mRNA_Ecto-sp13_S_contig14519.3473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14519.3473.1
Unique NamemRNA_Ecto-sp13_S_contig14519.3473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A6H5JA26_9PHAE (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA26_9PHAE)

HSP 1 Score: 425 bits (1092), Expect = 3.660e-148
Identity = 211/229 (92.14%), Postives = 218/229 (95.20%), Query Frame = 1
Query:    1 MSGGIKNVVVIVAMEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGEVSGIRSPHEMPRCLSEA 687
            MSGGIKNVVVIVAMEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQ+GTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVV+TGSSFDHT+TDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGE   +++       L +A
Sbjct:   85 MSGGIKNVVVIVAMEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQVGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVSTGSSFDHTKTDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGEEEFLQNLKAASDSLQQA 313          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: D8LCX1_ECTSI (PNP_UDP_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX1_ECTSI)

HSP 1 Score: 399 bits (1025), Expect = 3.170e-139
Identity = 197/214 (92.06%), Postives = 201/214 (93.93%), Query Frame = 1
Query:   46 AEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGEVSGIRSPHEMPRCLSEA 687
            AEA PLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPD+VINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHP PEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGE   +++       L EA
Sbjct:   18 AEACPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDIVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPAPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGEEEFLQNLKAASDSLQEA 231          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A835YY09_9STRA (Nucleoside phosphorylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY09_9STRA)

HSP 1 Score: 240 bits (613), Expect = 8.860e-77
Identity = 123/217 (56.68%), Postives = 148/217 (68.20%), Query Frame = 1
Query:   40 MEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHG-TPLFCIKVVTDLVDGGGVGEVSGIRSPHEMPRCLSEA 687
            MEAEA PLI+ L L  D   FPA+AP KC++    G  ++VVTNGKC R GVD +GTVA GL+ WLS+E  KPDLVINAGTAGGF +   AIGDVF+S+   NHDRRI IPG+ E+G+G  ++ PT ++   LG+K GVVTT +S D  E D K M  N+A VKDME AAVAWACEQH  TP FCIKVVTD+VDG        + +     R L EA
Sbjct:    1 MEAEAQPLIDHLKLELDEAAFPASAPCKCYTSERNGYTMHVVTNGKCRRHGVDHVGTVAGGLAAWLSIEKFKPDLVINAGTAGGFNRMGAAIGDVFVSSRTVNHDRRIAIPGWTEWGVGKTDAVPTEQLRGALGYKHGVVTTSNSLDFIEEDAKHMLANEASVKDMEGAAVAWACEQHNNTPFFCIKVVTDIVDGDRPTHEEFLENLGAAARSLQEA 217          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A7S0S4A1_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4A1_9CHLO)

HSP 1 Score: 238 bits (608), Expect = 1.260e-75
Identity = 118/209 (56.46%), Postives = 153/209 (73.21%), Query Frame = 1
Query:    1 MSGGIKNVVVIVAMEAEASPLIERLGLV-EDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGG 624
            MSG +K V+++ AMEAEA PLI RLGLV +DP K    AP   +SGS    A++VV NG+C   GVD +GTV A LST+L+V+A KPDLVI+AGTAGGFK    +IGD+F+ST V NHDRRIP+P F ++G+G   + PTP M+  LG K GVVT+G+S D+T+    +M+E++A VK+MEAAA+AW     GTPL C+K VTD+VDGG
Sbjct:   16 MSGPVKTVLLVFAMEAEAQPLITRLGLVKDDPPKVLQPAPCVTYSGSLGSLAVHVVWNGRCGTHGVDNVGTVPAALSTYLAVQAFKPDLVISAGTAGGFKSQGASIGDIFVSTHVVNHDRRIPLPSFDQYGLGKASTLPTPNMVTSLGLKTGVVTSGNSLDYTDKCMDIMKEHEAAVKEMEAAAIAWVTALFGTPLVCVKAVTDIVDGG 224          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: W7TST5_9STRA (Nucleoside phosphorylase domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TST5_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.350e-74
Identity = 118/226 (52.21%), Postives = 157/226 (69.47%), Query Frame = 1
Query:   10 GIKNVVVIVAMEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGEVSGIRSPHEMPRCLSEA 687
            GIK++V+ +AME EA PLI +LGL +  + F  AAP  CF+G+Y    + +VTNGK  +FG D +GTV A L+T+L+VE +KPDL+INAGTAGGF+    AIGDV IS+++ NHDRR+ +P F ++G+ NH++  TP + + L FK GVV+TG+S DH E DD +M  NDA VKDMEAAAVAWA E +  P F +KVVTD+VDG    E   + +     R L EA
Sbjct:   29 GIKSIVITIAMEGEAMPLITKLGLTQQSNYFGHAAPFHCFTGTYNNYNLAIVTNGKDRKFGCDNVGTVPAALATYLAVEQLKPDLLINAGTAGGFESKGMAIGDVLISSTIHNHDRRMLLPIFVDYGVHNHKAVETPRLREALKFKLGVVSTGNSLDHVEADDALMAANDASVKDMEAAAVAWAAELYSVPYFALKVVTDIVDGAHATEEEFVANFAMAQRRLQEA 254          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A1D1ZX64_AUXPR (PNP_UDP_1 domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZX64_AUXPR)

