mRNA_Ecto-sp13_S_contig14447.3420.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14447.3420.1
Unique NamemRNA_Ecto-sp13_S_contig14447.3420.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14447.3420.1 vs. uniprot
Match: D7FMD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMD8_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.450e-45
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:    1 RRRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQKAGGTGWFEDVASP 243
            R+RAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAV LRTLFD   DVWFRVQERTQKAGGTGWF+DV  P
Sbjct:   29 RQRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVLLRTLFDARSDVWFRVQERTQKAGGTGWFQDVIFP 109
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BLAST of mRNA_Ecto-sp13_S_contig14447.3420.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.410e-20
Identity = 48/68 (70.59%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:    1 RRRAEVAWEDLKQRLPDEVLENMCAILGR-DDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQ 201
            RRRAE AWED+K RLPD+VLE +CA+LG+ D  E GE  GLRAMAAV LRTLFD+  DVWFRVQ++TQ
Sbjct:   25 RRRAEEAWEDMKMRLPDQVLEQVCAVLGQADGGEGGE--GLRAMAAVLLRTLFDIRSDVWFRVQQQTQ 90
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BLAST of mRNA_Ecto-sp13_S_contig14447.3420.1 vs. uniprot
Match: A0A6H5JCW6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW6_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.420e-10
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   52 EVLENMCAILGR-DDAEAGEAAGLRAMAAVWLRTLFDVHYDVWFRVQERTQ 201
            +VLE +CA+LG+ D  E GE  GLRAMAAV LRTLFD+  DVWFRVQ+ TQ
Sbjct:   47 QVLEQVCAVLGQADGGEVGE--GLRAMAAVLLRTLFDIRSDVWFRVQQETQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14447.3420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMD8_ECTSI9.450e-4590.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FNE2_ECTSI3.410e-2070.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCW6_9PHAE3.420e-1066.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14447contigEcto-sp13_S_contig14447:2..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score92.8
Seed ortholog evalue7.8e-17
Seed eggNOG ortholog2880.D7FNE2
Model size243
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2171@1,KOG2171@2759
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-00_002830.1
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462771.0190694-CDS-Ecto-sp13_S_contig14447:1..551681462771.0190694-CDS-Ecto-sp13_S_contig14447:1..55Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14447 2..55 +
1681462771.0298033-CDS-Ecto-sp13_S_contig14447:433..5871681462771.0298033-CDS-Ecto-sp13_S_contig14447:433..587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14447 434..587 +
1681462771.0387983-CDS-Ecto-sp13_S_contig14447:719..7541681462771.0387983-CDS-Ecto-sp13_S_contig14447:719..754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14447 720..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14447.3420.1prot_Ecto-sp13_S_contig14447.3420.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14447 2..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14447.3420.1

>prot_Ecto-sp13_S_contig14447.3420.1 ID=prot_Ecto-sp13_S_contig14447.3420.1|Name=mRNA_Ecto-sp13_S_contig14447.3420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
RRRAEVAWEDLKQRLPDEVLENMCAILGRDDAEAGEAAGLRAMAAVWLRT
LFDVHYDVWFRVQERTQKAGGTGWFEDVASP
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mRNA from alignment at Ecto-sp13_S_contig14447:2..754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14447.3420.1 ID=mRNA_Ecto-sp13_S_contig14447.3420.1|Name=mRNA_Ecto-sp13_S_contig14447.3420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14447:2..754+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGGAGGGCGGAGGTGGCTTGGGAAGACCTGAAGCAACGGCTCCCTGA
CGAGGTAGGTTGTTGCAGGAGGATGGGCCAGCGGGAGCACCACTGCACCA
GTGCTTGGAAATATTTGGGAAAAACCATGTCTTCTGATGGATCATGGGCA
CGCGGCATTTGGTATTTTTCTGGCGGCCTGAAGTCATTCCTCTTGTCGTG
AAGTCAAGAGGCGCTGTCGCCGCCGGCGTGTGTCTTGGCTGCTTGTAGTA
GGAAGGCTGGTAGTGTTTTTCGTCAGGTGCGAGCGACAGTTGGAGTCACC
AAAGCTCCACCACCAGCACAACGCCCAACACGCTACAGCAGCACTGCCGC
CACCAGCACAACATCAACCCCGACACATGCCAACCGCAACAAGGCTCGTC
ACACCGTCTAACAAGGCCGTCTGTTCGCGCAGGTTCTGGAGAACATGTGC
GCCATCCTGGGGCGCGATGATGCGGAAGCCGGCGAGGCGGCGGGGCTGCG
AGCCATGGCGGCAGTTTGGCTGCGCACACTGTTCGACGTCCACTACGACG
TCTGGTTTAGGGTCCAGGAGCGCACTCAGAAAGCAGGTGAGATGTGGTGC
TGATTAATTCTGACCTAGGGTCCGGGAACGCACTCAGATTGTCTTGTGTA
TGTTGGATGTCCGGATGTATTTTTCTTGCTGCTTGGGCGTGCGTCCCGCG
GTACGGGAACGCCCTCAGGTGGAACGGGATGGTTTGAAGATGTTGCTTCC
CCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14447:2..754+

>mRNA_Ecto-sp13_S_contig14447.3420.1 ID=mRNA_Ecto-sp13_S_contig14447.3420.1|Name=mRNA_Ecto-sp13_S_contig14447.3420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14447:2..754+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGACGGAGGGCGGAGGTGGCTTGGGAAGACCTGAAGCAACGGCTCCCTGA
CGAGGTTCTGGAGAACATGTGCGCCATCCTGGGGCGCGATGATGCGGAAG
CCGGCGAGGCGGCGGGGCTGCGAGCCATGGCGGCAGTTTGGCTGCGCACA
CTGTTCGACGTCCACTACGACGTCTGGTTTAGGGTCCAGGAGCGCACTCA
GAAAGCAGGTGGAACGGGATGGTTTGAAGATGTTGCTTCCCCC
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