mRNA_Ecto-sp13_S_contig14477.3444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14477.3444.1
Unique NamemRNA_Ecto-sp13_S_contig14477.3444.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 377 bits (968), Expect = 5.150e-129
Identity = 183/268 (68.28%), Postives = 211/268 (78.73%), Query Frame = 1
Query:   13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKLVYR 816
            M +R+RKL ++A  SCFDLS I+E VRT+ P LIYLGIWY DG V+VY Q AERMS ++LTKALE HMVI  I+ Y    GELQEEWR+KPVR  K I +K DT AVFV+PLG+ESL H++  ++  LL  LPG DVFYKFGLKLYSL QNINFRARKGDKN RVCCSR GW+TVP++EAYDEILQIL EKT+E V  F   IP YY  HF+MH+DSILAYKDS +PEQRKLY R RNK+LN IAVSVTDNL R+  W  KKRKLVY+
Sbjct:    1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYK 268          
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 378 bits (970), Expect = 7.390e-128
Identity = 183/272 (67.28%), Postives = 216/272 (79.41%), Query Frame = 1
Query:    1 IVVRMAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKLVYR 816
            ++ +MA+R+RKL ++A  SCFDLS I+E VRT+ P LIYLGIWY DG V+VY Q AERMS  +LTKALE HMVI  I+ Y    GELQEEWR+KPVR  K + VK DT AVFV+PLG+ESL+H+T+ ++  LL  LPG DVFYKFGLKLYSL QNINFRARKGDKN RVCCSR GW+TVP++EAYDEILQIL EKT+E V  F   IP YY  HF+M++DSILA+KDS +PEQRKLY R RNK+LN IAVSVTDNL R+  W  KKRKLVY+
Sbjct:   95 VIGKMALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYK 366          
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 8.140e-109
Identity = 169/271 (62.36%), Postives = 196/271 (72.32%), Query Frame = 1
Query:   13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKLVYRPPP 825
            MA+R+RKL ++A  SCFDL  I+E VRT+ P LIYLGIWY DG V+VYAQ AERMS ++L KALE H+V TDI+ +     E QEEWR+KPV   K I VK +T AVFVHPLG+ESL+H T++FI  LL  LPG DVF KFGLKLYSL QNINFR RKGDKN RVCCSR GW+TVP+EEAYDEILQIL +KT+E V                     ILAYKDS  PEQRKLY   R ++LN IAVSVTDN+ R+S W  KKRKLVY+ PP
Sbjct:    1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLY--ERRRILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250          
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 2.290e-69
Identity = 130/275 (47.27%), Postives = 178/275 (64.73%), Query Frame = 1
Query:   13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSH---VILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKK---RKLVYRP 819
            MA R RKL ++AEPSC DL I++E V    P L+ L I ++DG V  Y Q+ E +S      LT+  E+HM +T I+PYS + GELQEEWR K  RA  S     DT  + V+PLGEESL+H+T E++  LL+      VF+KFGLKLYSL QN+NFR RK   +VRV  +++ W+TV K+EAYDEIL +L EKT E V  +   +  + ++HF M    +L  +DS++PE++KLY + RNK L+ IAVSV   LS+L  W GK+   R +++ P
Sbjct:    1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTLRSVLFTP 273          
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 218 bits (554), Expect = 1.630e-67
Identity = 130/256 (50.78%), Postives = 156/256 (60.94%), Query Frame = 1
Query:   13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLS 780
            +AV  RKLR+QA+PSCFDLS ++E VRT+YPNLIYLGIW++DGSV+VY QSAERMS + LT AL++HMVIT+IAPYS             P+    + +             G+  LE     FI  LL TL G DVFYKFG+KLY L+QN+NFRARKGDK V                                    SGV+P  +I HFE  A+SIL  KDS +PEQRKLY R RNK+LN IAV+VTDNLSRLS
Sbjct:    6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSI------------PLLGSCNRS-------------GDPRLE-----FIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLS 195          
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 3.000e-63
Identity = 124/259 (47.88%), Postives = 169/259 (65.25%), Query Frame = 1
Query:   31 KLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSH---VILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKK 798
            KL ++AEPSC DL I++E V    P L+ L I ++DG V  Y Q+ E +S      LT+  E+HM +T I+PYS + GELQEEWR K  RA  S     DT  + V+PLGEESL+H+T E++  LL+      VF+KFGLKLYSL QN+NFR RK   +VRV  +++ W+TV K+EAYDEIL +L EKT E V  +   +  + ++HF M    +L  +DS +PE++KLY ++RNK L+ IAVSV   LS+L  W GK+
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391          
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-15
Identity = 70/221 (31.67%), Postives = 110/221 (49.77%), Query Frame = 1
Query:  199 ALEEHMVITDIAPYSTVRGELQEE--W--RSKPV----------RAQKSITVKDDTAA--VFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRA--RKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKL 807
            ALEE+M          + G L+E+  W  + K V          RA K+    + TA   V V+P+G+ESL+H+T E I+ LL    GPDV ++FG KLY+L++N+NF+   + G  + R+    + WVT  K   +  +L+ L +  +E V  +   IP   + +FE+    I    D  L E   +Y +      N +A ++ + L R+    GKK KL
Sbjct:   70 ALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLXGGSRAHKNRKRAEKTAVTLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LP42_ECTSI5.150e-12968.28EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN59_ESV1K7.390e-12867.28EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K0V6_9PHAE8.140e-10962.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE2.290e-6947.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K135_9PHAE1.630e-6750.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH58_9PHAE3.000e-6347.88Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JWA4_9PHAE1.600e-1531.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14477contigEcto-sp13_S_contig14477:2521..3405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size885
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-231
Ec32 orthologEc-06_006690.1
Cds size837
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.6399708-UTR-Ecto-sp13_S_contig14477:2520..25321681462772.6399708-UTR-Ecto-sp13_S_contig14477:2520..2532Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14477 2521..2532 +
1681462772.6644375-UTR-Ecto-sp13_S_contig14477:3369..34051681462772.6644375-UTR-Ecto-sp13_S_contig14477:3369..3405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14477 3370..3405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.6560776-CDS-Ecto-sp13_S_contig14477:2532..33691681462772.6560776-CDS-Ecto-sp13_S_contig14477:2532..3369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14477 2533..3369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14477.3444.1prot_Ecto-sp13_S_contig14477.3444.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14477 2533..3369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14477.3444.1

>prot_Ecto-sp13_S_contig14477.3444.1 ID=prot_Ecto-sp13_S_contig14477.3444.1|Name=mRNA_Ecto-sp13_S_contig14477.3444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQ
SAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITV
KDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQ
NINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFS
GVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTD
NLSRLSLWGGKKRKLVYRPPPPAKSARA*
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mRNA from alignment at Ecto-sp13_S_contig14477:2521..3405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14477.3444.1 ID=mRNA_Ecto-sp13_S_contig14477.3444.1|Name=mRNA_Ecto-sp13_S_contig14477.3444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14477:2521..3405+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTGTAGTTCGAATGGCGGTGCGTGACAGGAAACTCAGGCTGCAGGCCGA ACCATCGTGCTTTGATTTGAGCATCATAGTGGAGCTTGTTCGTACGAAGT ATCCGAATCTTATCTACTTGGGCATATGGTACTATGACGGCAGCGTGCAT GTGTACGCGCAGAGCGCGGAGCGCATGTCACATGTCATTCTCACCAAAGC CCTTGAGGAACATATGGTTATCACCGACATCGCACCGTATTCTACCGTCA GGGGCGAGCTACAGGAGGAGTGGCGTTCCAAGCCAGTTCGTGCACAAAAG AGCATTACCGTCAAGGACGACACCGCCGCCGTGTTTGTCCACCCTCTGGG CGAAGAGTCGCTGGAACATGTCACCAACGAGTTCATAAAAGCTCTGCTGG AAACCCTTCCGGGGCCCGACGTGTTCTACAAATTTGGGTTAAAGCTGTAC TCGTTACAGCAAAACATCAATTTCAGGGCGCGCAAAGGAGACAAAAATGT CCGCGTATGCTGTAGCCGTAACGGATGGGTCACCGTGCCAAAGGAGGAAG CATACGATGAGATACTGCAAATCCTAACCGAGAAGACCCAGGAATGTGTA GGCGCGTTTAGCGGAGTCATTCCACCATACTACATCAGTCATTTTGAGAT GCACGCAGACAGTATCCTTGCCTACAAGGACTCCACTTTACCCGAGCAGA GAAAGCTATATCTGAGGAACAGGAACAAGTTGCTCAATCGCATCGCTGTT AGCGTGACCGACAACTTGAGTCGGCTGAGCCTCTGGGGCGGAAAGAAGCG CAAGCTTGTCTACAGACCGCCACCACCGGCCAAGTCTGCCCGTGCATGAT GTGTTGCTTGGAACTTGCCGAATGCCACACACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14477:2521..3405+

>mRNA_Ecto-sp13_S_contig14477.3444.1 ID=mRNA_Ecto-sp13_S_contig14477.3444.1|Name=mRNA_Ecto-sp13_S_contig14477.3444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14477:2521..3405+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTGCGTGACAGGAAACTCAGGCTGCAGGCCGAACCATCGTGCTT
TGATTTGAGCATCATAGTGGAGCTTGTTCGTACGAAGTATCCGAATCTTA
TCTACTTGGGCATATGGTACTATGACGGCAGCGTGCATGTGTACGCGCAG
AGCGCGGAGCGCATGTCACATGTCATTCTCACCAAAGCCCTTGAGGAACA
TATGGTTATCACCGACATCGCACCGTATTCTACCGTCAGGGGCGAGCTAC
AGGAGGAGTGGCGTTCCAAGCCAGTTCGTGCACAAAAGAGCATTACCGTC
AAGGACGACACCGCCGCCGTGTTTGTCCACCCTCTGGGCGAAGAGTCGCT
GGAACATGTCACCAACGAGTTCATAAAAGCTCTGCTGGAAACCCTTCCGG
GGCCCGACGTGTTCTACAAATTTGGGTTAAAGCTGTACTCGTTACAGCAA
AACATCAATTTCAGGGCGCGCAAAGGAGACAAAAATGTCCGCGTATGCTG
TAGCCGTAACGGATGGGTCACCGTGCCAAAGGAGGAAGCATACGATGAGA
TACTGCAAATCCTAACCGAGAAGACCCAGGAATGTGTAGGCGCGTTTAGC
GGAGTCATTCCACCATACTACATCAGTCATTTTGAGATGCACGCAGACAG
TATCCTTGCCTACAAGGACTCCACTTTACCCGAGCAGAGAAAGCTATATC
TGAGGAACAGGAACAAGTTGCTCAATCGCATCGCTGTTAGCGTGACCGAC
AACTTGAGTCGGCTGAGCCTCTGGGGCGGAAAGAAGCGCAAGCTTGTCTA
CAGACCGCCACCACCGGCCAAGTCTGCCCGTGCATGA
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