HSP 1 Score: 231 bits (590), Expect = 1.140e-72
Identity = 110/204 (53.92%), Postives = 151/204 (74.02%), Query Frame = 1
Query:   13 IKNVVVIVAMEAEASPLIERLGLVED-PDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDG 621
            IK ++V++AMEAEA+PLI+ LGLV+D P   P  AP   FSGS+ GA ++VV NGKC + GVD +GTV A L+ +L+++A  PDLVI+ GTAGGF     AIGDVF+ST+  NHDRRIPIPGF ++G+G H + PTP++   LG K G+V++G+S D+ E D ++M E+D  VK+MEAAA+AW+    G P+F +K +TD+VDG
Sbjct:   37 IKRILVLIAMEAEAAPLIQALGLVQDTPRVIPEPAPCVSFSGSHAGAHVHVVVNGKCGKHGVDNVGTVPAALTAYLALQAFDPDLVISTGTAGGFGAQGAAIGDVFLSTATVNHDRRIPIPGFDQYGLGLHAALPTPQLQAALGLKAGLVSSGNSLDYVERDMEIMREHDTSVKEMEAAAIAWSASLFGVPMFSVKAITDIVDG 240          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A087SFB9_AUXPR (5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFB9_AUXPR)

HSP 1 Score: 225 bits (574), Expect = 2.340e-70
Identity = 107/201 (53.23%), Postives = 148/201 (73.63%), Query Frame = 1
Query:   13 IKNVVVIVAMEAEASPLIERLGLVED-PDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDL 612
            IK ++V++AMEAEA+PLI+ LGLV+D P   P  AP   FSGS+ GA ++VV NGKC + GVD +GTV A L+ +L+++A  PDLVI+ GTAGGF     AIGDVF+ST+  NHDRRIPIPGF ++G+G H + PTP++   LG K G+V++G+S D+ E D ++M E+D  VK+MEAAA+AW+    G P+F +K +TD+
Sbjct:   37 IKRILVLIAMEAEAAPLIQALGLVQDTPRVIPEPAPCVSFSGSHAGAHVHVVVNGKCGKHGVDNVGTVPAALTAYLALQAFDPDLVISTGTAGGFGAQGAAIGDVFLSTATVNHDRRIPIPGFDQYGLGLHAALPTPQLQAALGLKAGLVSSGNSLDYVERDMEIMREHDTSVKEMEAAAIAWSASLFGVPMFSVKAITDI 237          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A7S0Y7R1_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0Y7R1_9CHLO)

HSP 1 Score: 224 bits (570), Expect = 6.060e-70
Identity = 113/214 (52.80%), Postives = 151/214 (70.56%), Query Frame = 1
Query:    7 GGIKNVVVIVAMEAEASPLIERLGLVED-PDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWAC----EQHGT---PLFCIKVVTDLVDGG 624
            G IK VV   AMEAEA+P I+ LGL++D P K P   P+  FSG Y+G  ++VV NGK   FGVD +GTV A L+++L+++A+ PD+VI+AGTAGGFK    AIGDVF+ T V NHDRRIPIPGF  +GIG     PTP++   LG K+GV+++G+S D+T++  K+ME     +K+ME+AA+AW+C    +  GT   PL CIK VTD+VDGG
Sbjct:    6 GPIKTVVFFFAMEAEATPFIQALGLIKDEPSKLPGPIPAVSFSGDYEGLKVHVVWNGKDPLFGVDNVGTVPASLTSYLAIQALHPDIVISAGTAGGFKSKTAAIGDVFLGTHVVNHDRRIPIPGFDAYGIGRQLCLPTPQLRAALGLKEGVISSGNSLDYTDSCLKIMEAEGVAIKEMESAAIAWSCRLFVDASGTTPLPLICIKAVTDIVDGG 219          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A6S9GE08_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GE08_HETAK)

HSP 1 Score: 221 bits (564), Expect = 5.060e-69
Identity = 114/227 (50.22%), Postives = 146/227 (64.32%), Query Frame = 1
Query:    7 GGIKNVVVIVAMEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDGGGVGEVSGIRSPHEMPRCLSEA 687
            G I  ++VI+AM+AEA PLI+ LGL E    F    P+KCFSG   G  ++VV NG+  +FG D +GTV A L+T+  ++ + PDL+INAGTAGGF++    IGD+F+ST  KNHDRRI IP F E+  G +E   T  M KELGFK G+VTTG+S DH   DD++M ENDA VKDMEAAA+A       TP F +K VTD+VDG        + +     R L EA
Sbjct:   14 GKINRIMVIIAMQAEAQPLIDCLGLTEQSSVFSGPLPAKCFSGLVDGCNVDVVVNGQDPKFGNDSVGTVCAALTTYEGLKTLSPDLLINAGTAGGFRRKGAEIGDIFLSTECKNHDRRIAIPSFTEWATGAYECVSTANMQKELGFKCGIVTTGNSLDHEPKDDELMLENDASVKDMEAAAIASTAALFETPFFAVKSVTDIVDGNVPTHEEFLENLSAAARSLQEA 240          
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Match: A0A835W7S0_CHLIN (PNP_UDP_1 domain-containing protein n=5 Tax=Chlamydomonas TaxID=3052 RepID=A0A835W7S0_CHLIN)

HSP 1 Score: 220 bits (560), Expect = 1.310e-68
Identity = 110/204 (53.92%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   13 IKNVVVIVAMEAEASPLIERLGLVED-PDKFPAAAPSKCFSGSYQGAAINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKKHDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQGVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKVVTDLVDG 621
            IK+V+++ AMEAEA PLI+ LGL ED P K    AP   FSG ++G A++VV NGKC   GVD +GTV A LST+L+V A KPD+VI+AGT GGFK    AIGDVF+ T+V NHDRRIP+P F ++G+G+     TP +   LG K GVV++G+S D+T+   ++M  + A +K+MEAAA+AWAC  +  PL C+K VTD+VDG
Sbjct:    2 IKSVLLVFAMEAEAQPLIQALGLKEDVPAKIVGPAPCVTFSGEHEGLAVHVVWNGKCKDHGVDNVGTVPASLSTYLAVLAFKPDVVISAGTCGGFKAQGAAIGDVFLGTAVINHDRRIPLPAFDKYGLGHAALLATPHLQAALGLKSGVVSSGNSLDYTDKCMEIMTSHGAALKEMEAAAIAWACALYKVPLMCVKAVTDIVDG 205          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14519.3473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA26_9PHAE3.660e-14892.14PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
D8LCX1_ECTSI3.170e-13992.06PNP_UDP_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YY09_9STRA8.860e-7756.68Nucleoside phosphorylase domain-containing protein... [more]
A0A7S0S4A1_9CHLO1.260e-7556.46Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
W7TST5_9STRA1.350e-7452.21Nucleoside phosphorylase domain protein n=1 Tax=Na... [more]
A0A1D1ZX64_AUXPR1.140e-7253.92PNP_UDP_1 domain-containing protein n=1 Tax=Auxeno... [more]
A0A087SFB9_AUXPR2.340e-7053.235'-methylthioadenosine/S-adenosylhomocysteine nucl... [more]
A0A7S0Y7R1_9CHLO6.060e-7052.80Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A6S9GE08_HETAK5.060e-6950.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835W7S0_CHLIN1.310e-6853.92PNP_UDP_1 domain-containing protein n=5 Tax=Chlamy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14519contigEcto-sp13_S_contig14519:538..3958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score401.0
Seed ortholog evalue4e-109
Seed eggNOG ortholog2880.D8LCX1
Model size717
KEGG rclassRC00063,RC00318
KEGG koko:K01244
KEGG ReactionR01401
KEGG Pathwayko00270,ko01100,map00270,map01100
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008477,GO:0008652,GO:0008930,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009888,GO:0009987,GO:0010087,GO:0016020,GO:0016053,GO:0016787,GO:0016798,GO:0016799,GO:0017144,GO:0019509,GO:0019752,GO:0032502,GO:0043094,GO:0043102,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0048856,GO:0071265,GO:0071267,GO:0071704,GO:0071944,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons5
EggNOG free text desc.methylthioadenosine nucleosidase activity
EggNOG OGs28MG5@1,2QTZK@2759
Ec32 ortholog descriptionNucleoside phosphorylase domain
Ec32 orthologEc-07_007230.1
EC3.2.2.16
Cds size717
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.9731956-CDS-Ecto-sp13_S_contig14519:537..7371681462774.9731956-CDS-Ecto-sp13_S_contig14519:537..737Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14519 538..737 -
1681462774.98696-CDS-Ecto-sp13_S_contig14519:1376..15341681462774.98696-CDS-Ecto-sp13_S_contig14519:1376..1534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14519 1377..1534 -
1681462775.0018666-CDS-Ecto-sp13_S_contig14519:2184..22971681462775.0018666-CDS-Ecto-sp13_S_contig14519:2184..2297Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14519 2185..2297 -
1681462775.0157518-CDS-Ecto-sp13_S_contig14519:3110..33101681462775.0157518-CDS-Ecto-sp13_S_contig14519:3110..3310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14519 3111..3310 -
1681462775.0283492-CDS-Ecto-sp13_S_contig14519:3912..39581681462775.0283492-CDS-Ecto-sp13_S_contig14519:3912..3958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14519 3913..3958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14519.3473.1prot_Ecto-sp13_S_contig14519.3473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14519 538..3958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14519.3473.1

>prot_Ecto-sp13_S_contig14519.3473.1 ID=prot_Ecto-sp13_S_contig14519.3473.1|Name=mRNA_Ecto-sp13_S_contig14519.3473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
MSGGIKNVVVIVAMEAEASPLIERLGLVEDPDKFPAAAPSKCFSGSYQGA
AINVVTNGKCSRFGVDQIGTVAAGLSTWLSVEAIKPDLVINAGTAGGFKK
HDTAIGDVFISTSVKNHDRRIPIPGFKEFGIGNHESHPTPEMLKELGFKQ
GVVTTGSSFDHTETDDKMMEENDARVKDMEAAAVAWACEQHGTPLFCIKV
VTDLVDGGGVGEVSGIRSPHEMPRCLSEAFLFSDALILT
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mRNA from alignment at Ecto-sp13_S_contig14519:538..3958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14519.3473.1 ID=mRNA_Ecto-sp13_S_contig14519.3473.1|Name=mRNA_Ecto-sp13_S_contig14519.3473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3421bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14519:538..3958- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCGGAATCAAGAATGTTGTGGTGATCGTCGCGATGGAAGGTAA GAGTACGATAGGGCGGGGGGTGAGGCAAACTCAATTTTTGTCACTGAAGG TGTTCATGCTGGCACGGAACACGCGGTATTCTCGCACAAACATGCCCTCC TGATGAGGAGGCATCCCGAGAACAGACGACTGATGAGAGATGATATTTTA CGGACACGTTGCTGCTGTCGTGAAAACGTGATTGCGCCGCCTTCTCTTCG TGCGGAGTTTTCGAAATGTCGCTGTATGCTGCTCAGGAAATCATGGAAAC ACAAGTAGCCTTCACTGACGCTATGGATTCGTGGCTAATCTGTCTTGGAC TCTTTTCTTAGATAGAGATGGATTCGTTGTGCCATATCAAGAGAATACAG AAAAAAAATATTAAAAAAATAGTAGTGGTGACAGCACCTGCGCCACACGC GCTACACCATTATAGCGACCCGGCGACACGCACGTATTCTGTCACCAAAG TAGCAGCGCGAGAATGCACGAGGAGGTATTACACCTACATTTCATGCAAA CTTCATAGGAAGACAATTAGGTGGTCAGCCAGTGCGGAACCCATCACTGA CTCTCTTTTCTCTGGTTGCGCGCGGTACGCCGGCCCCCCCTTGTACAGCC GAAGCGTCTCCACTGATCGAACGCCTCGGGCTCGTCGAAGACCCGGACAA GTTCCCTGCCGCCGCGCCTTCCAAGTGCTTCAGTGGCTCCTACCAAGGTG CAGCGATCAACGTGGTAACCAACGGGAAATGCTCCCGGTTTGGCGTGGAC CAAATCGGAACAGTGGCGGCAGGACTGTCAACTTGGCTATCGGTTGAGGT AGGAGAGAAGATTGAGATTTGCAACACCACACGATTCAGCAACTCCTCCT CAAGTCCATGCTGTCAAGGGAGCCACAACCGATGCGCAAACGAAAAAGAC GCGTGTGTTTGTATGCTATCGAAGCGTCGTCGAAAGACAGGCGGTGGCGA ATGAAAGCGTCTTTGATGCGGTTGTTTGCGCTCTGTTTTTTTTTTTTTTT CACGTCAAACCAGCCTTCACAGCACTAGTGCCGTGTACTCCAACCCGTGG TCACGCAAAAGTTCCTCTCTACCCTCCCCTCCTGCGGTACTCTGCCTTCG ATTTTTAATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTGTATTCACACG AACTAGCGCTATCCACTGGGCCAGGAGCGGAAGCGAGAGAAAAATCAGTT TGGAACTGTTTATTTTCACACAATCGTACACGGTCGTCGTGAGGGTTTGC TTTGACTTGTTTGACAAACACAGGTAGCAACGTCGATTCTGTCCTCGGTG TCGCAGCCAAGAAATGCGGCATGATGATAGTGTCACGTCGTGTACCAAGA AAGCCAACTCTCTTCGACTTCATTTTTTTCCAGGCAACAACGCGAAATGG CAGAAACCCAGACACCTGCACACATACATCTTGCCCTCCTCTATTTTATA GTAAGCGCAATCGATTGTCGGCGTTCAATCGTGAGGTTGGGTTCGTGCTA CCACTTCCCCGGTCCCTCTTATTTCGCCTCCCGCCTTTGCATGTCACCTT TTCACGAACTCCCCGCCCCCCCTCCCTCCCCCCTCACCCCTTCCCTCCCA TGCTTGGCCAGGCGATCAAGCCGGATCTCGTGATAAACGCCGGTACCGCC GGCGGATTCAAGAAACACGACACCGCCATCGGCGACGTTTTCATCAGCAC CAGCGTGAAGAACCATGACCGAAGGTGTGCGGCGCGATAACGTAGGGTAA GTTCTTCCTGGGGATGCAACAACGGCAGTGAACTTTCCGATGATGTTGCA CGTCCCTTTGAAAGTGCCCTCTGCGGTGAAGCAGACCGGTCCCTCTTCGG TAGACCCCCCCAACGAGCCGTACTGCCTCTCCTCGTGTCAGAAACGACGC AGTGTTTGCCCACGCTTTTTCCCATGCTTTCGGGCTCTACTGTACATTGC CAAAGAGCGCACCAGCTATTGTTGTAGTTCCCCCCTCGTGGTTGCACACC CAAGAAAATCACTGTCCCACCTGTCCGATGTGATTCGCGGAACCCAAGTC CCACGAAGGAGCTCAGGCCCCGCCCGTCCCCCCCCCCGCCCCTATCACGC TTATGAAACGATGCCTCTACGCGTCTCCCCCGCTGCGTACCTCGCGCCTG CAGCAGTGTTTTTTTTTACTTGACTTCAAATCAGCGCTCACGGCGTTTGT GACGTTTACTCCAACCCGCGGTCGCACAGCCTGCAGTAGTGCGCACGGAC AATGCAGCAGTTGGATTCACGTGTTTTTTTTTTTTTTCCCGGGAAGGCGA CGCAGAATCTTTGGCACGAGTGAACCAGGCTTCCCCCCCCCCCCGCTGCG TGCGTGCGTTGTTGTATTCCGAAGAATCCCAATCCCGGGTTTCAAGGAGT TTGGCATCGGCAACCACGAGTCCCACCCTACCCCGGAGATGCTAAAGGAG TTGGGCTTCAAGCAAGGGGTGGTGACCACCGGTAGCTCCTTCGACCACAC GGAGACGGACGACAAGATGATGGAAGAAAACGGTGATCAGAATACGGAAC GGGCACGGAGATAAGAAAAAGCGTCAAAATCGGGTCGAGGCTCAGTTTCT TTTCTCATCGCCACTACTGTCGAGCATACGTGTAGTGCAGGATCCACCGC TGAGTTTTGTTTCTTGTCGTATTTTTCGTGAAAATTGGAGCCTCTTTTTC TTACCGAAATACCAGCACTAAACTGGGGGCCCGGTCCGCACACTCCTTAC CTTACCACGCTTTTGTTTTCATTCGCTAGTGTCATACTACTTTTGCGACC ATGCGGGAAAGTGAAGTATTAGCTTCACCACCGCGGCAGTTTTTCCACCT CTGGAAAGTAGAAAATAGTTGTGGTCCATCCACCGCATCCTGCACGGCAA CTTGTCCGTTCACGTTTTTTGTACAGCCACCGTCCTGACAGCGAACAACA TGCAGCACCACCGCGACCTCCGTGAGAGGCGCGGAGGACGGCAGCGGCTC AGTGCCCACTGGCAAATAACGTGTTTTGCCGTGTTTGATTGAACCCTTGT AGCGTGTAAATTGACCTCCGCCATGTGCTGCCCGTCCGTTTGCGTCGCAC ACACGTGCGTTCGTCTTTTTTCTCATCCCGGCTCGCGACGAAATGAATTG CTGTGGTTGGCTTGTGATCAGACGCGAGGGTGAAGGACATGGAGGCGGCG GCCGTGGCCTGGGCTTGCGAACAGCACGGGACCCCTCTCTTTTGCATCAA GGTGGTCACGGACCTCGTAGATGGTGGAGGGGTAGGAGAGGTGAGTGGAA TACGGAGCCCCCACGAAATGCCCAGGTGCCTATCAGAGGCGTTTCTGTTT TCAGATGCACTGATACTGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14519:538..3958-

>mRNA_Ecto-sp13_S_contig14519.3473.1 ID=mRNA_Ecto-sp13_S_contig14519.3473.1|Name=mRNA_Ecto-sp13_S_contig14519.3473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14519:538..3958- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCGGAATCAAGAATGTTGTGGTGATCGTCGCGATGGAAGCCGA
AGCGTCTCCACTGATCGAACGCCTCGGGCTCGTCGAAGACCCGGACAAGT
TCCCTGCCGCCGCGCCTTCCAAGTGCTTCAGTGGCTCCTACCAAGGTGCA
GCGATCAACGTGGTAACCAACGGGAAATGCTCCCGGTTTGGCGTGGACCA
AATCGGAACAGTGGCGGCAGGACTGTCAACTTGGCTATCGGTTGAGGCGA
TCAAGCCGGATCTCGTGATAAACGCCGGTACCGCCGGCGGATTCAAGAAA
CACGACACCGCCATCGGCGACGTTTTCATCAGCACCAGCGTGAAGAACCA
TGACCGAAGAATCCCAATCCCGGGTTTCAAGGAGTTTGGCATCGGCAACC
ACGAGTCCCACCCTACCCCGGAGATGCTAAAGGAGTTGGGCTTCAAGCAA
GGGGTGGTGACCACCGGTAGCTCCTTCGACCACACGGAGACGGACGACAA
GATGATGGAAGAAAACGACGCGAGGGTGAAGGACATGGAGGCGGCGGCCG
TGGCCTGGGCTTGCGAACAGCACGGGACCCCTCTCTTTTGCATCAAGGTG
GTCACGGACCTCGTAGATGGTGGAGGGGTAGGAGAGGTGAGTGGAATACG
GAGCCCCCACGAAATGCCCAGGTGCCTATCAGAGGCGTTTCTGTTTTCAG
ATGCACTGATACTGACG
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