mRNA_Ecto-sp13_S_contig14464.3436.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14464.3436.1
Unique NamemRNA_Ecto-sp13_S_contig14464.3436.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A6H5KBP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBP8_9PHAE)

HSP 1 Score: 449 bits (1155), Expect = 6.570e-156
Identity = 225/230 (97.83%), Postives = 227/230 (98.70%), Query Frame = 1
Query:    1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTAASCK 690
            NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKAT LVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEG VVDG VR+RGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTA+SCK
Sbjct:   98 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGSVVDGSVRRRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTASSCK 327          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: D7FR69_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR69_ECTSI)

HSP 1 Score: 451 bits (1159), Expect = 9.950e-154
Identity = 225/230 (97.83%), Postives = 227/230 (98.70%), Query Frame = 1
Query:    1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTAASCK 690
            NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKAT LVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGP+VDGR RKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVS+ DTSRTMVFTNTAASCK
Sbjct:  298 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATTLVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPIVDGRGRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSDADTSRTMVFTNTAASCK 527          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A836CM84_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM84_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.250e-40
Identity = 115/360 (31.94%), Postives = 153/360 (42.50%), Query Frame = 1
Query:    1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALN------------ADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMV--------EEGPVVDGRVRK-----------------------------------------------------------------------------RGIDKT-------------------QYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQ---AVIDLLR-----------DTVSETDTSRTMVFTNTAASCK 690
            NAR W MFPD ++L PN+ELC+QV  V   +L+ L             A   T  +  A YG+S++YP+S  +PAP +LVCTP+FL  Y  +++IPLF +A  LV+DEADMLM+G Y + L DIL  FRRA RV          +  P  D   R                                                                               G+ +T                   QY+LAAATLP+YGLKSV+  ++RAFP A +I   HMHR HPA++Q +V V G          A+++ LR           D     +  R MVF NTAAS +
Sbjct:   63 NARSWGMFPDAIILTPNRELCEQVRGVAAQLLEELGNPLRGEERAHEAAVLNTHTSIEALYGASFDYPYSEARPAPQLLVCTPAFLAGYGALRSIPLFVRARALVIDEADMLMDGDYARLLGDILTGFRRAARVDAALLPPCRRKPAPAYDADARSGGSSGGATHAEXXXXXXXXXXXXXXGDGEAGGVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVAAGGXXXXXXXSGVRRTWRGPRAAAGASGGEVPAGAQYILAAATLPSYGLKSVEALVRRAFPRATRITADHMHRQHPALRQEWVRVEGPPGPSAARDVALLEALRAANTAAGIGDDDAAGAAEPLRAMVFCNTAASAR 422          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A0G4ESI9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESI9_VITBC)

HSP 1 Score: 147 bits (370), Expect = 9.870e-38
Identity = 88/244 (36.07%), Postives = 135/244 (55.33%), Query Frame = 1
Query:    1 NARGWPMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTN---MKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVG--GQVFDKIQAVID----LLRDTVSE-----TDTSRTMVFTNTAASCK 690
            N     M+P  VV+VPN+ELCDQV+   + + + L      GVT    +G    +PF+P +PAP +L+CTP FL ++T    +K I LF     LV+DEAD+L++G Y+K L+ +L  FRR+ R   +  P             TQ+++ AATLP  G  SVD +++R FP A +++   MH+H P +QQ+F+ +G      D++  ++D    + RD  S       D  +T++F NT  S K
Sbjct:  143 NTDRSRMYPRAVVMVPNRELCDQVYRWAQELARPL------GVTTEMVWGGYESWPFTPAQPAPDVLICTPLFLGRFTKGGCVKDISLFQSVDTLVVDEADLLLDGGYKKDLEAVLTVFRRSGR---QGAP-------------TQHIMVAATLPNRGSGSVDAFLERRFPEALRVRNSLMHQHLPGMQQDFIPIGYDASTRDRLNMLVDKVTEMQRDRASRGGEEAVDVGKTIIFANTVNSAK 364          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S4D991_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D991_HETAK)

HSP 1 Score: 136 bits (343), Expect = 1.030e-35
Identity = 84/202 (41.58%), Postives = 120/202 (59.41%), Query Frame = 1
Query:  127 VTAAAKYGSSYEYP-FSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGID-------KTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSE------TDTSRTMVFTNTAASCK 690
            V  AA  G+   +P F P +PAP++LVCTP+FL  +   + +P+F     LVLDEADML++G Y  QLD ++VA +R  R+         GR +    +       + Q VLAAATLPTYGLKSVD Y+++ F  A ++    MHRHHP + Q+F+EVGG + +KI+A++  L +  +E        T R MVF NT A+ +
Sbjct:    3 VAEAALGGAPPGWPYFRPGRPAPALLVCTPAFLAPFD--RHLPVFGHLRALVLDEADMLLDGGYLAQLDKVMVALKRVGRM----AETARGRYQDAYAEGALYTPARCQRVLAAATLPTYGLKSVDAYVRKHFKGAARVGTGLMHRHHPRLHQDFIEVGGSLGEKIEALLAYLDEEAAEGRGAGAPGTMRAMVFCNTVAAAE 198          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S2XFB3_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XFB3_9EUKA)

HSP 1 Score: 132 bits (331), Expect = 2.910e-33
Identity = 76/178 (42.70%), Postives = 107/178 (60.11%), Query Frame = 1
Query:  148 GSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLME-GSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTA 678
            G   ++PF P  PAP ILVCTP  L ++  ++ + LF     LV+DEADML++ GSY   +++ILVAF+RA R M    P             TQ+VL+AAT+P  GLKSVD+ I++ FPNA  ++   MH+HHP+ QQ+FV+      DK+  V++ L       D  +T+VF NTA
Sbjct:    5 GVERDWPFRPRLPAPDILVCTPKMLRQF--VRDLDLFAGIETLVIDEADMLLDRGSYENDINEILVAFKRATRTMATNVP-------------TQFVLSAATIPNMGLKSVDRSIEKRFPNAEHVRAKLMHKHHPSTQQDFVKTTKDFDDKVSKVLESLEK--HSKDNPKTIVFANTA 165          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: W7TS57_9STRA (RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS57_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.780e-31
Identity = 83/208 (39.90%), Postives = 121/208 (58.17%), Query Frame = 1
Query:    4 ARGWPM-FPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSP-NKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDLL 621
            A  +P   P  +VLVPN +L +QV  +   +L     +G   V   A  GS   +P+   ++ AP +LVCTP+ L  +   + + LF +  ILV+DEADML+EG Y + L+ ILVAF+RAD++              R    TQYVLAAATLP+YGLKSV++ +K+ FP+A ++    MH+HHP + Q FVE    +  KI  ++ +L
Sbjct:  257 AEDYPWEAPFAIVLVPNGQLSEQVLRMAGEVLG--QGEGEENVRVEALKGSVDVWPYRVGSRAAPDVLVCTPATLSSFD--REVNLFGEVNILVVDEADMLLEGDYGRHLERILVAFKRADKLHTA-----------RSEPLTQYVLAAATLPSYGLKSVEELVKKRFPSAVRVHTDLMHKHHPQLTQVFVEAPEDLEGKIAMLLQVL 449          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S3H293_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H293_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.540e-28
Identity = 72/190 (37.89%), Postives = 111/190 (58.42%), Query Frame = 1
Query:   16 PMFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNKPAPSILVCTPSFLHKYTNMKAI---PLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEV 576
            P +P  ++L P KELC Q+  + +  +K LN  G+     A    +   + ++P+   P+ LVCTP +L  +     I    LF     LVLDEADML++GSY K ++ IL A +   R ++ EG V   +V ++    TQ+VL+AAT+P++GLKSV  YI++ FP A+ +   +MH HHPAI Q ++ +
Sbjct:  134 PNYPCGIILAPTKELCWQIEDMAQATVKGLNDQGLRFRLEAVTEATG-RWKYAPDD-VPTFLVCTPKYLANFIQGPIIHEEALFESIRYLVLDEADMLLDGSYVKDVEKILDALKVVRRGLIREGLV---KVHEQ---VTQFVLSAATIPSFGLKSVKAYIQKRFPRAKIVWTENMHAHHPAIAQEYIMI 315          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A7S2R527_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R527_9STRA)

HSP 1 Score: 106 bits (265), Expect = 6.520e-24
Identity = 68/173 (39.31%), Postives = 99/173 (57.23%), Query Frame = 1
Query:  202 VCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEV-------------GGQVFD-KIQAVIDLLRDTVSETDTSRTMVFTNTA 678
            VCTP+F+ + +  K + LF     +VLDEADML++G Y  Q+D+ILVA +R  R+  +  PVVD          TQ +L+AAT+PTYGLKSVD+ + + FPNA +++   +HR  P ++ ++VEV             G + F  +   + +LLR         RTMVF NTA
Sbjct:    1 VCTPAFMARQS--KNLHLFDFLEAIVLDEADMLLDGGYLNQVDEILVARKRILRMRQQHEPVVDRH--------TQVILSAATIPTYGLKSVDKLVAKRFPNAARVENDLLHRTQPQLEHHWVEVESMGDEREGGATVGSRAFAARCLQLEELLRPATPSDPIPRTMVFANTA 163          
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Match: A0A2C6LGE9_9APIC (Dead deah box helicase domain-containing protein (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LGE9_9APIC)

HSP 1 Score: 103 bits (257), Expect = 8.830e-22
Identity = 74/225 (32.89%), Postives = 118/225 (52.44%), Query Frame = 1
Query:   25 PDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYPFSPNK--PAPSILVCTPSFLHKY---TNMKAIPLFCKATILVLDEADMLMEGSYRKQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGLKSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEV--GGQVFDKIQAVIDLLRDTVSETDTSRTMVFTNTA 678
            P  V++VP +EL  QV + ++ + +       T +TA    G+   +PF       +P ++VCTPS L  +   T  K++  F +  ++VLDEADML++G YR+ +D I  AFR+AD+ +  E        ++R   +TQY+ AAAT+P  G KSV + I    P A       +H+H   + Q F+EV  G    D++  ++  LR+        + M+F NTA
Sbjct:  298 PYAVIIVPTRELALQVVAWVRRLCRK------TTITAQLMLGTYTRWPFGTLALPTSPDLVVCTPSVLAPFARGTKTKSLGPFREIQVVVLDEADMLLDGGYRESMDAIFTAFRKADQQLARE--------KRR---RTQYIFAAATIPDRGPKSVRKTITSLCPKATFFYTRSLHQHKEQLAQEFIEVPPGASEEDRMALLLGKLRELSGN---EKVMIFCNTA 502          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14464.3436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBP8_9PHAE6.570e-15697.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR69_ECTSI9.950e-15497.83DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A836CM84_9STRA2.250e-4031.94P-loop containing nucleoside triphosphate hydrolas... [more]
A0A0G4ESI9_VITBC9.870e-3836.07Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S4D991_HETAK1.030e-3541.58Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XFB3_9EUKA2.910e-3342.70Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
W7TS57_9STRA1.780e-3139.90RNA helicase DEAD-box type n=2 Tax=Monodopsidaceae... [more]
A0A7S3H293_9STRA3.540e-2837.89Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2R527_9STRA6.520e-2439.31Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2C6LGE9_9APIC8.830e-2232.89Dead deah box helicase domain-containing protein (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14464contigEcto-sp13_S_contig14464:322..4410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score434.5
Seed ortholog evalue3e-119
Seed eggNOG ortholog2880.D7FR69
Model size690
KEGG koko:K14806
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009507,GO:0009536,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Exons7
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0333@2759,KOG0348@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-08_005190.1
EC3.6.4.13
Cds size672
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14464.3436.1prot_Ecto-sp13_S_contig14464.3436.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14464 322..4392 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.0798829-CDS-Ecto-sp13_S_contig14464:321..3861681462772.0798829-CDS-Ecto-sp13_S_contig14464:321..386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 322..386 -
1681462772.0897338-CDS-Ecto-sp13_S_contig14464:1305..13691681462772.0897338-CDS-Ecto-sp13_S_contig14464:1305..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 1306..1369 -
1681462772.0979712-CDS-Ecto-sp13_S_contig14464:1876..20041681462772.0979712-CDS-Ecto-sp13_S_contig14464:1876..2004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 1877..2004 -
1681462772.1060784-CDS-Ecto-sp13_S_contig14464:2518..26871681462772.1060784-CDS-Ecto-sp13_S_contig14464:2518..2687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 2519..2687 -
1681462772.1140485-CDS-Ecto-sp13_S_contig14464:3163..32941681462772.1140485-CDS-Ecto-sp13_S_contig14464:3163..3294Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 3164..3294 -
1681462772.1218255-CDS-Ecto-sp13_S_contig14464:3755..38191681462772.1218255-CDS-Ecto-sp13_S_contig14464:3755..3819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 3756..3819 -
1681462772.129657-CDS-Ecto-sp13_S_contig14464:4341..43921681462772.129657-CDS-Ecto-sp13_S_contig14464:4341..4392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14464 4342..4392 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462772.1375537-UTR-Ecto-sp13_S_contig14464:4392..44101681462772.1375537-UTR-Ecto-sp13_S_contig14464:4392..4410Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14464 4393..4410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14464.3436.1

>prot_Ecto-sp13_S_contig14464.3436.1 ID=prot_Ecto-sp13_S_contig14464.3436.1|Name=mRNA_Ecto-sp13_S_contig14464.3436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=224bp
MFPDVVVLVPNKELCDQVHSVLKGILKALNADGITGVTAAAKYGSSYEYP
FSPNKPAPSILVCTPSFLHKYTNMKAIPLFCKATILVLDEADMLMEGSYR
KQLDDILVAFRRADRVMVEEGPVVDGRVRKRGIDKTQYVLAAATLPTYGL
KSVDQYIKRAFPNARKIQQVHMHRHHPAIQQNFVEVGGQVFDKIQAVIDL
LRDTVSETDTSRTMVFTNTAASCK
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mRNA from alignment at Ecto-sp13_S_contig14464:322..4410-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14464.3436.1 ID=mRNA_Ecto-sp13_S_contig14464.3436.1|Name=mRNA_Ecto-sp13_S_contig14464.3436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14464:322..4410- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGCCCGCGGATGGCCGATGTTCCCGGACGTCGTCGTGCTCGTGCCCAA CAAGGAACTCTGCGATCAGGTCAGAGTGCTAAGGCGGGGGGAGGAGCACC GGTGTTTAATGTCGCCCCTTGACGTGTACAAGTACCATATCGTACCTCTA CTTGCGTTGTATGCGTATGCGTTGGCCACCCCCGAGCTCCTTTGCCTCCT CTTCCCCAACCATGTTTGGTTGTAAGCGTTGTTCTTCTCACGAAGCAGAC TTTTTGGCCTGCACACACCCTCTCCTTCAGTACTGGAATTCCTAAGAAAG TGAGCGGCTCGAAGAGGAGGGTCAGGCGGAGGTTTGGTACCATTTGAGAA CGATAATGGAGGGTCACAATCGATCGCCGTGTTATGGACAATGCTCTCGA CTTCACGGCCCACGCAAGAAAGCGAGGCTGAACCTGTTTTGGTGGGCTCC CCATCTACGCGAGTGCCGGAAAAATATGGATCCCCGACTAACCATTCCCA CCCCACCACTTCCCTTCCCGTCTCTTCTCTCCCTCGCACCTCAATATACC CCGATATTTCCCCGGCCGGGTCATCGCTATCTCTGAGGCAGGTGCATTCT GTGCTGAAGGGGATTCTCAAGGCTCTGAATGCCGACGGAATCACGGGCGT GACGGGTAAGCTCAGCAGAACAACGACACGCCAGAAACATGAAAGCGATA CAGGGGTTGTGAAGCGTAACTAACTAATGAGAGTTTGTTTTCGTTTTGGA TGAGGCCGGTGGCCTATTCCTTACGGGAAAAAATCCCCTCTCTCTAGCGC CTCCTCCTCGTACTCCGCCTCCTCCTCTACAGGAACGGCGTTGTGTTGCA TTAGCTGTGGGGAGTCAGGAGGCGTTTTTTTCATTCGTGCAAGCATCCCC GTCTCTCGCTCGACGACAAGCTCGCCAGGAAGCCGCATGCCCCAATCCTA GCGCGACGGCGTTGCTGCGGGTTGTCCGCGGTATGGAAGGGCCTCTTCGA ACTACTGCCTCTGTTGTCTTCCGACAGGTCGTTGCTGTACCCTCCAGCCC CCCTTGGCCCTAACCCAAATGCGTGCCCCTTTTTCTCGTTTTCGCTTTCG TTTTGTGCTTTGATAGCCGCGGCCAAGTACGGGTCGTCCTACGAGTACCC TTTCTCACCCAACAAGCCGGCCCCGAGCATCCTGGTGTGCACTCCGTCTT TCCTCCACAAGTACACCAACATGAAGGCCATCCCGCTTTTCTGCAAGGTA AAGGCTAGTAGTATTAGTATTAGTAGCGCTGATTAGTGTATACGCAAGTT ACGGCCCACCCATCCGACCCTACGGATTTGTGGTGAGTGGGCAGAAATAA CAACGCGCGCACGGATGAAAGCAAGACATAATTGTTAGAATGTCTATATT CTTGTGGGGCGGTGTGTCTCTAGCAGGAGAAACAGGGAAGAATCGGTGAT CATACGTCTCGAACTGGGTGATGCTTGTGGTCATTGGCCAACCAACGGCG GAGGGTAACACCAAACGAGTTGCGGGAATGATTGGCCATCGGTGATCGAT CCTATGGGAACAATGCTCCGCCCTCTCTAGGACGCGTGGCCAATGGTCTA ACCGCAAAGGCGTGCAAAACAGGAGTACTCCCCCCCCGTCCCCGCTAGTG GTCAGTGGTCAAACAACTATTATAAGGTATAAAGACAACGAGTACCCCCC CCACGCTGCCGCGGTAAAAAAAGGCGACGATTCTGGTGCTAGACGAGGCG GACATGCTGATGGAGGGCAGCTACAGGAAGCAGCTGGACGACATCCTCGT GGCTTTCCGACGGGCTGACAGGGTGATGGTGGAGGAGGGCCCGGTCGTGG ACGGCAGGGTCAGGAAACGCGGCATCGACAAGACGCAGTATGGTGAGCTA CTACTGTACGAGCGCGCTCGTGTGTGTGTCTTTTGGCTCGCTTTTTGGGT TTGTGTTTGGTTGGTTGTGTGGGTGTGGTGTCCTGTTTTGTTTTTTTCTG TATGGGTCGATGCGCGGCGCTGGTTTTGTCTCAGCAGATCGCGCTTGTTT CCAGTCTTTTCTAAATGTCTTCTCTTTCTACCCTCTCAGCTGGTGCTGCT GCTAGTGTTGTTGCTGCTGTTGTTGCTTCTGTTGCTACTCTTGTTGACTT GTTGCTGCTGCTGCTGCTGCTGCTGCTACTGCGCCTGCTGTTGTTGCTGC TGCTGTTGCTATTGTTGTTGTAATTTTGAGTGTTGCCGGCCCCGATGGTA CACGTGAATAGCGTCGCAAAAAGAGCCTGATTCCGTGTTCCTCTCATGAT TCCACTGCTCGTTGGCTCAACTTTGTTGTTGGCATAATTAACCCTGTCGC TGCCTTCTCAAGTCACCTATTTGCTGGCTTACCCCCCCTGTCGCTGCCTT TTCAAGTCTTGGCGGCCGCGACGCTGCCAACGTACGGCCTGAAGTCCGTG GACCAGTACATCAAAAGAGCGTTCCCCAACGCGCGCAAGATTCAGCAAGT CCACATGCACAGGCATCACCCGGCTATTCAGCAGGTGAAGCGCATGTCGT CGCCGCCTCCGCTGTTGTTGTTGTTGTTACTGTTGTTGTTGTTGTTGTTG TTGTTATTGTTATTTATGGTCGCCATCTGGCGCTGTTATCTTGTTCGTCG ACGCCGTTTTTGTTACTGCTGCTGCTGTTGGAGCCTTGGGAGTGCCTATC GCCACACGCCGACGTCACAGGGGGTGAATGTCGCAAGCCAGCCAGGTAGC TCCCTCGCAACGCCCGCTGTCTGCCGTGTTCTTTCATGAATGGGGAACTT GCACTTGCCTTGATCGTCTTGCTAGATTCGGATTCGACCTACTCAAGAAA ATCGCCGCTTTTGCACGTACGATTTTGTTGTTTCCATCTGCGTACTCTGT AAGGTTGTACTTGCAAACTATCGAACGAGGGCTCCGTTGTGTGTCTGCCG TGTTTCTTTTTGCATTCCCCTCCCTCAAGACTACTTTCTTGAACTGTGCT CTTTTGTGTTGTTGTCTCTTTTTGCACTCTCCATCAAACAGAACTTTGTT GAGGTTGGAGGACAGGTGTTCGACAAGATCCAGGCGGTCATCGACCTTCT CAGAGGTGACTTTTCGTTTTCTCGGTGGGGAGGGGGAGGAGAAGGATGTC TGGGGTACACATGGATACGATATCCGATCTTGGAAATGTATGAAGGGGGG GATGCCTTTGGGGGTTCAACTGCGGGGCCCCTCGATCGATCGATCGAGAG AGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG AGAGAGAGCACGCACATGTGTTTACTCTTTGTCACTTCGTTTGTGTTTAT GTTCTGTAGTTGTGCCTCTGTCTGCTGGAAGGAACACTGTTGTGAATTAA TCAAGGTTTATGTCATCAACATCGGTCCTGGGTTAGCATAGTCACCGCAT TCAACCCACGCGACCGCGGGAAGGCGCTACAGCCTCCGTGGGAACTCGCG GAGGCGGCTAACAAGGGAGGGAAGCTGCAACAGAGGGAGCTCTCGTGGCT AACAAGGGAGGGAAGCTGCAACAGAGGGAGCTCTCGTTTGTTGGCAAATG AAGTCGACAACGAGGAGAATGCACTTGTTGTGACGTTTTATCGGCTTTGC GCAGGCAAACTGCTGCTGCTGCTGCTTGATATCGTTGCGGTTGTTCTGGG ATTAATTGTGGTGGTGGTGGCAGTGATGTTGACCACGCCGTAGTGGTGAT AGGCAATTTTTGTGCTGCTGCGCGGTGCGTTCTGTTCTCTGATGGCGTGC GGGTCTTGTCCCACCACGCCGCGTGTCGACCACGCGGTTTTTCCCTCACA GGCTTACGTGCATCTATCATCATGTCATGTGATTCGTGTACAACTCTCGA AGACAAGAAAAACGCTCATCATCAGCGTCTGCTGCCTTTTGTCGTCTCCG ATATTGTTGCTGAATTGCTTTCTTCGACGACCCCGGTTTGTTGCTGTGCG CATGCTTGTTGCGACGGACGGAAGACACCGTTTCGGAAACGGACACGAGC CGGACCATGGTCTTCACCAATACGGCGGCGTCGTGCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14464:322..4410-

>mRNA_Ecto-sp13_S_contig14464.3436.1 ID=mRNA_Ecto-sp13_S_contig14464.3436.1|Name=mRNA_Ecto-sp13_S_contig14464.3436.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14464:322..4410- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCCGGACGTCGTCGTGCTCGTGCCCAACAAGGAACTCTGCGATCA
GGTGCATTCTGTGCTGAAGGGGATTCTCAAGGCTCTGAATGCCGACGGAA
TCACGGGCGTGACGGCCGCGGCCAAGTACGGGTCGTCCTACGAGTACCCT
TTCTCACCCAACAAGCCGGCCCCGAGCATCCTGGTGTGCACTCCGTCTTT
CCTCCACAAGTACACCAACATGAAGGCCATCCCGCTTTTCTGCAAGGCGA
CGATTCTGGTGCTAGACGAGGCGGACATGCTGATGGAGGGCAGCTACAGG
AAGCAGCTGGACGACATCCTCGTGGCTTTCCGACGGGCTGACAGGGTGAT
GGTGGAGGAGGGCCCGGTCGTGGACGGCAGGGTCAGGAAACGCGGCATCG
ACAAGACGCAGTATGTCTTGGCGGCCGCGACGCTGCCAACGTACGGCCTG
AAGTCCGTGGACCAGTACATCAAAAGAGCGTTCCCCAACGCGCGCAAGAT
TCAGCAAGTCCACATGCACAGGCATCACCCGGCTATTCAGCAGAACTTTG
TTGAGGTTGGAGGACAGGTGTTCGACAAGATCCAGGCGGTCATCGACCTT
CTCAGAGACACCGTTTCGGAAACGGACACGAGCCGGACCATGGTCTTCAC
CAATACGGCGGCGTCGTGCAAG
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