mRNA_Ecto-sp13_S_contig14477.3444.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI) HSP 1 Score: 377 bits (968), Expect = 5.150e-129 Identity = 183/268 (68.28%), Postives = 211/268 (78.73%), Query Frame = 1
Query: 13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKLVYR 816
M +R+RKL ++A SCFDLS I+E VRT+ P LIYLGIWY DG V+VY Q AERMS ++LTKALE HMVI I+ Y GELQEEWR+KPVR K I +K DT AVFV+PLG+ESL H++ ++ LL LPG DVFYKFGLKLYSL QNINFRARKGDKN RVCCSR GW+TVP++EAYDEILQIL EKT+E V F IP YY HF+MH+DSILAYKDS +PEQRKLY R RNK+LN IAVSVTDNL R+ W KKRKLVY+
Sbjct: 1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALEGHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYK 268
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K) HSP 1 Score: 378 bits (970), Expect = 7.390e-128 Identity = 183/272 (67.28%), Postives = 216/272 (79.41%), Query Frame = 1
Query: 1 IVVRMAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKLVYR 816
++ +MA+R+RKL ++A SCFDLS I+E VRT+ P LIYLGIWY DG V+VY Q AERMS +LTKALE HMVI I+ Y GELQEEWR+KPVR K + VK DT AVFV+PLG+ESL+H+T+ ++ LL LPG DVFYKFGLKLYSL QNINFRARKGDKN RVCCSR GW+TVP++EAYDEILQIL EKT+E V F IP YY HF+M++DSILA+KDS +PEQRKLY R RNK+LN IAVSVTDNL R+ W KKRKLVY+
Sbjct: 95 VIGKMALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALEGHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYK 366
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE) HSP 1 Score: 325 bits (833), Expect = 8.140e-109 Identity = 169/271 (62.36%), Postives = 196/271 (72.32%), Query Frame = 1
Query: 13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKLVYRPPP 825
MA+R+RKL ++A SCFDL I+E VRT+ P LIYLGIWY DG V+VYAQ AERMS ++L KALE H+V TDI+ + E QEEWR+KPV K I VK +T AVFVHPLG+ESL+H T++FI LL LPG DVF KFGLKLYSL QNINFR RKGDKN RVCCSR GW+TVP+EEAYDEILQIL +KT+E V ILAYKDS PEQRKLY R ++LN IAVSVTDN+ R+S W KKRKLVY+ PP
Sbjct: 1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALEGHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLY--ERRRILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE) HSP 1 Score: 234 bits (596), Expect = 2.290e-69 Identity = 130/275 (47.27%), Postives = 178/275 (64.73%), Query Frame = 1
Query: 13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSH---VILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKK---RKLVYRP 819
MA R RKL ++AEPSC DL I++E V P L+ L I ++DG V Y Q+ E +S LT+ E+HM +T I+PYS + GELQEEWR K RA S DT + V+PLGEESL+H+T E++ LL+ VF+KFGLKLYSL QN+NFR RK +VRV +++ W+TV K+EAYDEIL +L EKT E V + + + ++HF M +L +DS++PE++KLY + RNK L+ IAVSV LS+L W GK+ R +++ P
Sbjct: 1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKRVTLRSVLFTP 273
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE) HSP 1 Score: 218 bits (554), Expect = 1.630e-67 Identity = 130/256 (50.78%), Postives = 156/256 (60.94%), Query Frame = 1
Query: 13 MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSHVILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLS 780
+AV RKLR+QA+PSCFDLS ++E VRT+YPNLIYLGIW++DGSV+VY QSAERMS + LT AL++HMVIT+IAPYS P+ + + G+ LE FI LL TL G DVFYKFG+KLY L+QN+NFRARKGDK V SGV+P +I HFE A+SIL KDS +PEQRKLY R RNK+LN IAV+VTDNLSRLS
Sbjct: 6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSALKDHMVITNIAPYSI------------PLLGSCNRS-------------GDPRLE-----FIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRLS 195
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE) HSP 1 Score: 226 bits (575), Expect = 3.000e-63 Identity = 124/259 (47.88%), Postives = 169/259 (65.25%), Query Frame = 1
Query: 31 KLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQSAERMSH---VILTKALEEHMVITDIAPYSTVRGELQEEWRSKPVRAQKSITVKDDTAAVFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRARKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKK 798
KL ++AEPSC DL I++E V P L+ L I ++DG V Y Q+ E +S LT+ E+HM +T I+PYS + GELQEEWR K RA S DT + V+PLGEESL+H+T E++ LL+ VF+KFGLKLYSL QN+NFR RK +VRV +++ W+TV K+EAYDEIL +L EKT E V + + + ++HF M +L +DS +PE++KLY ++RNK L+ IAVSV LS+L W GK+
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSIIEGELQEEWRKKRKRAS-STGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVR-TKDKWITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 1.600e-15 Identity = 70/221 (31.67%), Postives = 110/221 (49.77%), Query Frame = 1
Query: 199 ALEEHMVITDIAPYSTVRGELQEE--W--RSKPV----------RAQKSITVKDDTAA--VFVHPLGEESLEHVTNEFIKALLETLPGPDVFYKFGLKLYSLQQNINFRA--RKGDKNVRVCCSRNGWVTVPKEEAYDEILQILTEKTQECVGAFSGVIPPYYISHFEMHADSILAYKDSTLPEQRKLYLRNRNKLLNRIAVSVTDNLSRLSLWGGKKRKL 807
ALEE+M + G L+E+ W + K V RA K+ + TA V V+P+G+ESL+H+T E I+ LL GPDV ++FG KLY+L++N+NF+ + G + R+ + WVT K + +L+ L + +E V + IP + +FE+ I D L E +Y + N +A ++ + L R+ GKK KL
Sbjct: 70 ALEENMNFKTDVKSGFISGRLEEDSAWVTQRKTVGFSMLLXGGSRAHKNRKRAEKTAVTLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFD--LQEDMPVYRKFIRDGFNVLASNMAEKLRRIERDTGKKLKL 287 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14477.3444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14477.3444.1 >prot_Ecto-sp13_S_contig14477.3444.1 ID=prot_Ecto-sp13_S_contig14477.3444.1|Name=mRNA_Ecto-sp13_S_contig14477.3444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp MAVRDRKLRLQAEPSCFDLSIIVELVRTKYPNLIYLGIWYYDGSVHVYAQback to top mRNA from alignment at Ecto-sp13_S_contig14477:2521..3405+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14477.3444.1 ID=mRNA_Ecto-sp13_S_contig14477.3444.1|Name=mRNA_Ecto-sp13_S_contig14477.3444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14477:2521..3405+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14477:2521..3405+ >mRNA_Ecto-sp13_S_contig14477.3444.1 ID=mRNA_Ecto-sp13_S_contig14477.3444.1|Name=mRNA_Ecto-sp13_S_contig14477.3444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14477:2521..3405+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |