mRNA_Ecto-sp13_S_contig1453.3484.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI) HSP 1 Score: 1303 bits (3372), Expect = 0.000e+0 Identity = 789/913 (86.42%), Postives = 809/913 (88.61%), Query Frame = 2
Query: 758 RSAFXXXXXXXXXXXASSAYGDGPXXXXXXXXXXXXXXXXXXXXXASAGWNDGPGYNMDDFELVEEGTGDDGTWDDYSDYSDDPGLYKKPRGADTAYVEDLGTELKVMTRGSGDGFSAAPAAKTVFSADPNLSPVSGEMGVGRSHNRERRAARXXXXXXXXXDSEKGRGEGGRLWSEDDGAADAXXXXXXEAARVRDGAQLRIKRREERERAERERQAKYFASLDGQGGDAVAGAGASDGGLDDIFGDYFSPKKSSTPPSSSTVAPQPKQRFAKNPSPAASTSGWDQLPPPASSSTSGGKLSERRNDYGSNLPINLSEREAEGDDGWESSGGGDYGGGRRQGRG--GRDGGYQDFSEPVSEGRFGRQAQQQQ-GKLGNGRGGDDFGLRGRGGGGRGSAAADYGGGRG-RVVDKSIWDADRWESTGSTAWINAGEGDGSAXXXXXXXXSLPSWKVPKAEQETAKANSAPVPDWLPRQGGLGSESRRGVAPLPEGIDTSVKKLGVKGLEAMLKDKFSKMKDGVFTAEDDEAEFYDPDDEGFERLVDGEQLPLVESEDDVVGSVDVGAAVQDFRGAVRYDDPNAPRPKGLGVVARSEAEAAGGGFRMRSPSRAXXXXXXXXXXXXXXGSTGGGRDASPAVDDYDKDGSSGNKSASRTKGGRGDDGGGSVGGDDIAFGRGVAEGEDVAVVSEDRKQEQDGVTGKVGKKDKTTKSQAVEKKPTYTAINIADMETLEQQASFSFHDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGG 3484
RSAF XXXXXXXXX ASSAY DGP XXXXXXXXXXXXXXXXXASAGWNDGPGYNMDDFELVEEGTGDDGTWDDYSDYSDDPGLYKKPRGADTAYVEDLGTELKVMTRG GDGFSAAPAAKTVFSADPNLSPVSGE+GVGRSHNRERRAAR XXXXXX EKGRGE GRLWSEDDGAADA XXXXXEAARVRDGAQLRI+RREERERAERERQA+YFAS+DGQGGDA GAGASDGGLDDIFGDYFSPKKSSTPPSSS VAPQPKQRFA+NPSPAA+TSGWDQLP TSG K ERR+DYGSNL N REAE DDGWES GDYG GR GRDGGYQD+SEPVSEGRFGRQAQQQQ G+ NGRGGDDFG RGRG RVVDKSIWDADRWESTGSTAWINAGEGDGSAXXXXXXXXSLPSWKVPKAEQETAKANSAPVPDWLPRQGGLGSESRRGVAPLPEGIDTSVKKLGVKGLEAMLKDKFSK KDGVF AEDDEAEFYDPDDEGFE+LVDGEQLPLVESEDDVVGSVDVGAAVQDFRGAVRYDDPNAPRPKGLGVVARSEAEAAGGGFRMRSPSRA XXXXXXX GSTGGGRDASPAVDDYD+DGSSGNKSASR+KG + IA AV+SE+RK+EQDGV K+GKKDK TKSQAVE+KPTYTAINIADMETLEQQASFSF DLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPD+NALQAVVVAPGRELASQIFSVCEKLIQGTGLRS+MVIGGANALRQVER KKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATP G
Sbjct: 106 RSAFGXXXXXXXXXGASSAYSDGPGRYSXXXXXXXXXXXXXXXXXASAGWNDGPGYNMDDFELVEEGTGDDGTWDDYSDYSDDPGLYKKPRGADTAYVEDLGTELKVMTRGGGDGFSAAPAAKTVFSADPNLSPVSGELGVGRSHNRERRAARREQXXXXXXXXEKGRGEEGRLWSEDDGAADAAXXXXXEAARVRDGAQLRIQRREERERAERERQAEYFASIDGQGGDA--GAGASDGGLDDIFGDYFSPKKSSTPPSSSAVAPQPKQRFAQNPSPAAATSGWDQLPXXXXXXTSGSKRPERRDDYGSNLRRNPL-REAERDDGWESVVDGDYGRGRXXXXXXXGRDGGYQDYSEPVSEGRFGRQAQQQQQGRXXNGRGGDDFGPRGRGXXXXXXXXXXXXXXXXXRVVDKSIWDADRWESTGSTAWINAGEGDGSAXXXXXXXXSLPSWKVPKAEQETAKANSAPVPDWLPRQGGLGSESRRGVAPLPEGIDTSVKKLGVKGLEAMLKDKFSKTKDGVFAAEDDEAEFYDPDDEGFEKLVDGEQLPLVESEDDVVGSVDVGAAVQDFRGAVRYDDPNAPRPKGLGVVARSEAEAAGGGFRMRSPSRAAXXXXXXXTT----GSTGGGRDASPAVDDYDEDGSSGNKSASRSKGSXXXXXXXXXXXNGIAVXXXXXXXXXXAVLSEERKREQDGVAEKLGKKDKKTKSQAVERKPTYTAINIADMETLEQQASFSFRDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDSNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSSMVIGGANALRQVERFKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPRG 1011
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA) HSP 1 Score: 186 bits (471), Expect = 8.460e-44 Identity = 157/490 (32.04%), Postives = 225/490 (45.92%), Query Frame = 2
Query: 2219 EGIDTSVKKLGVKGLEAMLKDKFSKMKDGVFTAEDDEAEFYDPDDEGFERLVDGEQLPLVESEDDVVGSVDVGAAVQDFRGAVRYDDPNAPRPKGLGVVARSEAEAAGGGFRMRSPSRAXXXXXXXXXXXXXXGSTGGGRDASPAVDDYDKDGSSGNKSASRTKGGRGDDGGGSVGGDDIAFGRGVAEGEDVAVVSEDRKQEQDGVTGKVGKKDKTTKSQAVEKKPTYTA-INIADMETLEQQASFSFHDLGIQDRTVLKNIKKLGIDSPTDVQVSA-----------------IRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQV--------------------------------------------------------ERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIM 3466
+G+D S+ KL ++ LEA L++KF A+ D+ +FYD DDEG+E G+ P E+ + G+ A + AP VV +E A GGFRMR A A +D +DGS S+ + G + V +GE A V+ +K+E A E Y + + +A + T++ S +F +LG+ D +L N+ +G++ PT VQ SA + LL DV+IHAHTGSGKTLA+LLPL+ D D +++QAVVVAPGREL SQIF+V ++L++GTG+R+ M+IGGAN RQV +R+K KP ++I TPGR+CEL +++R+KL V+ VVLDEVD L+RPPYD+EID I+
Sbjct: 301 QGLDRSMTKLSLEELEARLRNKF-------VDAKKDDQDFYDKDDEGYE----GDGPP---PEEPLEGTAVTKAGESGAEADSXXXEEAAPPS----VVEIAEVAAKEGGFRMR---------------------------ARQAPEDGYEDGSESRGSSKKKSG------------------KVVGQGEWEAEVAAAKKKE------------------AEEFDVEYLSHLTVASLGTVDPTTSGTFEELGVTDVKLLDNLAGMGLERPTHVQASAAFVVLCIENWRKLQASALSELLGGTNDVVIHAHTGSGKTLAFLLPLLQRIDTDDDSVQAVVVAPGRELGSQIFAVAQQLVEGTGIRTQMLIGGANVNRQVYAHVGISQAVALHGARHRPAARNFNSDYHLQATGTTSTVWIVNSQSPIIDDPPRHIDRLKANKPHVLIGTPGRVCELALEKKRVKLANVKFVVLDEVDTLMRPPYDEEIDQII 709
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA) HSP 1 Score: 167 bits (422), Expect = 6.850e-40 Identity = 86/195 (44.10%), Postives = 127/195 (65.13%), Query Frame = 2
Query: 2900 YTAINIADMETLEQ--QASFSFHDLGIQDRT----VLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIM 3466
Y N+ +E+L + A+ SF + G+ + +L N++++GI PT VQ +A++ LL E RD ++HA TGSGKTLAYLLP + DPD + +Q VVV P REL +Q+ +V +L+ GTG+ +IGGAN RQ+E +KK +PQ+V+ TPGRL +LV + R+++G VLDEVD LL + E+D +M
Sbjct: 125 YDRDNVLSLESLGEISVAAGSFEEAGMTPQNSPAGMLGNLREMGILQPTSVQAAALQSLLVEGRDGVLHAPTGSGKTLAYLLPAVCKVDPDRDVVQVVVVVPSRELGAQVANVLNQLLPGTGITPLSLIGGANINRQIENLKKKRPQVVVGTPGRLADLVIEYGRLRVGHATVAVLDEVDMLLESQFRGEVDHLM 319
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A7S4BCL2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BCL2_CHRCT) HSP 1 Score: 156 bits (394), Expect = 4.970e-36 Identity = 81/166 (48.80%), Postives = 115/166 (69.28%), Query Frame = 2
Query: 2945 ASFSFHDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPY 3442
+S SF LG+ V++N+K I +P +Q++A + S RDV+IHAHTGSGKTLA+LLPLI DP + QA+V++P RELA Q + V E L++ + LR + GGAN RQ+ER++K +PQ++I T GR+CEL F+ +++KL VR +VLDEVD LR P+
Sbjct: 126 SSNSFEGLGVTVPVVIENLKAAFITTPNALQLAAFEPIAS-GRDVLIHAHTGSGKTLAFLLPLIEQLDPSSKEPQALVLSPSRELAYQTYRVAEMLLKDSPLRVVSLAGGANPSRQIERVRKERPQLLIGTAGRVCELNFEAKKLKLQRVRHLVLDEVDEALRTPH 290
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A7S3HFU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFU4_9STRA) HSP 1 Score: 144 bits (364), Expect = 5.460e-36 Identity = 72/151 (47.68%), Postives = 102/151 (67.55%), Query Frame = 2
Query: 3026 TDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATP 3478
T +Q +AI L ++V++ A TGSGKTLAYLLPL+ DP +QA+++AP REL QI V L QGT R +IGGAN Q R++ +PQI+IATPGRL E+VF +++LG V+ VV+DEVD++++ PY E++ ++ ATP
Sbjct: 1 TQIQAAAIPAL-HRGQNVVLQAQTGSGKTLAYLLPLLKVVDPSVKQVQAIILAPSRELVQQIGQVAASLFQGTDYRVQTLIGGANIHHQTIRLRDDRPQILIATPGRLAEIVFKLEKLRLGRVKVVVVDEVDSMMQEPYIGEVETLLQATP 150
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A0G4F225_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F225_VITBC) HSP 1 Score: 158 bits (400), Expect = 5.520e-36 Identity = 89/205 (43.41%), Postives = 132/205 (64.39%), Query Frame = 2
Query: 2936 EQQASFSFHDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIA-------------ATDPDTN---------ALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPGG 3484
E+Q F+ D+GI + +++N+++ GI +PT Q+ AI +L D D+IIHAHTGSGKTLAYLLPL+ ATD + N + ++VAPGREL +QI VC +++GTGLR M++GGAN Q+E++K P++V+ TPGRL + V DRR++ L V+ +VLDEVD L+R PY+ +++++M P G
Sbjct: 359 EKQRRFTDPDIGIGNAMMVENLRRGGILNPTHTQIKAIPRILQGD-DLIIHAHTGSGKTLAYLLPLLERMLNEHGATAATNATDINGNRGGVQGRRRGPELLIVAPGRELVAQIAKVCRVVLEGTGLRCAMLLGGANPKYQLEQLKG-GPEVVVGTPGRLYDFVLDRRKVDLSRVKYLVLDEVDQLIRDPYEGQLESLMATIPKG 561
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A4D9D1Y7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y7_9STRA) HSP 1 Score: 148 bits (374), Expect = 6.580e-34 Identity = 72/162 (44.44%), Postives = 115/162 (70.99%), Query Frame = 2
Query: 2987 VLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDA 3472
+L N++K+G+ +PT +Q +AI LL + DVI+H++TGSGKTLAYLLPL++ DP + Q +V+AP RELA+QI SV E+L + T + +IGGA+ RQ+E+++ +PQ+++ TPGR+ E+V ++R+ ++G +VLDEVD LL Y ++ ++ A
Sbjct: 74 LLANLQKMGLTAPTLIQAAAIPALLKGE-DVILHSYTGSGKTLAYLLPLLSRLDPAQSHTQLLVIAPSRELAAQIASVAEELTEDTDINVVSLIGGASQQRQIEKLRWERPQVLVGTPGRVAEMVLEKRKARIGRAEMLVLDEVDMLLDDSYHGDLRMLVQA 234
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A0G4FYR2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FYR2_9ALVE) HSP 1 Score: 149 bits (375), Expect = 1.300e-32 Identity = 82/192 (42.71%), Postives = 118/192 (61.46%), Query Frame = 2
Query: 2909 INIADMETLEQQASFSFHDLGIQDRTVLKNIKKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRR--RMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATP 3478
I+ + M LE SF D GI D ++L+ +++ G+ PT+ Q + LLS DV+ +HTGSGKTLA+LLPL+ DP + Q VV+ P RELA Q+ V +L + + L ++IGGAN RQ++ I+K KPQI++ TPGRL + R R++ G +R VLDEVDALLR P++ + +M P
Sbjct: 458 IDFSRMGFLEPDKGKSFEDFGIVDPSLLEALREGGVRHPTEAQ-RRVMPLLSSGHDVVCESHTGSGKTLAFLLPLLQKIDPSVRSPQMVVIVPSRELAIQVGRVAHQLTEKSELGVGLLIGGANPERQMQAIRKEKPQILVGTPGRLYDAFIGRSGSRLRAGAIRYAVLDEVDALLREPFNHHLTELMHTLP 648
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A7S0BFW5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BFW5_9RHOD) HSP 1 Score: 137 bits (345), Expect = 8.690e-32 Identity = 72/148 (48.65%), Postives = 104/148 (70.27%), Query Frame = 2
Query: 3023 PTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIM 3466
PT +Q + + L E RD++I +HTG+GKT+A+LLP+I + D++ +QA +VAP RELA QI + C+KLI+ +RS +IGGAN RQVE++KK+KP IV+ TPGRL EL + R++KLG VR V+DEVD L + I +++
Sbjct: 149 PTKIQSAVVPWAL-EGRDIVICSHTGTGKTMAFLLPIIEQIEEDSDEIQATIVAPTRELAMQISAECDKLIRRMDVRSIPLIGGANPARQVEKMKKLKPHIVVGTPGRLAELC-ESRKLKLGSVRMTVVDEVDQCLAQGFIDTIGSLI 294
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Match: A0A1Q9PH19_9BACI (RNA helicase n=2 Tax=Bacillus sp. MRMR6 TaxID=1928617 RepID=A0A1Q9PH19_9BACI) HSP 1 Score: 137 bits (346), Expect = 2.900e-31 Identity = 73/158 (46.20%), Postives = 113/158 (71.52%), Query Frame = 2
Query: 3002 KKLGIDSPTDVQVSAIRGLLSEDRDVIIHAHTGSGKTLAYLLPLIAATDPDTNALQAVVVAPGRELASQIFSVCEKLIQGTGLRSTMVIGGANALRQVERIKKVKPQIVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDAT 3475
+K G ++PT++QV+AI L+ E +D+I + TG+GKTLAYLLPL+ + D+ +LQAVV+A +EL Q+F +K +G+G+R T +IGGAN +RQ+E++KK +P ++ ATPGRL EL+ ++++K+ VR VVLDE D LL P + + I+ +T
Sbjct: 20 EKSGFETPTNIQVAAIP-LVLEGKDIIAESPTGTGKTLAYLLPLLNQIENDSQSLQAVVLASSQELVMQVFQEFQKWSEGSGIRGTSIIGGANVVRQLEKLKK-RPHVIFATPGRLFELI-KQKKVKMHEVRMVVLDEGDQLLIPEHLNTVQTIVKST 174 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1453.3484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1453.3484.1 >prot_Ecto-sp13_S_contig1453.3484.1 ID=prot_Ecto-sp13_S_contig1453.3484.1|Name=mRNA_Ecto-sp13_S_contig1453.3484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=852bp MDDFELVEEGTGDDGTWDDYSDYSDDPGLYKKPRGADTAYVEDLGTELKVback to top mRNA from alignment at Ecto-sp13_S_contig1453:8808..16778+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1453.3484.1 ID=mRNA_Ecto-sp13_S_contig1453.3484.1|Name=mRNA_Ecto-sp13_S_contig1453.3484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7971bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1453:8808..16778+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1453:8808..16778+ >mRNA_Ecto-sp13_S_contig1453.3484.1 ID=mRNA_Ecto-sp13_S_contig1453.3484.1|Name=mRNA_Ecto-sp13_S_contig1453.3484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2556bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1453:8808..16778+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |