mRNA_Ecto-sp13_S_contig14449.3422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI) HSP 1 Score: 598 bits (1543), Expect = 1.150e-209 Identity = 314/333 (94.29%), Postives = 323/333 (97.00%), Query Frame = 1
Query: 1 ELLLAETTTQPTNIGHGNMADTTVLQRQQQQPHRETAKPVSKTSTVTGAAAAXXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
++LLAETTTQPTNIGHGNMA T L+RQQQQP++ETAKPVSK STVTGAAAA XXXXXXXXXXXXXXXAATYEVSPDGDPMTL AALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGR AV+NY+TGDKS+MWSQKVVDIRHSWVTLRGFTIDGQIDDAD EDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTN VIIDNDIEDCG+YDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY
Sbjct: 10 KVLLAETTTQPTNIGHGNMAVTANLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRGFTIDGQIDDADHEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNTVIIDNDIEDCGIYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 342
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE) HSP 1 Score: 460 bits (1183), Expect = 1.290e-157 Identity = 220/265 (83.02%), Postives = 243/265 (91.70%), Query Frame = 1
Query: 205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
AA YEVSPDG+PMTLTAALEVAGAGD +SL DG YREP+VTMNAGVEGNPLVI GGRGA+INYF+GD+S+MWSQKVVDIRHS+VTL GFTIDGQ+DD D E+S+VDKCIFVEGQAAP + + G+ VE+ALIGTVID +KIQNCGMECIRMRNFVTNAVI +NDIE+CG+YD+R+ FDGK+GEAIYIGTSSNQW DG RVTNGPDG NYNLVTGNKLVPRGNECVDIKEGATMNVVEYN+CEDQRD ESGCYDSRGNENTFRY
Sbjct: 32 AAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTLEGFTIDGQLDDEDVEESYVDKCIFVEGQAAPTMLTHQGQEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRY 296
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE) HSP 1 Score: 345 bits (884), Expect = 1.430e-116 Identity = 185/206 (89.81%), Postives = 193/206 (93.69%), Query Frame = 1
Query: 22 TTQPTNIGHGNMADTTVLQRQQQQPHRETAKPVSKTSTVTGAAAAXXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCG 639
TTQP IGHGNMADTT+L+R QQQPHRETAKPVSK ST+TGAA A XXXXXXXXXX AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGR AVINY+TGDKS+MWSQKVVDIRHSW+TLRGFT+D QIDDADDE+SFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCG
Sbjct: 2 TTQPIKIGHGNMADTTILRRNQQQPHRETAKPVSKKSTITGAAGATAARLXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTGDKSIMWSQKVVDIRHSWITLRGFTVDCQIDDADDEESFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCG 207
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 263 bits (671), Expect = 6.400e-83 Identity = 133/265 (50.19%), Postives = 174/265 (65.66%), Query Frame = 1
Query: 205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
A T++ SPDG P ++ +AL AGAGDT+ L DG Y E +VT+ G GNPL+I GGR A++N GD KVV ++HSWVTL GF++DG+I D D+ +S+VDKC+FVEG + D +G V+ + +QNCG EC+R+++F+ AVI DN I+DCGV D+ Y GK GE IY+GTSS QW+DG PD CN N +TGN + P GNECVDIKEG+T +VE N C Q D +SGC+ SRG+ N FRY
Sbjct: 13 ARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVN--AGDDG-----KVVYVQHSWVTLEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEG---------FVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQWSDG--------PDECNDNTITGNTITPNGNECVDIKEGSTGTIVEENTCSGQLDEDSGCFGSRGDGNVFRY 253
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D8LJ29_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ29_ECTSI) HSP 1 Score: 259 bits (663), Expect = 7.050e-82 Identity = 121/144 (84.03%), Postives = 132/144 (91.67%), Query Frame = 1
Query: 568 YDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
+ G VE+ALIGTVID +KIQNCGMECIRMRNFVTNAVI +NDIE+CG+YD+R+ FDGK+GEAIYIGTSSNQW DG RVTNGPDG NYNLVTGN+LVPRGNECVDIKEGATMNVVEYN+CEDQRD ESGCYDSRGNENTFRY
Sbjct: 4 HQGLEVESALIGTVIDGLKIQNCGMECIRMRNFVTNAVIQNNDIENCGIYDFRFQFDGKIGEAIYIGTSSNQWEDGTGDRVTNGPDGSNYNLVTGNELVPRGNECVDIKEGATMNVVEYNECEDQRDAESGCYDSRGNENTFRY 147
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 236 bits (601), Expect = 7.080e-70 Identity = 125/266 (46.99%), Postives = 171/266 (64.29%), Query Frame = 1
Query: 205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDAD-DEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
A TY+ S DGD L A+++A AGDT++L DG Y LV++ G G+P+ + GG GA+I +S++ I HS++TL+GFT++G+I +D DE S+V+KC++VEG G L G V++ M +QNCG EC+R+++ V NA ++ N I +CGV+DY + K GE +YIGTSS QW TNG D CN NLV+GN++ GNECVDIKEGA+ NV+E N C +Q D ESGCYDSRG+ NTFRY
Sbjct: 39 AVTYDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRDGEFGSPITVSGGPGAIIKGSYSSRSVL-------ITHSFITLKGFTVEGKIGTSDTDEASWVNKCVYVEGP---------GSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQW--------TNGEDTCNDNLVSGNRISTSGNECVDIKEGASGNVIEDNICSEQLDAESGCYDSRGDGNTFRY 280
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 231 bits (589), Expect = 4.760e-69 Identity = 123/265 (46.42%), Postives = 168/265 (63.40%), Query Frame = 1
Query: 205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDAD-DEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFR 996
A T++ S DGD L A+++A AGDT++L DG Y LV++ G G+P+ + GG GA+I +S++ I HS++TL+GFT++G++ +D DE S+V+KC++VEG G L G V++ M +QNCG EC+R+++ V NA + N I +CGV+D+ + K GE +YIGTSS QW TNG D CN NLV GN++ GNECVDIKEGA+ NVVE N C DQ D ESGCYDSRG+ NTFR
Sbjct: 39 AVTFDASADGDGFDLYEAMDLAQAGDTVNLQDGTYDSALVSVRGGEFGSPITVSGGPGAIIKGSYSSRSVL-------ITHSFITLKGFTVEGKVGTSDTDEASWVNKCVYVEGP---------GSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQW--------TNGEDTCNDNLVFGNRISTSGNECVDIKEGASGNVVENNICSDQLDAESGCYDSRGDGNTFR 279
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 228 bits (580), Expect = 1.290e-68 Identity = 121/266 (45.49%), Postives = 169/266 (63.53%), Query Frame = 1
Query: 205 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDAD-DEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFRY 999
A TY VS DGD + L A+++A AGDT++L +G Y LV++ G G+P+ + GG GA+I + +S+ I HS++TL+GF+++G+I D D+ S+V+KC++VEG G L G V++ M +QNCG EC+R+++ V NA + N I +CGV+DY + + K GE +YIGTSS QW TNG D CN N+V+ N + GNECVDIKEG++ NV+E N C DQ D ESGCYDSRG+ NTFRY
Sbjct: 39 AVTYNVSADGDGIDLYEAMDLAEAGDTVNLQNGTYDSALVSIRDGEFGSPITVAGGPGAIIKGSSSSRSVF-------ITHSFITLKGFSVEGKIGSNDTDQASWVNKCVYVEGP---------GANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQW--------TNGEDTCNGNVVSRNLISTSGNECVDIKEGSSGNVIEDNFCSDQLDAESGCYDSRGDGNTFRY 280
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI) HSP 1 Score: 208 bits (529), Expect = 7.910e-64 Identity = 124/137 (90.51%), Postives = 130/137 (94.89%), Query Frame = 1
Query: 55 MADTTVLQRQQQQPHRETAKPVSKTSTVTGAAAAXXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLR 465
MA T L+RQQQQP++ETAKPVSK STVTGAAAA XXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGR AV+NY+TGDKS+MWSQKVVDIRHSWVTLR
Sbjct: 1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 137
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI) HSP 1 Score: 216 bits (551), Expect = 1.390e-62 Identity = 115/262 (43.89%), Postives = 161/262 (61.45%), Query Frame = 1
Query: 211 TYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRGFTIDGQIDDADDEDSFVDKCIFVEGQAAPEDVEYDGRTVETALIGTVIDSMKIQNCGMECIRMRNFVTNAVIIDNDIEDCGVYDYRYTFDGKVGEAIYIGTSSNQWADGADGRVTNGPDGCNYNLVTGNKLVPRGNECVDIKEGATMNVVEYNDCEDQRDVESGCYDSRGNENTFR 996
TY+V+ DGD L A+++A AGDT+SL DG Y + L T+ G GNP+ + GG GA+I K+ + + V + HS++ L+GFT++GQI EDS+V CI+V+G G T L G V++ M +QNCG EC+R+++ VTNA I N I +CG++DY + G+ + IGTSS++W DG + D C NLV GN + NECVD+KEGA NV+E N C +Q D+ SGCY+SRGN+N FR
Sbjct: 2 TYDVTVDGDGFGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAII------KAQNSASRSVFVGHSFIELKGFTVEGQIGTEVTEDSYVLNCIYVQGP---------GSDSSTFLDGFVMEEMAVQNCGGECVRLKDGVTNAKIFSNTITNCGIHDYMFESGDMNGQGVCIGTSSDEWPDGEE-------DVCTNNLVAGNVIDTSANECVDVKEGAYGNVIEDNMCYNQLDINSGCYNSRGNDNIFR 241 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14449.3422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14449.3422.1 >prot_Ecto-sp13_S_contig14449.3422.1 ID=prot_Ecto-sp13_S_contig14449.3422.1|Name=mRNA_Ecto-sp13_S_contig14449.3422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp ELLLAETTTQPTNIGHGNMADTTVLQRQQQQPHRETAKPVSKTSTVTGAAback to top mRNA from alignment at Ecto-sp13_S_contig14449:131..2659- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14449.3422.1 ID=mRNA_Ecto-sp13_S_contig14449.3422.1|Name=mRNA_Ecto-sp13_S_contig14449.3422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2529bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14449:131..2659- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14449:131..2659- >mRNA_Ecto-sp13_S_contig14449.3422.1 ID=mRNA_Ecto-sp13_S_contig14449.3422.1|Name=mRNA_Ecto-sp13_S_contig14449.3422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14449:131..2659- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |