mRNA_Ecto-sp13_S_contig14449.3422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14449.3422.1
Unique NamemRNA_Ecto-sp13_S_contig14449.3422.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 598 bits (1543), Expect = 1.150e-209
Identity = 314/333 (94.29%), Postives = 323/333 (97.00%), Query Frame = 1
Query:    1 ELLLAETTTQPTNIGHGNMADTTVLQRQQQQPHRETAKPVSKTSTVTGAAAAXXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
            ++LLAETTTQPTNIGHGNMA T  L+RQQQQP++ETAKPVSK STVTGAAAA XXXXXXXXXXXXXXXAATYEVSPDGDPMTL AALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGR AV+NY+TGDKS+MWSQKVVDIRHSWVTLRGFTIDGQIDDAD EDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTN VIIDNDIEDCG+YDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY
Sbjct:   10 KVLLAETTTQPTNIGHGNMAVTANLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 342          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 460 bits (1183), Expect = 1.290e-157
Identity = 220/265 (83.02%), Postives = 243/265 (91.70%), Query Frame = 1
Query:  205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
            AA YEVSPDG+PMTLTAALEVAGAGD +SL DG YREP+VTMNAGVEGNPLVI GGRGA+INYF+GD+S+MWSQKVVDIRHS+VTL GFTIDGQ+DD D E+S+VDKCIFVEGQAAP  + + G+ VE+ALIGTVID +KIQNCGMECIRMRNFVTNAVI +NDIE+CG+YD+R+ FDGK+GEAIYIGTSSNQW DG   RVTNGPDG NYNLVTGNKLVPRGNECVDIKEGATMNVVEYN+CEDQRD ESGCYDSRGNENTFRY
Sbjct:   32 AAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTLEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRY 296          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 1.430e-116
Identity = 185/206 (89.81%), Postives = 193/206 (93.69%), Query Frame = 1
Query:   22 TTQPTNIGHGNMADTTVLQRQQQQPHRETAKPVSKTSTVTGAAAAXXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCG 639
            TTQP  IGHGNMADTT+L+R QQQPHRETAKPVSK ST+TGAA A     XXXXXXXXXX AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGR AVINY+TGDKS+MWSQKVVDIRHSW+TLRGFT+D QIDDADDE+SFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCG
Sbjct:    2 TTQPIKIGHGNMADTTILRRNQQQPHRETAKPVSKKSTITGAAGATAARLXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTGDKSIMWSQKVVDIRHSWITLRGFTVDCQIDDADDEESFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCG 207          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 6.400e-83
Identity = 133/265 (50.19%), Postives = 174/265 (65.66%), Query Frame = 1
Query:  205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
            A T++ SPDG P ++ +AL  AGAGDT+ L DG Y E +VT+  G  GNPL+I GGR A++N   GD       KVV ++HSWVTL GF++DG+I D D+ +S+VDKC+FVEG +   D   +G          V+  + +QNCG EC+R+++F+  AVI DN I+DCGV D+ Y   GK GE IY+GTSS QW+DG        PD CN N +TGN + P GNECVDIKEG+T  +VE N C  Q D +SGC+ SRG+ N FRY
Sbjct:   13 ARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVN--AGDDG-----KVVYVQHSWVTLEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEG---------FVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDG--------PDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRY 253          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI)

HSP 1 Score: 259 bits (663), Expect = 7.050e-82
Identity = 121/144 (84.03%), Postives = 132/144 (91.67%), Query Frame = 1
Query:  568 YDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
            + G  VE+ALIGTVID +KIQNCGMECIRMRNFVTNAVI +NDIE+CG+YD+R+ FDGK+GEAIYIGTSSNQW DG   RVTNGPDG NYNLVTGN+LVPRGNECVDIKEGATMNVVEYN+CEDQRD ESGCYDSRGNENTFRY
Sbjct:    4 HQGLEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRY 147          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 7.080e-70
Identity = 125/266 (46.99%), Postives = 171/266 (64.29%), Query Frame = 1
Query:  205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDAD-DEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
            A TY+ S DGD   L  A+++A AGDT++L DG Y   LV++  G  G+P+ + GG GA+I      +S++       I HS++TL+GFT++G+I  +D DE S+V+KC++VEG          G      L G V++ M +QNCG EC+R+++ V NA ++ N I +CGV+DY +    K GE +YIGTSS QW        TNG D CN NLV+GN++   GNECVDIKEGA+ NV+E N C +Q D ESGCYDSRG+ NTFRY
Sbjct:   39 AVTYDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVL-------ITHSFITLKGFTVEGKIGTSDTDEASWVNKCVYVEGP---------GSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQW--------TNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRY 280          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 231 bits (589), Expect = 4.760e-69
Identity = 123/265 (46.42%), Postives = 168/265 (63.40%), Query Frame = 1
Query:  205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDAD-DEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFR 996
            A T++ S DGD   L  A+++A AGDT++L DG Y   LV++  G  G+P+ + GG GA+I      +S++       I HS++TL+GFT++G++  +D DE S+V+KC++VEG          G      L G V++ M +QNCG EC+R+++ V NA +  N I +CGV+D+ +    K GE +YIGTSS QW        TNG D CN NLV GN++   GNECVDIKEGA+ NVVE N C DQ D ESGCYDSRG+ NTFR
Sbjct:   39 AVTFDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVL-------ITHSFITLKGFTVEGKVGTSDTDEASWVNKCVYVEGP---------GSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQW--------TNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.290e-68
Identity = 121/266 (45.49%), Postives = 169/266 (63.53%), Query Frame = 1
Query:  205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDAD-DEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
            A TY VS DGD + L  A+++A AGDT++L +G Y   LV++  G  G+P+ + GG GA+I   +  +S+        I HS++TL+GF+++G+I   D D+ S+V+KC++VEG          G      L G V++ M +QNCG EC+R+++ V NA +  N I +CGV+DY +  + K GE +YIGTSS QW        TNG D CN N+V+ N +   GNECVDIKEG++ NV+E N C DQ D ESGCYDSRG+ NTFRY
Sbjct:   39 AVTYNVSADGDGIDLYEAMDLAEAGDTVNLQNGTYDSALVSIRDGEFGSPITVAGGPGAIIKGSSSSRSVF-------ITHSFITLKGFSVEGKIGSNDTDQASWVNKCVYVEGP---------GANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQW--------TNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRY 280          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 7.910e-64
Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 1
Query:   55 MADTTVLQRQQQQPHRETAKPVSKTSTVTGAAAAXXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLR 465
            MA T  L+RQQQQP++ETAKPVSK STVTGAAAA XXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGR AV+NY+TGDKS+MWSQKVVDIRHSWVTLR
Sbjct:    1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 137          
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 1.390e-62
Identity = 115/262 (43.89%), Postives = 161/262 (61.45%), Query Frame = 1
Query:  211 TYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFR 996
            TY+V+ DGD   L  A+++A AGDT+SL DG Y + L T+  G  GNP+ + GG GA+I      K+   + + V + HS++ L+GFT++GQI     EDS+V  CI+V+G          G    T L G V++ M +QNCG EC+R+++ VTNA I  N I +CG++DY +      G+ + IGTSS++W DG +       D C  NLV GN +    NECVD+KEGA  NV+E N C +Q D+ SGCY+SRGN+N FR
Sbjct:    2 TYDVTVDGDGFGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAII------KAQNSASRSVFVGHSFIELKGFTVEGQIGTEVTEDSYVLNCIYVQGP---------GSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEE-------DVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFR 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ42_ECTSI1.150e-20994.29FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5K1D2_9PHAE1.290e-15783.02Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KG59_9PHAE1.430e-11689.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT05_9PHAE6.400e-8350.19Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
D8LJ29_ECTSI7.050e-8284.03FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FXR8_ECTSI7.080e-7046.99FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5LEX7_9PHAE4.760e-6946.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXR9_ECTSI1.290e-6845.49FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FHJ7_ECTSI7.910e-6490.51EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZD2_ECTSI1.390e-6243.89FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14449contigEcto-sp13_S_contig14449:131..2659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score198.0
Seed ortholog evalue7.1e-48
Seed eggNOG ortholog1121935.AQXX01000136_gene4114
Model size999
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Parallel beta-helix repeats
EggNOG OGs1NHJ7@1224,1SHNB@1236,COG3420@1,COG3420@2
Cds size999
COG Functional cat.P
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.1853466-CDS-Ecto-sp13_S_contig14449:130..2871681462771.1853466-CDS-Ecto-sp13_S_contig14449:130..287Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14449 131..287 -
1681462771.1955369-CDS-Ecto-sp13_S_contig14449:693..8971681462771.1955369-CDS-Ecto-sp13_S_contig14449:693..897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14449 694..897 -
1681462771.204821-CDS-Ecto-sp13_S_contig14449:1174..13471681462771.204821-CDS-Ecto-sp13_S_contig14449:1174..1347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14449 1175..1347 -
1681462771.2138772-CDS-Ecto-sp13_S_contig14449:2194..26591681462771.2138772-CDS-Ecto-sp13_S_contig14449:2194..2659Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14449 2195..2659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14449.3422.1prot_Ecto-sp13_S_contig14449.3422.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14449 131..2659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14449.3422.1

>prot_Ecto-sp13_S_contig14449.3422.1 ID=prot_Ecto-sp13_S_contig14449.3422.1|Name=mRNA_Ecto-sp13_S_contig14449.3422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
ELLLAETTTQPTNIGHGNMADTTVLQRQQQQPHRETAKPVSKTSTVTGAA
AATAARLATAALALTAASAATYEVSPDGDPMTLTAALEVAGAGDTISLGD
GIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHS
WVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALI
GTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVG
EAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEG
ATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY
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mRNA from alignment at Ecto-sp13_S_contig14449:131..2659-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14449.3422.1 ID=mRNA_Ecto-sp13_S_contig14449.3422.1|Name=mRNA_Ecto-sp13_S_contig14449.3422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14449:131..2659- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTCCTACTCGCCGAGACGACGACGCAACCAACCAACATCGGCCACGG CAACATGGCGGATACGACTGTCCTTCAACGTCAGCAACAGCAGCCACACC GGGAGACTGCGAAACCGGTCAGCAAGACATCCACCGTCACGGGTGCCGCC GCCGCCACTGCCGCGCGCCTTGCCACGGCAGCCCTCGCCCTCACCGCTGC TAGCGCGGCCACCTACGAGGTGTCCCCTGATGGCGATCCCATGACGCTCA CCGCAGCGCTAGAGGTGGCCGGTGCAGGCGACACCATATCTTTGGGGGAC GGGATCTACCGCGAGCCGCTCGTGACGATGAACGCCGGTGTGGAGGGCAA TCCCCTCGTGATCGAGGGTGGCAGAGGCGCGGTCATCAATTACTTCACCG GCGATAAGAGTATGATGTGGTCCCAGAAGGTCGTCGACATTCGCCACTCG TGGGTCACTCTGCGGGTGAGAGGCAAAGATGTATAGTAGAGAAGAATAGA GACAAGACATGTGAGTGAGGGCGTGCGTGTTGTGGACCGCACGATGTTCA GCGCACGTGCTGCCAGAACGTATTCCAAGGTTAGGTCGTAGCCTGGCCGC TGCCGTTCAGTTCCTCTGCGGAAATCGACTGGTTCTCCAGTAGGAGGTGG TCAGGAAGAAACACCCGTATTGGAACCATTTCCGTAGGAGGTTTTGGCGC GCAAACGCGAAGGGTTCCATGATCCTCAACCTGAAAAGGTGCTCATCCCA ACGATGCCAGAAACTTCTCAGGAATCGCTGGGGTTGTTTGTAAGCAAGTT TTTGTTCTGGTTGTTGGGCCAACGTAAACGTCAACGGCAACGGACCCGCC ACCGAAATCGATTGCCCCACAGCAAACTTGGAATTGCGGCTTTGAGACAG TTCCTGAAGTTCTTGGAGAAAGGACGTAACGATCTGTTCGAAATCTTACT TGTTGTGAGGGGGAAAAGGTACCCATTTAACTCTGCTACGGTACAGTGTA TGACGATGATGGCACCAAAGTAGCATCGAGCAGATGTCCATCGCATACGC ACTGACTGAATATGTAATTGTCGCACGACCACTTGCCGCATTACCTCCAT ATCGATACGTTTGGTGGCTTGCGGTGGTTTTCGACGTTTGGCGAATACCA CAAAAAAAAACGTTCATGATGTGCATGCGATGCTGTTGTTTGTCCCGCTT CGCATCGTAGCAGTGGAAAGATCATCCTTCCACTCTTCGCACCAAATCCT CGAAATCCAGGCAAAGAGCTAACATCACGTGCGGTGCGTATCTTGTTGCC CCTTACAACCAGGGATTTACCATCGACGGTCAGATAGACGACGCCGATGA CGAGGATTCGTTCGTGGACAAGTGTATCTTCGTGGAGGGTCAGGCCGCGC CCGAGGACGTCGAGTACGACGGTCGCACTGTTGAGACCGCCTTAATTGGC ACGGTGATCGACAGCATGAAAATCCAAAACTGCGGGTGCGTTCTTGCGTG CGTATTGAACTAAGGGGGGGTTGGCACTCACCGGTAGTTTTCCAATAATG ACCAGTACAATACTCGTGGGTATTGAGGCCTTCATTCTTGTTCTTCTTGT TCTTCTTGTTCTTCTTGTTCTTGTCTTCCTTGAGTTACTGCGGCGGCTGT GCATGCGCATTTGTTCTTTTCGGCATCCTCCGGTTGAATGATTTGCGGAA CGTGAGCTGATTTGCGGAACGTGAGCTGTGTACCAATGAACACGCCACCG ACCATCTTGCAGGATGGAGTGCATCCGCATGAGGAACTTCGTCACCAACG CCGTGATCATCGACAACGACATCGAGGACTGCGGCGTCTACGACTACCGT TACACGTTCGATGGAAAGGTCGGCGAAGCAATCTACATCGGAACGTCCAG CAACCAGTGGGCCGACGGGGCAGACGGGAGGGTGACGAACGGCCCTGACG GATGCAACTACAACCTGTGAGTGACGTATGCGAGTGACTCTCGTTGGAGG TATGTTGTTTCTTGGTGTTTCGGTTTCATCCTTGTCCTGTGTCTTGTGTG TGTGCACAGATTAGCCAGACATTTCTTTCAGTGTATTCCCTCGTGGTGTG CATATCACGAGACACGCCTTGTGGGCGTCGTTATGATTGTCCTTTGAGAA CCACTCCTCATATTGATTCGAAGGTAACGATGGAGTCAGCACGTGTGGAC GGTGATGACTACTACGGAACACGTTCCACGCCTGACCATGCCGTAGGAAG GAACGGCTATACTTTGAAATGGCCGGGCTGGACATACACTCGCAGTCAGC GAGTGATAAGAGAACCCGGGCTACGGAGAGAGTAATGACCTGACCACGAC GTAAAATTGGCTTTACCGACAGGGTGACCGGGAACAAGCTCGTGCCTCGC GGGAACGAGTGCGTGGACATCAAGGAAGGCGCAACCATGAACGTCGTCGA GTACAACGATTGTGAGGACCAGCGGGACGTGGAGTCAGGATGCTACGACT CGAGGGGAAACGAGAACACATTCAGGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14449:131..2659-

>mRNA_Ecto-sp13_S_contig14449.3422.1 ID=mRNA_Ecto-sp13_S_contig14449.3422.1|Name=mRNA_Ecto-sp13_S_contig14449.3422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14449:131..2659- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCTCCTACTCGCCGAGACGACGACGCAACCAACCAACATCGGCCACGG
CAACATGGCGGATACGACTGTCCTTCAACGTCAGCAACAGCAGCCACACC
GGGAGACTGCGAAACCGGTCAGCAAGACATCCACCGTCACGGGTGCCGCC
GCCGCCACTGCCGCGCGCCTTGCCACGGCAGCCCTCGCCCTCACCGCTGC
TAGCGCGGCCACCTACGAGGTGTCCCCTGATGGCGATCCCATGACGCTCA
CCGCAGCGCTAGAGGTGGCCGGTGCAGGCGACACCATATCTTTGGGGGAC
GGGATCTACCGCGAGCCGCTCGTGACGATGAACGCCGGTGTGGAGGGCAA
TCCCCTCGTGATCGAGGGTGGCAGAGGCGCGGTCATCAATTACTTCACCG
GCGATAAGAGTATGATGTGGTCCCAGAAGGTCGTCGACATTCGCCACTCG
TGGGTCACTCTGCGGGGATTTACCATCGACGGTCAGATAGACGACGCCGA
TGACGAGGATTCGTTCGTGGACAAGTGTATCTTCGTGGAGGGTCAGGCCG
CGCCCGAGGACGTCGAGTACGACGGTCGCACTGTTGAGACCGCCTTAATT
GGCACGGTGATCGACAGCATGAAAATCCAAAACTGCGGGATGGAGTGCAT
CCGCATGAGGAACTTCGTCACCAACGCCGTGATCATCGACAACGACATCG
AGGACTGCGGCGTCTACGACTACCGTTACACGTTCGATGGAAAGGTCGGC
GAAGCAATCTACATCGGAACGTCCAGCAACCAGTGGGCCGACGGGGCAGA
CGGGAGGGTGACGAACGGCCCTGACGGATGCAACTACAACCTGGTGACCG
GGAACAAGCTCGTGCCTCGCGGGAACGAGTGCGTGGACATCAAGGAAGGC
GCAACCATGAACGTCGTCGAGTACAACGATTGTGAGGACCAGCGGGACGT
GGAGTCAGGATGCTACGACTCGAGGGGAAACGAGAACACATTCAGGTAC
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