mRNA_Ecto-sp13_S_contig14587.3517.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14587.3517.1
Unique NamemRNA_Ecto-sp13_S_contig14587.3517.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14587.3517.1 vs. uniprot
Match: D7FKD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD6_ECTSI)

HSP 1 Score: 686 bits (1770), Expect = 2.110e-243
Identity = 357/393 (90.84%), Postives = 363/393 (92.37%), Query Frame = 1
Query:    1 GRFGKGPATRAGGLASTMPVQGTLGQRPKPFFATALMLSRSDDSPASEGGSPFEGWGAGKSRRGTGRTDSIFTQGPNDPGVEAVIQAKVTTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWVSSDSERGGGGAADHTRAGKRDGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAASAAPVVPDKLARHSVIGKRASGRLPSGDTTGMNARRADAGEEETGLLARARVVLVHLSEVLRDEGEEVYFAAFEAHDYGNYRCLDEDGFVDAIGTLAPEVTAEQVHDVFLVRSRIEASDDKANYDELFKDLRKLAQIGGFLSGDAVELRVESRGGRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA 1179
            GRFGK P TRAGGLA TMPVQGTLGQRPKPFFATALMLSRSDD PASE GSPF+GWGAGKSRRGTGRTDSIFTQGPNDPGVEA IQ KV+TLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAW SSDSERGGGGA   TRAGKR+GPSQAAELTHADRKVLYRRW VRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAA+AAPVV D  ARH V  KRASG L SGD  GM+AR ADAGEEETGLL R+RVVLVHLSEVLRDEGEE YFAAFEA DYGNYRCLDEDGFVDAI TLAPEVTAEQVHDVFLVRSRIE SDDKANYDELFKDLRKLAQIGGF SGDAVELRVESRG RVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA
Sbjct:  241 GRFGKCPTTRAGGLACTMPVQGTLGQRPKPFFATALMLSRSDDPPASERGSPFDGWGAGKSRRGTGRTDSIFTQGPNDPGVEAPIQEKVSTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWASSDSERGGGGAG--TRAGKREGPSQAAELTHADRKVLYRRWVVRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAAAAAPVVTDAPARHPVTRKRASGSLLSGDKAGMHARNADAGEEETGLLERSRVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVDAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKDLRKLAQIGGFQSGDAVELRVESRGSRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA 631          
BLAST of mRNA_Ecto-sp13_S_contig14587.3517.1 vs. uniprot
Match: A0A6H5JE59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE59_9PHAE)

HSP 1 Score: 594 bits (1532), Expect = 4.820e-211
Identity = 314/375 (83.73%), Postives = 324/375 (86.40%), Query Frame = 1
Query:  109 MLSRSDDSPASEGGSPFEGWGAGKSRRGTGRTDSIFTQGPNDPGVEAVIQAKVTTLISRRGPELEALLLLRDPERSGNIPVKAFSECLRAWVSSDSERGGGGAADHTRAGKRDGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGYFNAPLPRYSEISTAVAAAPAASAAPVVPDKLARHSVIGKRASGRLPSGDTTGMNARRADAGEEETGLLARARVVLVHLSEVLRDEGEEVYFAAFEAHDYGNYRCLDEDGFVDAIGTLAPEVTAEQVHDVFLVRSRIEASDDKANYDELFK------------------DLRKLAQIGGFLSGDAVELRVESRGGRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA 1179
            MLSRSDDSPASEGGSPF+GWGAGK+RRGTGRTDSIFTQG NDPGVEA +Q K+ TLISRRGPELEALLLLRDPERSG+I VK FSECLRAWVSSDSE GGGG    TR GKR+GPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASG FNAPLPRYSEISTAVAAAP      VV DK ARH V GKRASGRLPSGD  GM+AR ADAGEEET L ARARVVLVHLSEVLRDEGEE YFAAFEA DYGNYRCLDEDGFV+AI TLAPEVTAEQVHDVFLVRSRIE SDDKANYDELFK                  DLRKLAQIGGF SGDAVELRVESRGGRVDWVPAQVVSRDGDGT+TVRF+SPTKVPGA
Sbjct:    1 MLSRSDDSPASEGGSPFDGWGAGKNRRGTGRTDSIFTQGRNDPGVEAAVQEKLATLISRRGPELEALLLLRDPERSGSISVKTFSECLRAWVSSDSEHGGGGTG--TRGGKREGPSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGCFNAPLPRYSEISTAVAAAPXXXXXXVVADKPARHPVTGKRASGRLPSGDKAGMHARNADAGEEETDLFARARVVLVHLSEVLRDEGEEAYFAAFEAQDYGNYRCLDEDGFVNAIETLAPEVTAEQVHDVFLVRSRIEGSDDKANYDELFKLGCAFPYPSPRPSITARKDLRKLAQIGGFQSGDAVELRVESRGGRVDWVPAQVVSRDGDGTFTVRFRSPTKVPGA 373          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14587.3517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKD6_ECTSI2.110e-24390.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE59_9PHAE4.820e-21183.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14587contigEcto-sp13_S_contig14587:15..4380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1179
Hectar predicted targeting categoryother localisation
Exons7
Cds size1179
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14587.3517.1prot_Ecto-sp13_S_contig14587.3517.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14587 15..4380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462778.6143775-CDS-Ecto-sp13_S_contig14587:14..921681462778.6143775-CDS-Ecto-sp13_S_contig14587:14..92Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 15..92 +
1681462778.6253421-CDS-Ecto-sp13_S_contig14587:546..6911681462778.6253421-CDS-Ecto-sp13_S_contig14587:546..691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 547..691 +
1681462778.6350572-CDS-Ecto-sp13_S_contig14587:1140..17151681462778.6350572-CDS-Ecto-sp13_S_contig14587:1140..1715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 1141..1715 +
1681462778.6448402-CDS-Ecto-sp13_S_contig14587:2014..21321681462778.6448402-CDS-Ecto-sp13_S_contig14587:2014..2132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 2015..2132 +
1681462778.6542408-CDS-Ecto-sp13_S_contig14587:2562..26541681462778.6542408-CDS-Ecto-sp13_S_contig14587:2562..2654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 2563..2654 +
1681462778.6641572-CDS-Ecto-sp13_S_contig14587:3361..34631681462778.6641572-CDS-Ecto-sp13_S_contig14587:3361..3463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 3362..3463 +
1681462778.672404-CDS-Ecto-sp13_S_contig14587:4311..43801681462778.672404-CDS-Ecto-sp13_S_contig14587:4311..4380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14587 4312..4380 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14587.3517.1

>prot_Ecto-sp13_S_contig14587.3517.1 ID=prot_Ecto-sp13_S_contig14587.3517.1|Name=mRNA_Ecto-sp13_S_contig14587.3517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp
GRFGKGPATRAGGLASTMPVQGTLGQRPKPFFATALMLSRSDDSPASEGG
SPFEGWGAGKSRRGTGRTDSIFTQGPNDPGVEAVIQAKVTTLISRRGPEL
EALLLLRDPERSGNIPVKAFSECLRAWVSSDSERGGGGAADHTRAGKRDG
PSQAAELTHADRKVLYRRWAVRGQVRYVDFLGASGYFNAPLPRYSEISTA
VAAAPAASAAPVVPDKLARHSVIGKRASGRLPSGDTTGMNARRADAGEEE
TGLLARARVVLVHLSEVLRDEGEEVYFAAFEAHDYGNYRCLDEDGFVDAI
GTLAPEVTAEQVHDVFLVRSRIEASDDKANYDELFKDLRKLAQIGGFLSG
DAVELRVESRGGRVDWVPAQVVSRDGDGTYTVRFKSPTKVPGA
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mRNA from alignment at Ecto-sp13_S_contig14587:15..4380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14587.3517.1 ID=mRNA_Ecto-sp13_S_contig14587.3517.1|Name=mRNA_Ecto-sp13_S_contig14587.3517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4366bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14587:15..4380+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGATTCGGCAAAGGTCCCGCCACGAGAGCGGGTGGGCTAGCATCCAC GATGCCTGTGCAGGGTACATTGGGACAGGTGTGTGGCAATAAAAAGCAGT GCCGCCTTCGCTCTGACTCGCGGCTGAATCTCATGGTGCCGCAACTGTAC ACCAGTCCCGGTGTCGAAATGGGGTGGCCGCACTCGCCTCGTTCTCATCC CTTGGGGAACAACGGTGTGCTTCTGTTTTTTGGTGAGATGCGGTAGCTGC GGACAATACACGACAAAGCTTTCTGATAGGCGGGCGTCGACGACGTGGGA AATTATCGTCGAAGATCCATCGCCACATACAGCTGGTGCTGCAGACGGTT TATCATGTGCTCGACAAATTCCGCAGCCATCCATGTTTCGGACTGACCGG TTTGTTCGTTTCTTCGCCGCCCTTGTTCTTCACCCCCCCCGCGTGCCCGA ACGCTGATCCCCCGCACGAACCAACGGACAACTTACCGAACACAACCAAC ACCAACATCGACCACACGGGGCGTCTTCCAAGCGCCCAAAACCGTTCTTC GCGACGGCTCTAATGCTGTCCCGATCGGACGACTCGCCTGCGTCGGAGGG AGGCTCGCCTTTCGAAGGGTGGGGGGCGGGCAAAAGCCGTCGGGGCACAG GCAGAACAGACTCCATCTTTACTCAAGGTACCCAAATCTCGACTGCTGAG GCCCTCGCTCAACGAGAACGGAGTTATTTGTCTTGCTTGCTTAATTAAGA CAGCTATGGAACAGCGGGATTCGCCAACCAACACGGTACGGAAAGTGACT ACCGGAATACCTCGGTGTGGGAGAAGGGTAGAAATGTGGTGTGGGCCCCA AACCTTGATTGTTACCATCAGCTTCACGCGTGGTTTGCTACAATGGAACG GGTCCACTGAATGGCTATGGGTGTGGCAAAACTAGTAGTCGAAGTCGACA ACGTGTCGGTCTGTACACCTGAATCAATAGCTTGCGGGGAAATTGAATAT TTATGAGCACAGAAAACCGTACCTACTGCAACACAGGCCGGAAAGTCTTG GTGGCCAACAACGGCCAACCACCTTTACCCCTGAAGCTTGCAACCCCCCA CGCCTTCGACGACGACCGTTCCGTAGGCCCAAATGACCCAGGAGTTGAAG CGGTTATCCAAGCGAAAGTTACGACTCTCATCTCCAGACGAGGCCCTGAG CTTGAAGCCCTGCTGCTCTTACGGGACCCAGAACGTTCCGGGAACATCCC GGTGAAGGCATTCTCGGAGTGCCTACGGGCGTGGGTTTCGAGCGACAGCG AACGTGGCGGTGGCGGTGCCGCCGACCACACGCGGGCGGGCAAGCGTGAC GGACCAAGCCAGGCGGCAGAGTTAACTCATGCCGACCGCAAGGTTTTGTA CAGACGGTGGGCGGTGCGGGGACAGGTGAGGTACGTCGACTTCCTGGGCG CGAGCGGGTATTTCAACGCCCCGCTGCCCCGCTACTCCGAGATCAGCACG GCGGTCGCTGCCGCACCCGCTGCGTCTGCCGCTCCGGTGGTCCCCGACAA GCTTGCACGGCACTCTGTCATCGGGAAACGGGCTTCCGGAAGGCTGCCGT CCGGGGACACGACGGGCATGAATGCGAGGAGAGCTGATGCGGGGGAGGAG GAGACGGGTCTCCTCGCAAGGGCGAGAGTCGTACTCGTACATCTATCGGA GGTTTGATATCTGCGCGTGCTTTTTCCAAACCAGGGCTTGGGTGGATGAT AAATTTCCCATAGCCTATATTATTGATGATCTCGGTACACCGTCCAAAGC AGCAGCAGCAGCAGCAGCAGCGATGCCAACGGGATTTCTTGCGCGTTTCT TATCCTAACCTCTTTCTTAAGTGGCCCAGACGGTATCGGACACAGGTCGG ACCGGTTGTAAAGCTTTACGGAAACAGTCACAAGCTGCAGGTGCGAATGA ACCGATGTCATGCGCTTTCCATGGACCGGCGCGTGTGGAACATACCGCAG GTTTTGCGGGACGAAGGGGAGGAAGTATACTTTGCCGCATTCGAGGCGCA CGACTACGGCAACTACCGGTGTCTAGATGAGGACGGCTTCGTAGATGCCA TCGGAACCCTTGCTCCAGGTAATCATTGCCCGTCGATCTCCATGGCGCAG CCGTACATACACTCTTTCCCTGCCGGCTTCAAACGTTGTGCCGTTGGAGG CGGCATGTTGCCTGTGTGTTGTTCACAGATATTATGTTGCTGTAGCATCT GCGTCGCGGTGGGGGGTAACATATTGCATTTCTGTCGAGAGGAGAGCACC AGCACTGCTCCACACATCACGAGTCTGCGATTCTGAGTACGATCATCTCG AGCAAAGTCTACTTCGATCATTCCCATCATGTTCCTCCCGGCGGGAGCTG GGCGTAAACGAGCAGTGGGCTGATTCTAGGACATCTCCGTGCCCTTATCC ACCGCCTGTCGGACCCCTGTTTGACAATTTTTTCTTCGCTCTCCGTGCTG TCGATGCCGCGCAATCGAAAATTGGGCGCGGCCTTCGCGTACGCTTAGAG GTGACGGCGGAGCAAGTGCACGACGTTTTCCTTGTGAGATCACGAATAGA AGCAAGCGATGACAAGGCAAACTACGACGAGCTATTTAAGGTACATAAAC ACAAGAAGGGACCGAAAGAGGAAGGAGGCTTGGCCTCTAGTCTAAGGATA GAAATTGTGAGGGTGAAGGTGCACTTGGACTCTAAGGGTACCAAAAGGAC GTTCCTGCCCTGGTCGGGAGAAACCTTCCGCCACAAAGGTATTTTCCACA CCGAAGGTGGGAATGGTGGAGACTCAGCGTCGAGGGATAGCGGACAAAGT AACTAAGAGAAACGAGGACTCGCTTGTGAGCCATGTAGGGCGAGGATTAA CGACACCAGCACGAAGGTCAAGGATGGGCACAACCACGTGAAGAGAAAAC GCAAAAGGGAGAAGGTTCGAACGGCGCTGGGACAGGGGCTCACACAAGCA CACAAGCGGATAACGAAAGAAGAATAAGGTTATGCACCCGACCTAGTGGG ACTGGCTTTTGAAGGGGCGTTTTGAGATGCGTAAATGGTGGCAGAGGCAC GCTCGTCCTTGTTGGTGCGGGGAATCGTAGGTTATTACAATAATCTCTTC GGGAGGGCACAAGTCATACCTTTTTCCATCTCCTGCCACTGGCGTCATCG TGACTACGGCTCGCCCAAACATCATGCTAATGTACGCTTTCAACGCTCGT ATCCACAAGACGGTGCACCATTCGTCGACTCCGCACAAGATAACTTGGTT GCGTTTCCGCATGCCCCCCACCACGGCTATCCATTGGCGCCCACAAGGAC TTGCGAAAGCTGGCTCAGATCGGAGGTTTCCTGTCGGGGGATGCTGTGGA ACTCCGAGTTGAATCGCGGGGGGGTCGCGTGGACTGGGTCCCTGCCCAGG TGAAGACGAGTTGATTCAGCCAGATCGGTAACCCTTGCTACGGGACTCTA TTGATTCCAGCCGTGTGCGTTCAAACACCGACGAGACAAGCCAGCTCCTT TCGAAGACAGCCACCATCAGAAATAGCAGAGAGAAGAGAACGGAAAACCA TTGTCACTCGGAAATAGTGGTAAATGGAAATTTTACAAACAGGCGGTCGA CAGTCTCGTCGTTGGCGTCGCCCCTCATCCGAGCCAAAAACGGTTCAGGC TCACCCCCGCGACTGCTGTGACCGTCACACACCATGCATCACTGCTACGT GGGTATGGGTGTTCCAGAGCGGAATAGTTCCCTATTGAACTCGTGATCTC CAGATTGCTAGATCCGACGTGCGGAAGAGCCGAAGTGATACCTTCAATAT CCTCGAAATCGCCCTACAACTGTTGAGTGGGCGAGATACATCGGAGAGAG GTGTTCATCCAGAGAAGGGTATTCAAATCGTTCGAAGCGCGTGTCTAGGG CGTCCATGCAGCGATCGTGGGGTTATTCTGTTCAGCCCCTCACAGGAAAC TCCTCAAGAAGAATCGATTTCACGACCATCGGATCACCACACCAGCGGCA CACGCCAACCTCAGTCGTACCTCCATTCCATTACCCTCCCTGTTTTCCCT TTGCTCTGATTTAAGTGTAAGGCTCTTACCGATACTGAAAACAAGGTTAG ACGAAATCAAGATCGAAACACCGCTAGTACTGTAGCCTCCGGGATGAGAG CCTCTTTGATACAGAAGACGAAAGCGTTGAGTGTTGCATAGCACTAACAT TGAACCGCCTCACTCGTGCGTGTTTCGGCGGGCACGTTTCACACCAGGTG GTGTCAAGAGACGGGGATGGCACCTACACCGTTCGATTCAAGTCTCCGAC AAAGGTCCCAGGCGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14587:15..4380+

>mRNA_Ecto-sp13_S_contig14587.3517.1 ID=mRNA_Ecto-sp13_S_contig14587.3517.1|Name=mRNA_Ecto-sp13_S_contig14587.3517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14587:15..4380+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGATTCGGCAAAGGTCCCGCCACGAGAGCGGGTGGGCTAGCATCCAC
GATGCCTGTGCAGGGTACATTGGGACAGCGCCCAAAACCGTTCTTCGCGA
CGGCTCTAATGCTGTCCCGATCGGACGACTCGCCTGCGTCGGAGGGAGGC
TCGCCTTTCGAAGGGTGGGGGGCGGGCAAAAGCCGTCGGGGCACAGGCAG
AACAGACTCCATCTTTACTCAAGGCCCAAATGACCCAGGAGTTGAAGCGG
TTATCCAAGCGAAAGTTACGACTCTCATCTCCAGACGAGGCCCTGAGCTT
GAAGCCCTGCTGCTCTTACGGGACCCAGAACGTTCCGGGAACATCCCGGT
GAAGGCATTCTCGGAGTGCCTACGGGCGTGGGTTTCGAGCGACAGCGAAC
GTGGCGGTGGCGGTGCCGCCGACCACACGCGGGCGGGCAAGCGTGACGGA
CCAAGCCAGGCGGCAGAGTTAACTCATGCCGACCGCAAGGTTTTGTACAG
ACGGTGGGCGGTGCGGGGACAGGTGAGGTACGTCGACTTCCTGGGCGCGA
GCGGGTATTTCAACGCCCCGCTGCCCCGCTACTCCGAGATCAGCACGGCG
GTCGCTGCCGCACCCGCTGCGTCTGCCGCTCCGGTGGTCCCCGACAAGCT
TGCACGGCACTCTGTCATCGGGAAACGGGCTTCCGGAAGGCTGCCGTCCG
GGGACACGACGGGCATGAATGCGAGGAGAGCTGATGCGGGGGAGGAGGAG
ACGGGTCTCCTCGCAAGGGCGAGAGTCGTACTCGTACATCTATCGGAGGT
TTTGCGGGACGAAGGGGAGGAAGTATACTTTGCCGCATTCGAGGCGCACG
ACTACGGCAACTACCGGTGTCTAGATGAGGACGGCTTCGTAGATGCCATC
GGAACCCTTGCTCCAGAGGTGACGGCGGAGCAAGTGCACGACGTTTTCCT
TGTGAGATCACGAATAGAAGCAAGCGATGACAAGGCAAACTACGACGAGC
TATTTAAGGACTTGCGAAAGCTGGCTCAGATCGGAGGTTTCCTGTCGGGG
GATGCTGTGGAACTCCGAGTTGAATCGCGGGGGGGTCGCGTGGACTGGGT
CCCTGCCCAGGTGGTGTCAAGAGACGGGGATGGCACCTACACCGTTCGAT
TCAAGTCTCCGACAAAGGTCCCAGGCGCA
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