ CA++P A +SGKY+ + KE+ PS A D RLW+++ + E K
Sbjct: 123 LDLSSFESIRAFCDEFNRTEARLDILINNAGVMMCP-RMLTKDGLEMQLGTNHFGHFLLTNLLLDKLKASRPSRIVAVSSRAHTRTQGI-----NFDDINSEK--SYEKMTAYSQSKLANILHVKELTRRLEGTGVTAYALHPGVVATELPRHIALAN--NPIILFLTAPLRYILLKTPLEGAQTTLACALNP--AWETISGKYYSDCKEKEPSLPAQDAEAAKRLWDVSVEITEGK 347
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: A0A433T4Q0_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433T4Q0_ELYCH) HSP 1 Score: 152 bits (384), Expect = 1.210e-40 Identity = 95/235 (40.43%), Postives = 135/235 (57.45%), Query Frame = 1
Query: 55 LDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGG--RVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGG--KLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESV 747
LDL S S+ FA +F + ++DVL+NNAG+ P+ T DGLEM IGVNHFG LLT L+ +K R++ +SSLAH +++++N +K +Y R+SAYC+SKLANI A E K L + ++ PG V TE+ R + G K+++ + A +V K P GA T+IR AVDPSL +SGKY+ + K+ S ALD RLWE++E +
Sbjct: 121 LDLSSFESIREFANKFNDNEPRLDVLINNAGIMLCPHML-TKDGLEMQIGVNHFGHFLLTNLLMDKLKSSSPSRIVIVSSLAHRA------GVINFEDLNSEK--SYGRVSAYCQSKLANILHALELTKRLEGTGVTANSLHPGAVDTELGRYLVTGLPKVMLASILAPFV-------KSPAQGAQTSIRLAVDPSLE--TVSGKYFSDCKDTKTSAAALDENVAKRLWEVSEKI 337
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: A0A6P8HMP7_ACTTE (retinol dehydrogenase 11-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HMP7_ACTTE) HSP 1 Score: 149 bits (377), Expect = 7.300e-40 Identity = 91/235 (38.72%), Postives = 133/235 (56.60%), Query Frame = 1
Query: 40 VRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGG--RVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEIT 738
V LE LDL SL SV FA++ K + ++D+L+NNAGV P T DG E+ IGVNH G LLT L+ L+K RV+ LSSL H+ + + + N+N +K TY ++ AY +SKLANI KE A+ L + TYAV PG V+TE+ R I+ A + + W+ K P+ GA T++ CAV L G ++G+Y+ + E SE + + + LW+++
Sbjct: 91 VYLEKLDLASLKSVREFAEKIKKNEPRLDILINNAGVMMCPYMT-TEDGFELQIGVNHLGHFLLTNLLLDLLKKSAPSRVINLSSLGHTM-----TSRFKFQNMNNEK--TYGKVEAYAQSKLANILFTKELARRLEGTGVTTYAVHPGTVETELDRHTFFSSSIL---GAPFRPIRWLTCKTPIQGAQTSLYCAVSEDLEG--VTGRYYADCAETPSSEASKNEEDAKTLWDVS 312
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Match: UPI001BB29B72 (retinol dehydrogenase 13-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB29B72) HSP 1 Score: 147 bits (372), Expect = 5.420e-39 Identity = 93/233 (39.91%), Postives = 129/233 (55.36%), Query Frame = 1
Query: 55 LDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPLIKDGG--RVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKHLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYVALGWVWLKGPLDGALTTIRCAVDPSLAGPELSGKYWGNMKEETPSELA--LDPANPPRLWEITE 741
LDL SL SV AF F ++D+LVNNAGVF P + T DG EM GVNH G LLT + ++K RV+ +SS H R D+ +N D+ K Y++ +Y SKLAN+ KE ++ L+ + + +Y + PG++ TE+ R +G K A L W+++K P GA TTI CAV L E+SGKY+GN KEE E+ D A +LWE++E
Sbjct: 105 LDLASLKSVNAFCDEFCNKIGRLDILVNNAGVFYTPYMK-TEDGFEMQFGVNHLGHFLLTNRLLNVLKASSPSRVIIVSSALHKR------GHLDFSKLNPDE-KEYNKAKSYADSKLANVLFGKELSRRLSGQGVTSYTLHPGVINTELSRYLGYSKAFW----AATFPLRWLFMKSPWYGAQTTIYCAVAEELK--EVSGKYYGNCKEEPYPEVRGPADDAVATKLWEVSE 323 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14597.3525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14597.3525.1 >prot_Ecto-sp13_S_contig14597.3525.1 ID=prot_Ecto-sp13_S_contig14597.3525.1|Name=mRNA_Ecto-sp13_S_contig14597.3525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=264bp QGVDLLDGLTDVDVRLEVLDLGSLHSVIAFAQRFKASGTKVDVLVNNAGVback to top mRNA from alignment at Ecto-sp13_S_contig14597:3407..4198- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14597.3525.1 ID=mRNA_Ecto-sp13_S_contig14597.3525.1|Name=mRNA_Ecto-sp13_S_contig14597.3525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14597:3407..4198- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14597:3407..4198- >mRNA_Ecto-sp13_S_contig14597.3525.1 ID=mRNA_Ecto-sp13_S_contig14597.3525.1|Name=mRNA_Ecto-sp13_S_contig14597.3525.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14597:3407..4198- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |