mRNA_Ecto-sp13_S_contig14503.3463.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14503.3463.1
Unique NamemRNA_Ecto-sp13_S_contig14503.3463.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A7S3B7Q8_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7Q8_9VIRI)

HSP 1 Score: 59.7 bits (143), Expect = 4.470e-9
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    4 LAKMLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREA 162
            +A++L  A   +GD FLD+GSG+GKA +AA L+ P+L+  RG+EIL  LH EA
Sbjct:  123 VARVLDAAHAREGDTFLDLGSGSGKAVIAAALVRPDLASVRGIEILPELHTEA 175          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A812VUJ9_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812VUJ9_9DINO)

HSP 1 Score: 59.7 bits (143), Expect = 6.890e-9
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 YLAKMLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREAQ 165
            + A + R+AQ   G+ FLD+GSGTG+A +AA L +P+L  CRG E+L+ LH  A+
Sbjct:  840 FCALLQRVAQPQPGETFLDLGSGTGRALLAAALGFPSLRCCRGYELLEPLHAAAE 894          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A812UV67_SYMPI (ANK1 protein (Fragment) n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812UV67_SYMPI)

HSP 1 Score: 55.8 bits (133), Expect = 2.170e-8
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   19 RLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREAQ 165
            R+AQ   G+ FLD+GSG+G+A +AA L +P L  CRG E+L  LH  A+
Sbjct:   43 RVAQPQPGETFLDLGSGSGRAVLAAALAFPGLRCCRGYELLGPLHAAAE 91          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A7R9UEU9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UEU9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.470e-7
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 YLAKMLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREAQ 165
            +LA ++R  +   G+VFLD+GSG GKA + A  LYP+L+   G+EIL  L+R A+
Sbjct:   17 WLATLMRQVEPAAGEVFLDLGSGMGKAVLGAAALYPDLAKSAGIEILPKLNRRAK 71          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A7R9TQT8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TQT8_9VIRI)

HSP 1 Score: 54.7 bits (130), Expect = 2.920e-7
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   40 GDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHRE---AQVRHD 177
            G+ FLD+GSG+GKA +AA L  P+L+ C+G+EIL  LH E   A+ R+D
Sbjct:   89 GERFLDLGSGSGKAVIAAALARPDLAACQGIEILPSLHAESVAAKERYD 137          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A7S4IJ33_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IJ33_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.390e-7
Identity = 22/43 (51.16%), Postives = 33/43 (76.74%), Query Frame = 1
Query:   37 DGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREAQ 165
            DG VF D+GSGTG+  ++A  L+P + +CRG+E+L G+HR A+
Sbjct:  157 DGMVFADIGSGTGRLVLSAAALHPGMRLCRGLELLPGIHRLAE 199          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A7S3V4P1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V4P1_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.480e-6
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   37 DGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLH-------REAQVRHD 177
            DG  FLD+GSG G+  +    L+P + +C+G+EIL GLH        + ++RHD
Sbjct:   19 DGKTFLDIGSGAGRLVIGVAALHPGIKLCKGLEILPGLHDASLQSLEKCRIRHD 72          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A7S0HXH4_9CRYP (Histone-lysine N-methyltransferase, H3 lysine-79 specific (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HXH4_9CRYP)

HSP 1 Score: 50.1 bits (118), Expect = 3.100e-6
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    7 AKMLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREAQVRHD 177
            A++L L Q   G+ F+D+GSGTGKA + A  L+P  S   G+E ++ LH+ A   H+
Sbjct:    8 AEILHLVQPKQGETFVDLGSGTGKAVIVAASLFP-FSEAIGIEFVEPLHKAATRLHE 63          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A0G4EMU0_VITBC (DOT1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMU0_VITBC)

HSP 1 Score: 52.0 bits (123), Expect = 3.260e-6
Identity = 22/49 (44.90%), Postives = 32/49 (65.31%), Query Frame = 1
Query:    1 YLAKMLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDG 147
            +LA +LR A+   G+ F+D+GSG G+A + A  LYP+   C G+E L G
Sbjct:  138 FLAVLLRAAEPKQGETFVDLGSGLGRAVLGAAALYPSFRKCTGIEYLQG 186          
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Match: A0A418NVJ1_9SPHN (Methyltransferase domain-containing protein n=1 Tax=Aurantiacibacter zhengii TaxID=2307003 RepID=A0A418NVJ1_9SPHN)

HSP 1 Score: 50.4 bits (119), Expect = 6.860e-6
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    4 LAKMLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREAQV 168
            +++MLRLA+I+DGDV  D+GSG G+  +AA   Y   +V  G+EI DGL  EA+ 
Sbjct:   35 VSEMLRLAEIEDGDVLYDLGSGDGRIPIAAAREYGIRAV--GIEIDDGLLEEARA 87          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14503.3463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3B7Q8_9VIRI4.470e-952.83Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A812VUJ9_9DINO6.890e-949.09Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812UV67_SYMPI2.170e-851.02ANK1 protein (Fragment) n=1 Tax=Symbiodinium pilos... [more]
A0A7R9UEU9_9STRA1.470e-747.27Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9TQT8_9VIRI2.920e-753.06Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A7S4IJ33_9STRA7.390e-751.16Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3V4P1_9STRA1.480e-640.74Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S0HXH4_9CRYP3.100e-642.11Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A0G4EMU0_VITBC3.260e-644.90DOT1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A418NVJ1_9SPHN6.860e-649.09Methyltransferase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14503contigEcto-sp13_S_contig14503:3563..3748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size186
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.2533264-UTR-Ecto-sp13_S_contig14503:3562..35741681462774.2533264-UTR-Ecto-sp13_S_contig14503:3562..3574Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14503 3563..3574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462774.2697198-CDS-Ecto-sp13_S_contig14503:3574..37481681462774.2697198-CDS-Ecto-sp13_S_contig14503:3574..3748Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14503 3575..3748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14503.3463.1prot_Ecto-sp13_S_contig14503.3463.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14503 3575..3748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14503.3463.1

>prot_Ecto-sp13_S_contig14503.3463.1 ID=prot_Ecto-sp13_S_contig14503.3463.1|Name=mRNA_Ecto-sp13_S_contig14503.3463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MLRLAQIDDGDVFLDMGSGTGKACVAAGLLYPNLSVCRGVEILDGLHREA
QVRHDCG*
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mRNA from alignment at Ecto-sp13_S_contig14503:3563..3748+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14503.3463.1 ID=mRNA_Ecto-sp13_S_contig14503.3463.1|Name=mRNA_Ecto-sp13_S_contig14503.3463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14503:3563..3748+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACCTGGCGAAGATGCTCCGATTAGCGCAGATCGACGATGGGGACGTGTT CTTGGACATGGGCTCGGGGACCGGGAAGGCCTGCGTCGCGGCCGGGCTGC TGTACCCGAATCTCTCCGTGTGCCGGGGGGTGGAAATTCTGGACGGGTTA CACCGCGAGGCACAGGTACGTCATGACTGTGGATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14503:3563..3748+

>mRNA_Ecto-sp13_S_contig14503.3463.1 ID=mRNA_Ecto-sp13_S_contig14503.3463.1|Name=mRNA_Ecto-sp13_S_contig14503.3463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14503:3563..3748+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCCGATTAGCGCAGATCGACGATGGGGACGTGTTCTTGGACATGGG
CTCGGGGACCGGGAAGGCCTGCGTCGCGGCCGGGCTGCTGTACCCGAATC
TCTCCGTGTGCCGGGGGGTGGAAATTCTGGACGGGTTACACCGCGAGGCA
CAGGTACGTCATGACTGTGGATAA
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