mRNA_Ecto-sp13_S_contig14497.3457.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14497.3457.1
Unique NamemRNA_Ecto-sp13_S_contig14497.3457.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14497.3457.1 vs. uniprot
Match: A0A6H5JGV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGV5_9PHAE)

HSP 1 Score: 546 bits (1408), Expect = 1.390e-189
Identity = 289/317 (91.17%), Postives = 295/317 (93.06%), Query Frame = 1 
Query:    1 CNFHIATATVGEAVNLTSLRELLDLVHHSVLAVGPTALPKLLDADVIGIALRGAESPNTHVAVVCYRILTVLSQNKHVAQRMSRDPAIRAVLVGELRRQVKGWNHAGSGADDDHEAEDEKQQRRGGLADRGEGVTTAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEPGAAGLNRRFGARGGSGRRTAAGEDEEDEVPWPFRSLYGENNYEGAAGYAHGXXXXXXXXXIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLETAAASSLREISHHPELVGLLLRR 951
            CNFHIATAT+GEAVNLTSL ELLDLVHHSVLAVGPTALPKLLDA VIGIALRGAESPNTHVAVVCYRILTVLSQN+HVA+RMSRDPAIRAVL+GELRRQVKGWNHAGSGADDDHEAE EKQQR GGLAD GEG T AARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSS+RRSTAEEPGAAGLNRRFGA G SG RTAAGEDEEDEVPWPFR LYGENNYEGAAGYA+G         IASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLE AAASSL EISHHPELVGLLLRR
Sbjct:  134 CNFHIATATIGEAVNLTSLLELLDLVHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVAVVCYRILTVLSQNRHVARRMSRDPAIRAVLIGELRRQVKGWNHAGSGADDDHEAEGEKQQRMGGLADGGEGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSKRRSTAEEPGAAGLNRRFGAGGVSGGRTAAGEDEEDEVPWPFRFLYGENNYEGAAGYAYGGGNEDDDTIIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLEAAAASSLLEISHHPELVGLLLRR 450
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BLAST of mRNA_Ecto-sp13_S_contig14497.3457.1 vs. uniprot
Match: D7G608_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G608_ECTSI)

HSP 1 Score: 379 bits (972), Expect = 1.510e-126
Identity = 208/237 (87.76%), Postives = 209/237 (88.19%), Query Frame = 1 
Query:  244 MSRDPAIRAVLVGELRRQVKGWNHAGSGADDDHEAEDEKQQRRGGLADRGEGVTTAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEPGAAGLNRRFGARGGSGRRTA-AGEDEEDEVPWPFRSLYGENNYEGAAGYAHGXXXXXXXXXIASVGGGISGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLETAAASSLREISHHPELVGLLLRR 951
            MSRDP IRAVLVGELRRQVKGWNHAGSGADDDHEAE EKQQRR GLAD GEG T AARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEP AAGLN RFGA  GSG RTA AGEDEEDEVPWPFR LYGENNYEGAAGYAH            SVGG +SGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLE AAASSLREISHH ELVGLLLRR
Sbjct:    1 MSRDPVIRAVLVGELRRQVKGWNHAGSGADDDHEAEGEKQQRRDGLADGGEGATAAARPPPATIVVDPIHLTLTLETLSNVMRASRRDINSSRRRSTAEEPEAAGLNWRFGAGVGSGGRTAVAGEDEEDEVPWPFRFLYGENNYEGAAGYAHDGGNEDDDTITPSVGGVVSGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLEAAAASSLREISHHSELVGLLLRR 237
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BLAST of mRNA_Ecto-sp13_S_contig14497.3457.1 vs. uniprot
Match: D7G609_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G609_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 6.030e-29
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 CNFHIATATVGEAVNLTSLRELLDLVHHSVLAVGPTALPKLLDADVIGIALRGAESPNTHVAVVC 195
            CNFHIATATVGEAVNLTSL+ELLDLVHHSVLAVGPTALPKLLDA VIGIALRGAESPNTHV+  C
Sbjct:  169 CNFHIATATVGEAVNLTSLQELLDLVHHSVLAVGPTALPKLLDAGVIGIALRGAESPNTHVSKGC 233
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14497.3457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JGV5_9PHAE1.390e-18991.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G608_ECTSI1.510e-12687.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G609_ECTSI6.030e-2992.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14497contigEcto-sp13_S_contig14497:1..3106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size951
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_004670.1
Cds size951
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462773.6420298-CDS-Ecto-sp13_S_contig14497:0..751681462773.6420298-CDS-Ecto-sp13_S_contig14497:0..75Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14497 1..75 +
1681462773.6556273-CDS-Ecto-sp13_S_contig14497:700..8051681462773.6556273-CDS-Ecto-sp13_S_contig14497:700..805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14497 701..805 +
1681462773.6669729-CDS-Ecto-sp13_S_contig14497:1335..19921681462773.6669729-CDS-Ecto-sp13_S_contig14497:1335..1992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14497 1336..1992 +
1681462773.68403-CDS-Ecto-sp13_S_contig14497:2992..31061681462773.68403-CDS-Ecto-sp13_S_contig14497:2992..3106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14497 2993..3106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14497.3457.1prot_Ecto-sp13_S_contig14497.3457.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14497 1..3106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14497.3457.1

>prot_Ecto-sp13_S_contig14497.3457.1 ID=prot_Ecto-sp13_S_contig14497.3457.1|Name=mRNA_Ecto-sp13_S_contig14497.3457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
CNFHIATATVGEAVNLTSLRELLDLVHHSVLAVGPTALPKLLDADVIGIA
LRGAESPNTHVAVVCYRILTVLSQNKHVAQRMSRDPAIRAVLVGELRRQV
KGWNHAGSGADDDHEAEDEKQQRRGGLADRGEGVTTAARPPPATIVVDPI
HLTLTLETLSNVMRASRRDINSSRRRSTAEEPGAAGLNRRFGARGGSGRR
TAAGEDEEDEVPWPFRSLYGENNYEGAAGYAHGGGNDDDDTIIASVGGGI
SGPWPLDRKLVADIAELMLSAASARDSEGAVARGEDAELGEVLETAAASS
LREISHHPELVGLLLRR
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mRNA from alignment at Ecto-sp13_S_contig14497:1..3106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14497.3457.1 ID=mRNA_Ecto-sp13_S_contig14497.3457.1|Name=mRNA_Ecto-sp13_S_contig14497.3457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3106bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14497:1..3106+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAACTTTCACATCGCGACGGCTACCGTCGGAGAGGCAGTAAACCTGAC
TTCCCTCCGAGAGCTCCTTGACTTGGTGAGAGCTGCTCTGTGACGGCTTT
TGGCTAGGACTGGAAACCGCTCGACTTAAATTTTGCTTCTCTGCAAGCCG
TCGGCACCATTTTATCACGCCCTTGTCTTGCTGGGACAGCGGAGAAAGAT
AAGAGTATGAAAAACAACGTGTGTTCTGCCCATGTTGTTCGGTGTCCTAA
TCGTTGGACCTTAGTTCGTTTCTCTGCAAGCTGTGCGTTCTCTTTTTCAA
CCATGCCCTTTTCTTGTTGAGACAGCGAAGAATGTACGCAACGCATGTTT
TCTGTCTACATCGTTCGATGTTATTTTAGGGTCGGATTCACCGATTTTGT
TTTCTCAGAACAGAGGACGACTCGCCCTGTTGGATTCGGGATTCTCAGAT
TCCCGTGTCCCCGGCTGCTCGTGCAATGCATACATTATTTTTCGTCAACC
GCTCCGTAGTACAAGGATGGAGAATCTCGTGAAGGAACCGGACGCGTCTA
GCAAATGACGGAAATGTACCAGGTGCATCTGAATCCGCGTCCCGTATCTC
GCGTGAACGCCCACCATACAAGAACATGGTTCCTGTTGACGAGCGTCCTC
CTGCTTGTGCAACGTGATTGGTTATTGCTCGATTGCATTTTGCACCAAAG
GTGCACCACTCGGTCCTCGCCGTAGGCCCCACCGCTCTGCCGAAGCTGTT
GGACGCGGACGTCATCGGGATCGCGCTGAGGGGTGCCGAGTCCCCGAACA
CACACGTAAGCAAGGGGTTTGAGTGAGAAAGCCTGTCCTCGTACGGCATT
AGGTGGGTCTGACCGTGCGTTTCACCTACCCCCCCCTTCCGATGGTTGGG
AGCATGCATCGCTTGTCGAGGCACTCGCTCACCCGTGGTCTCGCCTTGAA
GAAGGACCACATTCGGGAAACATTTCTGCATGGAGATTCATCAATCACCA
ATGGCGTCGTAGGCGAAGGCGTTCGCGTCGTGCATGGCCGTGCGAAGTCA
GCGAAGCACAAACGTACTCTCGTGTTGGAGTCGGGTTCGTCGCATGATGG
GTGGAATTTTGGGGGGACTTTGACCGTGCGATTTTTTTTTTGTTCCTTGT
CCTCGCAGTTTTTGCCCTGCATCGTCATGAACGGCATGCCATTGCCCTGC
CACCGTCCGTATCGCGCACAGCGGCTGCGTGCAGAATAACGTGGCGGTGC
GGCTGCCGTACAACATCCCGCGTAGCTCAATCAACCTCCTGCGCCGTTCT
TGGAACCGCCGCCCCTGGCGCAACCCCGCACCCAGGTCGCAGTGGTGTGC
TACAGGATCCTGACCGTGCTGTCCCAGAACAAGCATGTCGCGCAAAGGAT
GTCGAGAGACCCCGCCATCAGAGCCGTGCTTGTCGGCGAGCTGCGTCGTC
AAGTCAAGGGCTGGAACCACGCCGGATCGGGAGCGGATGATGATCATGAG
GCTGAGGACGAGAAGCAGCAGCGGCGGGGTGGGCTGGCGGACAGAGGGGA
GGGGGTAACGACAGCGGCGAGGCCACCGCCGGCGACGATCGTGGTGGACC
CGATCCACCTCACGCTCACGCTCGAGACGCTCAGCAACGTCATGCGCGCA
TCGCGGCGGGACATCAACAGCAGTAGGAGAAGAAGCACAGCGGAAGAGCC
GGGAGCGGCGGGATTGAATCGGAGATTTGGAGCAAGGGGCGGTAGTGGCA
GGCGGACAGCAGCGGGAGAGGACGAGGAGGATGAGGTCCCGTGGCCTTTC
CGCTCCCTGTACGGAGAGAACAACTACGAGGGAGCAGCGGGCTATGCGCA
CGGCGGGGGAAATGACGATGATGACACCATCATCGCTAGCGTAGGGGGGG
GCATCTCCGGTCCTTGGCCGCTGGATCGCAAGCTCGTGGCGGATATTGCG
GAGCTGATGCTGAGCGCGGCGAGCGCGAGAGATAGCGAAGGGGTGAGTCT
GAGGCTGGGACCAGGAGAACTATTGAGACGGGGATCTGGTGCTAGAGTTG
GAGGTTTGGAGCTGTGCCGAGCCAAGAGAGACCGGAACATGTCAGGGATC
TGGTGTTGAGAGTTGGAGATTTGGAGCCGTGCCGAGCCAAGGGAGACCGG
AACTTTTTTTTTTAGGGCTGCTCATGGCGCACTTGACTCAGGACCTTGTT
GGGCTTTAACGAGTGGAAAGCACGCTGGCCCACGAACGGCAGAAGCAGGA
TCGCCCTTCTACAAACACATACCTGGCATCATGCACGAAACCCCTACTAT
AGATCTTCGCAGATCCGTACAATATCTATTGCTGATTATAAACCTAACAC
ACTAGATGGGACTCGAGAAACGACTTAAACGTGATCCAGGGGTTGACTAT
CATCGCTGAGGCAGACATGGCCGTTGTCCCAATGGAGTGAAACAGCCTGG
CGCAAGCCTGGGCAGAGTAGGGCAGTAGGCCTTGGCCTTGCCACCGTTTC
GTGTTTCAAGCTACGCGGCGCTGTCGTGAGAGCGTTCGCGCGTTATGAAG
CAGAAACCAAAGACATTTGTCCTGAAGCTTGTGAGGCGTAGGTGTAGTGG
CCTCGGAAAAAATGTATATACGAAGTTTTATTTGTTTTTTTCCTGCAGGG
GGGTGATGTCTTCCATTGGAACCCTCGAGTCGCCCGGCCCGGTTTGTCGC
CCGCTCGGAGGGCCAGCATTGCTCAGCAGCTAGGACCATTGGAGCCCAAC
CCGTTTGCAAGTTGGTAGACAACATGTGGTGTAATTCAAATCTCAGACCA
GTCGCCAGCGAAAGAATACACTGCAGCATCAGCGCTACTATTAAGTTCGA
GAGGGCATCACGTCGTTGTTCTCTTTTGCTATTCCCGTGACTGACCAAGG
TGGGAACGGTTCCTGTATTGCCCCCGCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCTCCCGTGCCATGCACGCAATCGACCACCACATCGAAGGCGGTGGC
GCGCGGAGAGGACGCGGAGCTGGGGGAAGTCCTGGAGACGGCGGCGGCGT
CCAGTCTTCGAGAGATCAGCCACCACCCGGAGTTGGTGGGGCTGTTGCTT
CGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14497:1..3106+

>mRNA_Ecto-sp13_S_contig14497.3457.1 ID=mRNA_Ecto-sp13_S_contig14497.3457.1|Name=mRNA_Ecto-sp13_S_contig14497.3457.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=951bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14497:1..3106+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCAACTTTCACATCGCGACGGCTACCGTCGGAGAGGCAGTAAACCTGAC
TTCCCTCCGAGAGCTCCTTGACTTGGTGCACCACTCGGTCCTCGCCGTAG
GCCCCACCGCTCTGCCGAAGCTGTTGGACGCGGACGTCATCGGGATCGCG
CTGAGGGGTGCCGAGTCCCCGAACACACACGTCGCAGTGGTGTGCTACAG
GATCCTGACCGTGCTGTCCCAGAACAAGCATGTCGCGCAAAGGATGTCGA
GAGACCCCGCCATCAGAGCCGTGCTTGTCGGCGAGCTGCGTCGTCAAGTC
AAGGGCTGGAACCACGCCGGATCGGGAGCGGATGATGATCATGAGGCTGA
GGACGAGAAGCAGCAGCGGCGGGGTGGGCTGGCGGACAGAGGGGAGGGGG
TAACGACAGCGGCGAGGCCACCGCCGGCGACGATCGTGGTGGACCCGATC
CACCTCACGCTCACGCTCGAGACGCTCAGCAACGTCATGCGCGCATCGCG
GCGGGACATCAACAGCAGTAGGAGAAGAAGCACAGCGGAAGAGCCGGGAG
CGGCGGGATTGAATCGGAGATTTGGAGCAAGGGGCGGTAGTGGCAGGCGG
ACAGCAGCGGGAGAGGACGAGGAGGATGAGGTCCCGTGGCCTTTCCGCTC
CCTGTACGGAGAGAACAACTACGAGGGAGCAGCGGGCTATGCGCACGGCG
GGGGAAATGACGATGATGACACCATCATCGCTAGCGTAGGGGGGGGCATC
TCCGGTCCTTGGCCGCTGGATCGCAAGCTCGTGGCGGATATTGCGGAGCT
GATGCTGAGCGCGGCGAGCGCGAGAGATAGCGAAGGGGCGGTGGCGCGCG
GAGAGGACGCGGAGCTGGGGGAAGTCCTGGAGACGGCGGCGGCGTCCAGT
CTTCGAGAGATCAGCCACCACCCGGAGTTGGTGGGGCTGTTGCTTCGAAG
G
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