mRNA_Ecto-sp13_S_contig14464.3436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE) HSP 1 Score: 449 bits (1155), Expect = 6.570e-156 Identity = 225/230 (97.83%), Postives = 227/230 (98.70%), Query Frame = 1
Query: 1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTAASCK 690
NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKAT LVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEG VVDG VR+RGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTA+SCK
Sbjct: 98 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGSVVDGSVRRRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTASSCK 327
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI) HSP 1 Score: 451 bits (1159), Expect = 9.950e-154 Identity = 225/230 (97.83%), Postives = 227/230 (98.70%), Query Frame = 1
Query: 1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTAASCK 690
NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKAT LVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGP+VDGR RKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVS+ DTSRTMVFTNTAASCK
Sbjct: 298 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPIVDGRGRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSDADTSRTMVFTNTAASCK 527
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A836CM84_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM84_9STRA) HSP 1 Score: 156 bits (394), Expect = 2.250e-40 Identity = 115/360 (31.94%), Postives = 153/360 (42.50%), Query Frame = 1
Query: 1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALN------------ADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMV--------EEGPVVDGRVRK-----------------------------------------------------------------------------RGIDKT-------------------QYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQ---AVIDLLR-----------DTVSETDTSRTMVFTNTAASCK 690
NAR W MFPD ++L PN+ELC+QV V +L+ L A T + A YG+S++YP+S +PAP +LVCTP+FL Y +++IPLF +A LV+DEADMLM+G Y + L DIL FRRA RV + P D R G+ +T QY+LAAATLP+YGLKSV+ ++RAFP A +I HMHR HPA++Q +V V G A+++ LR D + R MVF NTAAS +
Sbjct: 63 NARSWGMFPDAIILTPNRELCEQVRGVAAQLLEELGNPLRGEERAHEAAVLNTHTSIEALYGASFDYPYSEARPAPQLLVCTPAFLAGYGALRSIPLFVRARALVIDEADMLMDGDYARLLGDILTGFRRAARVDAALLPPCRRKPAPAYDADARSGGSSGGATHAEXXXXXXXXXXXXXXGDGEAGGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVAAGGXXXXXXXSGVRRTWRGPRAAAGASGGEVPAGAQYILAAATLPSYGLKSVEALVRRAFPRATRITADHMHRQHPALRQEWVRVEGPPGPSAARDVALLEALRAANTAAGIGDDDAAGAAEPLRAMVFCNTAASAR 422
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC) HSP 1 Score: 147 bits (370), Expect = 9.870e-38 Identity = 88/244 (36.07%), Postives = 135/244 (55.33%), Query Frame = 1
Query: 1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTN---MKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVG--GQVFDKIQAVID----LLRDTVSE-----TDTSRTMVFTNTAASCK 690
N M+P VV+VPN+ELCDQV+ + + + L GVT +G +PF+P +PAP +L+CTP FL ++T +K I LF LV+DEAD+L++G Y+K L+ +L FRR+ R + P TQ+++ AATLP G SVD +++R FP A +++ MH+H P +QQ+F+ +G D++ ++D + RD S D +T++F NT S K
Sbjct: 143 NTDRSRMYPRAVVMVPNRELCDQVYRWAQELARPL------GVTTEMVWGGYESWPFTPAQPAPDVLICTPLFLGRFTKGGCVKDISLFQSVDTLVVDEADLLLDGGYKKDLEAVLTVFRRSGR---QGAP-------------TQHIMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFIPIGYDASTRDRLNMLVDKVTEMQRDRASRGGEEAVDVGKTIIFANTVNSAK 364
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK) HSP 1 Score: 136 bits (343), Expect = 1.030e-35 Identity = 84/202 (41.58%), Postives = 120/202 (59.41%), Query Frame = 1
Query: 127 VTAAAKYGSSYEYP-FSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGID-------KTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSE------TDTSRTMVFTNTAASCK 690
V AA G+ +P F P +PAP++LVCTP+FL + + +P+F LVLDEADML++G Y QLD ++VA +R R+ GR + + + Q VLAAATLPTYGLKSVD Y+++ F A ++ MHRHHP + Q+F+EVGG + +KI+A++ L + +E T R MVF NT A+ +
Sbjct: 3 VAEAALGGAPPGWPYFRPGRPAPALLVCTPAFLAPFD--RHLPVFGHLRALVLDEADMLLDGGYLAQLDKVMVALKRVGRM----AETARGRYQDAYAEGALYTPARCQRVLAAATLPTYGLKSVDAYVRKHFKGAARVGTGLMHRHHPRLHQDFIEVGGSLGEKIEALLAYLDEEAAEGRGAGAPGTMRAMVFCNTVAAAE 198
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S2XFB3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFB3_9EUKA) HSP 1 Score: 132 bits (331), Expect = 2.910e-33 Identity = 76/178 (42.70%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 148 GSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLME-GSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTA 678
G ++PF P PAP ILVCTP L ++ ++ + LF LV+DEADML++ GSY +++ILVAF+RA R M P TQ+VL+AAT+P GLKSVD+ I++ FPNA ++ MH+HHP+ QQ+FV+ DK+ V++ L D +T+VF NTA
Sbjct: 5 GVERDWPFRPRLPAPDILVCTPKMLRQF--VRDLDLFAGIETLVIDEADMLLDRGSYENDINEILVAFKRATRTMATNVP-------------TQFVLSAATIPNMGLKSVDRSIEKRFPNAEHVRAKLMHKHHPSTQQDFVKTTKDFDDKVSKVLESLEK--HSKDNPKTIVFANTA 165
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.780e-31 Identity = 83/208 (39.90%), Postives = 121/208 (58.17%), Query Frame = 1
Query: 4 ARGWPM-FPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSP-NKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLL 621
A +P P +VLVPN +L +QV + +L +G V A GS +P+ ++ AP +LVCTP+ L + + + LF + ILV+DEADML+EG Y + L+ ILVAF+RAD++ R TQYVLAAATLP+YGLKSV++ +K+ FP+A ++ MH+HHP + Q FVE + KI ++ +L
Sbjct: 257 AEDYPWEAPFAIVLVPNGQLSEQVLRMAGEVLG--QGEGEENVRVEALKGSVDVWPYRVGSRAAPDVLVCTPATLSSFD--REVNLFGEVNILVVDEADMLLEGDYGRHLERILVAFKRADKLHTA-----------RSEPLTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVL 449
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S3H293_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H293_9STRA) HSP 1 Score: 119 bits (299), Expect = 3.540e-28 Identity = 72/190 (37.89%), Postives = 111/190 (58.42%), Query Frame = 1
Query: 16 PMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAI---PLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEV 576
P +P ++L P KELC Q+ + + +K LN G+ A + + ++P+ P+ LVCTP +L + I LF LVLDEADML++GSY K ++ IL A + R ++ EG V +V ++ TQ+VL+AAT+P++GLKSV YI++ FP A+ + +MH HHPAI Q ++ +
Sbjct: 134 PNYPCGIILAPTKELCWQIEDMAQATVKGLNDQGLRFRLEAVTEATG-RWKYAPDD-VPTFLVCTPKYLANFIQGPIIHEEALFESIRYLVLDEADMLLDGSYVKDVEKILDALKVVRRGLIREGLV---KVHEQ---VTQFVLSAATIPSFGLKSVKAYIQKRFPRAKIVWTENMHAHHPAIAQEYIMI 315
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA) HSP 1 Score: 106 bits (265), Expect = 6.520e-24 Identity = 68/173 (39.31%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 202 VCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEV-------------GGQVFD-KIQAVIDLLRDTVSETDTSRTMVFTNTA 678
VCTP+F+ + + K + LF +VLDEADML++G Y Q+D+ILVA +R R+ + PVVD TQ +L+AAT+PTYGLKSVD+ + + FPNA +++ +HR P ++ ++VEV G + F + + +LLR RTMVF NTA
Sbjct: 1 VCTPAFMARQS--KNLHLFDFLEAIVLDEADMLLDGGYLNQVDEILVARKRILRMRQQHEPVVDRH--------TQVILSAATIPTYGLKSVDKLVAKRFPNAARVENDLLHRTQPQLEHHWVEVESMGDEREGGATVGSRAFAARCLQLEELLRPATPSDPIPRTMVFANTA 163
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A2C6LGE9_9APIC (Dead deah box helicase domain-containing protein (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LGE9_9APIC) HSP 1 Score: 103 bits (257), Expect = 8.830e-22 Identity = 74/225 (32.89%), Postives = 118/225 (52.44%), Query Frame = 1
Query: 25 PDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNK--PAPSILVCTPSFLHKY---TNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEV--GGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTA 678
P V++VP +EL QV + ++ + + T +TA G+ +PF +P ++VCTPS L + T K++ F + ++VLDEADML++G YR+ +D I AFR+AD+ + E ++R +TQY+ AAAT+P G KSV + I P A +H+H + Q F+EV G D++ ++ LR+ + M+F NTA
Sbjct: 298 PYAVIIVPTRELALQVVAWVRRLCRK------TTITAQLMLGTYTRWPFGTLALPTSPDLVVCTPSVLAPFARGTKTKSLGPFREIQVVVLDEADMLLDGGYRESMDAIFTAFRKADQQLARE--------KRR---RTQYIFAAATIPDRGPKSVRKTITSLCPKATFFYTRSLHQHKEQLAQEFIEVPPGASEEDRMALLLGKLRELSGN---EKVMIFCNTA 502 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14464.3436.1 >prot_Ecto-sp13_S_contig14464.3436.1 ID=prot_Ecto-sp13_S_contig14464.3436.1|Name=mRNA_Ecto-sp13_S_contig14464.3436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp MFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPback to top mRNA from alignment at Ecto-sp13_S_contig14464:322..4410- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14464.3436.1 ID=mRNA_Ecto-sp13_S_contig14464.3436.1|Name=mRNA_Ecto-sp13_S_contig14464.3436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14464:322..4410- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14464:322..4410- >mRNA_Ecto-sp13_S_contig14464.3436.1 ID=mRNA_Ecto-sp13_S_contig14464.3436.1|Name=mRNA_Ecto-sp13_S_contig14464.3436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14464:322..4410- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |