|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig14587.3517.1 vs. uniprot
Match: D7FKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD6_ECTSI) HSP 1 Score: 686 bits (1770), Expect = 2.110e-243 Identity = 357/393 (90.84%), Postives = 363/393 (92.37%), Query Frame = 1
Query: 1 GRFGKGPATRAGGLASTMPVQGTLGQRPKPFFATALMLSRSDDSPASEGGSPFEGWGAGKSRRGTGRTDSIFTQGPNDPGVEAVIQAKVTTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWVSSDSERGGGGAADHTRAGKRDGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAASAAPVVPDKLARHSVIGKRASGRLPSGDTTGMNARRADAGEEETGLLARARVVLVHLSEVLRDEGEEVYFAAFEAHDYGNYRCLDEDGFVDAIGTLAPEVTAEQVHDVFLVRSRIEASDDKANYDELFKDLRKLAQIGGFLSGDAVELRVESRGGRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA 1179
GRFGK P TRAGGLA TMPVQGTLGQRPKPFFATALMLSRSDD PASE GSPF+GWGAGKSRRGTGRTDSIFTQGPNDPGVEA IQ KV+TLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAW SSDSERGGGGA TRAGKR+GPSQAAELTHADRKVLYRRW VRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAA+AAPVV D ARH V KRASG L SGD GM+AR ADAGEEETGLL R+RVVLVHLSEVLRDEGEE YFAAFEA DYGNYRCLDEDGFVDAI TLAPEVTAEQVHDVFLVRSRIE SDDKANYDELFKDLRKLAQIGGF SGDAVELRVESRG RVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA
Sbjct: 241 GRFGKCPTTRAGGLACTMPVQGTLGQRPKPFFATALMLSRSDDPPASERGSPFDGWGAGKSRRGTGRTDSIFTQGPNDPGVEAPIQEKVSTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWASSDSERGGGGAG--TRAGKREGPSQAAELTHADRKVLYRRWVVRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAAAAAPVVTDAPARHPVTRKRASGSLLSGDKAGMHARNADAGEEETGLLERSRVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVDAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKDLRKLAQIGGFQSGDAVELRVESRGSRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA 631
BLAST of mRNA_Ecto-sp13_S_contig14587.3517.1 vs. uniprot
Match: A0A6H5JE59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE59_9PHAE) HSP 1 Score: 594 bits (1532), Expect = 4.820e-211 Identity = 314/375 (83.73%), Postives = 324/375 (86.40%), Query Frame = 1
Query: 109 MLSRSDDSPASEGGSPFEGWGAGKSRRGTGRTDSIFTQGPNDPGVEAVIQAKVTTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWVSSDSERGGGGAADHTRAGKRDGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAASAAPVVPDKLARHSVIGKRASGRLPSGDTTGMNARRADAGEEETGLLARARVVLVHLSEVLRDEGEEVYFAAFEAHDYGNYRCLDEDGFVDAIGTLAPEVTAEQVHDVFLVRSRIEASDDKANYDELFK------------------DLRKLAQIGGFLSGDAVELRVESRGGRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA 1179
MLSRSDDSPASEGGSPF+GWGAGK+RRGTGRTDSIFTQG NDPGVEA +Q K+ TLISRRGPELEALLLLRDPERSG+I VK FSECLRAWVSSDSE GGGG TR GKR+GPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASG FNAPLPRYSEISTAVAAAP VV DK ARH V GKRASGRLPSGD GM+AR ADAGEEET L ARARVVLVHLSEVLRDEGEE YFAAFEA DYGNYRCLDEDGFV+AI TLAPEVTAEQVHDVFLVRSRIE SDDKANYDELFK DLRKLAQIGGF SGDAVELRVESRGGRVDWVPAQVVSRDGDGT+TVRF+SPTKVPGA
Sbjct: 1 MLSRSDDSPASEGGSPFDGWGAGKNRRGTGRTDSIFTQGRNDPGVEAAVQEKLATLISRRGPELEALLLLRDPERSGSISVKTFSECLRAWVSSDSEHGGGGTG--TRGGKREGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGCFNAPLPRYSEISTAVAAAPXXXXXXVVADKPARHPVTGKRASGRLPSGDKAGMHARNADAGEEETDLFARARVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVNAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKLGCAFPYPSPRPSITARKDLRKLAQIGGFQSGDAVELRVESRGGRVDWVPAQVVSRDGDGTFTVRFRSPTKVPGA 373
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 0 |
| Model size | 1179 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 1179 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462778.6143775-CDS-Ecto-sp13_S_contig14587:14..92 | 1681462778.6143775-CDS-Ecto-sp13_S_contig14587:14..92 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 15..92 + |
| 1681462778.6253421-CDS-Ecto-sp13_S_contig14587:546..691 | 1681462778.6253421-CDS-Ecto-sp13_S_contig14587:546..691 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 547..691 + |
| 1681462778.6350572-CDS-Ecto-sp13_S_contig14587:1140..1715 | 1681462778.6350572-CDS-Ecto-sp13_S_contig14587:1140..1715 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 1141..1715 + |
| 1681462778.6448402-CDS-Ecto-sp13_S_contig14587:2014..2132 | 1681462778.6448402-CDS-Ecto-sp13_S_contig14587:2014..2132 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 2015..2132 + |
| 1681462778.6542408-CDS-Ecto-sp13_S_contig14587:2562..2654 | 1681462778.6542408-CDS-Ecto-sp13_S_contig14587:2562..2654 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 2563..2654 + |
| 1681462778.6641572-CDS-Ecto-sp13_S_contig14587:3361..3463 | 1681462778.6641572-CDS-Ecto-sp13_S_contig14587:3361..3463 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 3362..3463 + |
| 1681462778.672404-CDS-Ecto-sp13_S_contig14587:4311..4380 | 1681462778.672404-CDS-Ecto-sp13_S_contig14587:4311..4380 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14587 4312..4380 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14587.3517.1 >prot_Ecto-sp13_S_contig14587.3517.1 ID=prot_Ecto-sp13_S_contig14587.3517.1|Name=mRNA_Ecto-sp13_S_contig14587.3517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp
GRFGKGPATRAGGLASTMPVQGTLGQRPKPFFATALMLSRSDDSPASEGG SPFEGWGAGKSRRGTGRTDSIFTQGPNDPGVEAVIQAKVTTLISRRGPEL EALLLLRDPERSGNIPVKAFSECLRAWVSSDSERGGGGAADHTRAGKRDG PSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGYFNAPLPRYSEISTA VAAAPAASAAPVVPDKLARHSVIGKRASGRLPSGDTTGMNARRADAGEEE TGLLARARVVLVHLSEVLRDEGEEVYFAAFEAHDYGNYRCLDEDGFVDAI GTLAPEVTAEQVHDVFLVRSRIEASDDKANYDELFKDLRKLAQIGGFLSG DAVELRVESRGGRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA back to topmRNA from alignment at Ecto-sp13_S_contig14587:15..4380+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig14587.3517.1 ID=mRNA_Ecto-sp13_S_contig14587.3517.1|Name=mRNA_Ecto-sp13_S_contig14587.3517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14587:15..4380+ (Ectocarpus species13 EcNAP12_S_4_19m) GGGAGATTCGGCAAAGGTCCCGCCACGAGAGCGGGTGGGCTAGCATCCAC
GATGCCTGTGCAGGGTACATTGGGACAGGTGTGTGGCAATAAAAAGCAGT
GCCGCCTTCGCTCTGACTCGCGGCTGAATCTCATGGTGCCGCAACTGTAC
ACCAGTCCCGGTGTCGAAATGGGGTGGCCGCACTCGCCTCGTTCTCATCC
CTTGGGGAACAACGGTGTGCTTCTGTTTTTTGGTGAGATGCGGTAGCTGC
GGACAATACACGACAAAGCTTTCTGATAGGCGGGCGTCGACGACGTGGGA
AATTATCGTCGAAGATCCATCGCCACATACAGCTGGTGCTGCAGACGGTT
TATCATGTGCTCGACAAATTCCGCAGCCATCCATGTTTCGGACTGACCGG
TTTGTTCGTTTCTTCGCCGCCCTTGTTCTTCACCCCCCCCGCGTGCCCGA
ACGCTGATCCCCCGCACGAACCAACGGACAACTTACCGAACACAACCAAC
ACCAACATCGACCACACGGGGCGTCTTCCAAGCGCCCAAAACCGTTCTTC
GCGACGGCTCTAATGCTGTCCCGATCGGACGACTCGCCTGCGTCGGAGGG
AGGCTCGCCTTTCGAAGGGTGGGGGGCGGGCAAAAGCCGTCGGGGCACAG
GCAGAACAGACTCCATCTTTACTCAAGGTACCCAAATCTCGACTGCTGAG
GCCCTCGCTCAACGAGAACGGAGTTATTTGTCTTGCTTGCTTAATTAAGA
CAGCTATGGAACAGCGGGATTCGCCAACCAACACGGTACGGAAAGTGACT
ACCGGAATACCTCGGTGTGGGAGAAGGGTAGAAATGTGGTGTGGGCCCCA
AACCTTGATTGTTACCATCAGCTTCACGCGTGGTTTGCTACAATGGAACG
GGTCCACTGAATGGCTATGGGTGTGGCAAAACTAGTAGTCGAAGTCGACA
ACGTGTCGGTCTGTACACCTGAATCAATAGCTTGCGGGGAAATTGAATAT
TTATGAGCACAGAAAACCGTACCTACTGCAACACAGGCCGGAAAGTCTTG
GTGGCCAACAACGGCCAACCACCTTTACCCCTGAAGCTTGCAACCCCCCA
CGCCTTCGACGACGACCGTTCCGTAGGCCCAAATGACCCAGGAGTTGAAG
CGGTTATCCAAGCGAAAGTTACGACTCTCATCTCCAGACGAGGCCCTGAG
CTTGAAGCCCTGCTGCTCTTACGGGACCCAGAACGTTCCGGGAACATCCC
GGTGAAGGCATTCTCGGAGTGCCTACGGGCGTGGGTTTCGAGCGACAGCG
AACGTGGCGGTGGCGGTGCCGCCGACCACACGCGGGCGGGCAAGCGTGAC
GGACCAAGCCAGGCGGCAGAGTTAACTCATGCCGACCGCAAGGTTTTGTA
CAGACGGTGGGCGGTGCGGGGACAGGTGAGGTACGTCGACTTCCTGGGCG
CGAGCGGGTATTTCAACGCCCCGCTGCCCCGCTACTCCGAGATCAGCACG
GCGGTCGCTGCCGCACCCGCTGCGTCTGCCGCTCCGGTGGTCCCCGACAA
GCTTGCACGGCACTCTGTCATCGGGAAACGGGCTTCCGGAAGGCTGCCGT
CCGGGGACACGACGGGCATGAATGCGAGGAGAGCTGATGCGGGGGAGGAG
GAGACGGGTCTCCTCGCAAGGGCGAGAGTCGTACTCGTACATCTATCGGA
GGTTTGATATCTGCGCGTGCTTTTTCCAAACCAGGGCTTGGGTGGATGAT
AAATTTCCCATAGCCTATATTATTGATGATCTCGGTACACCGTCCAAAGC
AGCAGCAGCAGCAGCAGCAGCGATGCCAACGGGATTTCTTGCGCGTTTCT
TATCCTAACCTCTTTCTTAAGTGGCCCAGACGGTATCGGACACAGGTCGG
ACCGGTTGTAAAGCTTTACGGAAACAGTCACAAGCTGCAGGTGCGAATGA
ACCGATGTCATGCGCTTTCCATGGACCGGCGCGTGTGGAACATACCGCAG
GTTTTGCGGGACGAAGGGGAGGAAGTATACTTTGCCGCATTCGAGGCGCA
CGACTACGGCAACTACCGGTGTCTAGATGAGGACGGCTTCGTAGATGCCA
TCGGAACCCTTGCTCCAGGTAATCATTGCCCGTCGATCTCCATGGCGCAG
CCGTACATACACTCTTTCCCTGCCGGCTTCAAACGTTGTGCCGTTGGAGG
CGGCATGTTGCCTGTGTGTTGTTCACAGATATTATGTTGCTGTAGCATCT
GCGTCGCGGTGGGGGGTAACATATTGCATTTCTGTCGAGAGGAGAGCACC
AGCACTGCTCCACACATCACGAGTCTGCGATTCTGAGTACGATCATCTCG
AGCAAAGTCTACTTCGATCATTCCCATCATGTTCCTCCCGGCGGGAGCTG
GGCGTAAACGAGCAGTGGGCTGATTCTAGGACATCTCCGTGCCCTTATCC
ACCGCCTGTCGGACCCCTGTTTGACAATTTTTTCTTCGCTCTCCGTGCTG
TCGATGCCGCGCAATCGAAAATTGGGCGCGGCCTTCGCGTACGCTTAGAG
GTGACGGCGGAGCAAGTGCACGACGTTTTCCTTGTGAGATCACGAATAGA
AGCAAGCGATGACAAGGCAAACTACGACGAGCTATTTAAGGTACATAAAC
ACAAGAAGGGACCGAAAGAGGAAGGAGGCTTGGCCTCTAGTCTAAGGATA
GAAATTGTGAGGGTGAAGGTGCACTTGGACTCTAAGGGTACCAAAAGGAC
GTTCCTGCCCTGGTCGGGAGAAACCTTCCGCCACAAAGGTATTTTCCACA
CCGAAGGTGGGAATGGTGGAGACTCAGCGTCGAGGGATAGCGGACAAAGT
AACTAAGAGAAACGAGGACTCGCTTGTGAGCCATGTAGGGCGAGGATTAA
CGACACCAGCACGAAGGTCAAGGATGGGCACAACCACGTGAAGAGAAAAC
GCAAAAGGGAGAAGGTTCGAACGGCGCTGGGACAGGGGCTCACACAAGCA
CACAAGCGGATAACGAAAGAAGAATAAGGTTATGCACCCGACCTAGTGGG
ACTGGCTTTTGAAGGGGCGTTTTGAGATGCGTAAATGGTGGCAGAGGCAC
GCTCGTCCTTGTTGGTGCGGGGAATCGTAGGTTATTACAATAATCTCTTC
GGGAGGGCACAAGTCATACCTTTTTCCATCTCCTGCCACTGGCGTCATCG
TGACTACGGCTCGCCCAAACATCATGCTAATGTACGCTTTCAACGCTCGT
ATCCACAAGACGGTGCACCATTCGTCGACTCCGCACAAGATAACTTGGTT
GCGTTTCCGCATGCCCCCCACCACGGCTATCCATTGGCGCCCACAAGGAC
TTGCGAAAGCTGGCTCAGATCGGAGGTTTCCTGTCGGGGGATGCTGTGGA
ACTCCGAGTTGAATCGCGGGGGGGTCGCGTGGACTGGGTCCCTGCCCAGG
TGAAGACGAGTTGATTCAGCCAGATCGGTAACCCTTGCTACGGGACTCTA
TTGATTCCAGCCGTGTGCGTTCAAACACCGACGAGACAAGCCAGCTCCTT
TCGAAGACAGCCACCATCAGAAATAGCAGAGAGAAGAGAACGGAAAACCA
TTGTCACTCGGAAATAGTGGTAAATGGAAATTTTACAAACAGGCGGTCGA
CAGTCTCGTCGTTGGCGTCGCCCCTCATCCGAGCCAAAAACGGTTCAGGC
TCACCCCCGCGACTGCTGTGACCGTCACACACCATGCATCACTGCTACGT
GGGTATGGGTGTTCCAGAGCGGAATAGTTCCCTATTGAACTCGTGATCTC
CAGATTGCTAGATCCGACGTGCGGAAGAGCCGAAGTGATACCTTCAATAT
CCTCGAAATCGCCCTACAACTGTTGAGTGGGCGAGATACATCGGAGAGAG
GTGTTCATCCAGAGAAGGGTATTCAAATCGTTCGAAGCGCGTGTCTAGGG
CGTCCATGCAGCGATCGTGGGGTTATTCTGTTCAGCCCCTCACAGGAAAC
TCCTCAAGAAGAATCGATTTCACGACCATCGGATCACCACACCAGCGGCA
CACGCCAACCTCAGTCGTACCTCCATTCCATTACCCTCCCTGTTTTCCCT
TTGCTCTGATTTAAGTGTAAGGCTCTTACCGATACTGAAAACAAGGTTAG
ACGAAATCAAGATCGAAACACCGCTAGTACTGTAGCCTCCGGGATGAGAG
CCTCTTTGATACAGAAGACGAAAGCGTTGAGTGTTGCATAGCACTAACAT
TGAACCGCCTCACTCGTGCGTGTTTCGGCGGGCACGTTTCACACCAGGTG
GTGTCAAGAGACGGGGATGGCACCTACACCGTTCGATTCAAGTCTCCGAC
AAAGGTCCCAGGCGCA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig14587:15..4380+ >mRNA_Ecto-sp13_S_contig14587.3517.1 ID=mRNA_Ecto-sp13_S_contig14587.3517.1|Name=mRNA_Ecto-sp13_S_contig14587.3517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14587:15..4380+ (Ectocarpus species13 EcNAP12_S_4_19m) GGGAGATTCGGCAAAGGTCCCGCCACGAGAGCGGGTGGGCTAGCATCCAC GATGCCTGTGCAGGGTACATTGGGACAGCGCCCAAAACCGTTCTTCGCGA CGGCTCTAATGCTGTCCCGATCGGACGACTCGCCTGCGTCGGAGGGAGGC TCGCCTTTCGAAGGGTGGGGGGCGGGCAAAAGCCGTCGGGGCACAGGCAG AACAGACTCCATCTTTACTCAAGGCCCAAATGACCCAGGAGTTGAAGCGG TTATCCAAGCGAAAGTTACGACTCTCATCTCCAGACGAGGCCCTGAGCTT GAAGCCCTGCTGCTCTTACGGGACCCAGAACGTTCCGGGAACATCCCGGT GAAGGCATTCTCGGAGTGCCTACGGGCGTGGGTTTCGAGCGACAGCGAAC GTGGCGGTGGCGGTGCCGCCGACCACACGCGGGCGGGCAAGCGTGACGGA CCAAGCCAGGCGGCAGAGTTAACTCATGCCGACCGCAAGGTTTTGTACAG ACGGTGGGCGGTGCGGGGACAGGTGAGGTACGTCGACTTCCTGGGCGCGA GCGGGTATTTCAACGCCCCGCTGCCCCGCTACTCCGAGATCAGCACGGCG GTCGCTGCCGCACCCGCTGCGTCTGCCGCTCCGGTGGTCCCCGACAAGCT TGCACGGCACTCTGTCATCGGGAAACGGGCTTCCGGAAGGCTGCCGTCCG GGGACACGACGGGCATGAATGCGAGGAGAGCTGATGCGGGGGAGGAGGAG ACGGGTCTCCTCGCAAGGGCGAGAGTCGTACTCGTACATCTATCGGAGGT TTTGCGGGACGAAGGGGAGGAAGTATACTTTGCCGCATTCGAGGCGCACG ACTACGGCAACTACCGGTGTCTAGATGAGGACGGCTTCGTAGATGCCATC GGAACCCTTGCTCCAGAGGTGACGGCGGAGCAAGTGCACGACGTTTTCCT TGTGAGATCACGAATAGAAGCAAGCGATGACAAGGCAAACTACGACGAGC TATTTAAGGACTTGCGAAAGCTGGCTCAGATCGGAGGTTTCCTGTCGGGG GATGCTGTGGAACTCCGAGTTGAATCGCGGGGGGGTCGCGTGGACTGGGT CCCTGCCCAGGTGGTGTCAAGAGACGGGGATGGCACCTACACCGTTCGAT TCAAGTCTCCGACAAAGGTCCCAGGCGCA back to top
|