mRNA_Ecto-sp13_S_contig14438.3413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14438.3413.1
Unique NamemRNA_Ecto-sp13_S_contig14438.3413.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.150e-31
Identity = 82/102 (80.39%), Postives = 83/102 (81.37%), Query Frame = 1 
Query:    1 GCGSRVRGEDLQHHLSKECPKRVVTCPLGCPENQLWAEXXXXXXXXXXXXXXXXXXXXXGEQVAVCSREQHEEAECSERLVKCECGMEHPFSKTEDHRYIRC 306
            GCGSRVRGEDLQH              LGCPE+QLWAE XXXXXXXXXXXXXXXXXXXXGEQVAVCSREQHE AECSERLVKCECGMEHPFSKTEDHR   C
Sbjct:  102 GCGSRVRGEDLQHXXXXXXXXXXXXXXLGCPEDQLWAEEXXXXXXXXXXXXXXXXXXXXGEQVAVCSREQHEAAECSERLVKCECGMEHPFSKTEDHRITAC 203
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BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.650e-14
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  184 QVAVCSREQHEEAECSERLVKCECGMEHPFSKTEDHRYIRC 306
            +VAVCSREQHE A CSERLVKCECGMEHPFSKT DHR   C
Sbjct:  730 RVAVCSREQHEAAGCSERLVKCECGMEHPFSKTGDHRITTC 770
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BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Match: A0A8K1FE35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE35_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 3.490e-5
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   31 LQHHLSKECPKRVVTCPLGCPENQLWAEXXXXXXXXXXXXXXXXXXXXX-GEQVAVCSREQHEEAECSERLVKCECG 258
            LQ H ++ECP+RV+ CPLGC  + LWA+  XXXXXXXXXXXXXXXX    G +V       H   EC  R V CECG
Sbjct: 2244 LQDHENRECPRRVIACPLGCGISTLWADALXXXXXXXXXXXXXXXXQVKCGREVVWNRLTLHSTEECEYRTVLCECG 2320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW96_ECTSI1.150e-3180.39Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE7.650e-1482.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1FE35_PYTOL3.490e-555.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14438contigEcto-sp13_S_contig14438:3689..4262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score124.8
Seed ortholog evalue2.4e-26
Seed eggNOG ortholog2880.D7FW96
Model size312
KEGG koko:K08873
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.TNF receptor-associated factor
EggNOG OGsCOG0666@1,KOG0297@1,KOG0297@2759,KOG4177@2759
EC2.7.11.1
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.5667994-CDS-Ecto-sp13_S_contig14438:3688..38831681462770.5667994-CDS-Ecto-sp13_S_contig14438:3688..3883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14438 3689..3883 -
1681462770.5766509-CDS-Ecto-sp13_S_contig14438:4145..42621681462770.5766509-CDS-Ecto-sp13_S_contig14438:4145..4262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14438 4146..4262 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14438.3413.1prot_Ecto-sp13_S_contig14438.3413.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14438 3689..4262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14438.3413.1

>prot_Ecto-sp13_S_contig14438.3413.1 ID=prot_Ecto-sp13_S_contig14438.3413.1|Name=mRNA_Ecto-sp13_S_contig14438.3413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
GCGSRVRGEDLQHHLSKECPKRVVTCPLGCPENQLWAEEVSSHLRDSCPL
QLEPCRRGCGEQVAVCSREQHEEAECSERLVKCECGMEHPFSKTEDHRYI
RCST
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mRNA from alignment at Ecto-sp13_S_contig14438:3689..4262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14438.3413.1 ID=mRNA_Ecto-sp13_S_contig14438.3413.1|Name=mRNA_Ecto-sp13_S_contig14438.3413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=574bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14438:3689..4262- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATGCGGCTCTCGCGTACGGGGGGAAGACCTCCAGCACCACCTTTCCAA
GGAATGCCCGAAGCGAGTCGTAACGTGCCCGTTGGGTTGCCCAGAAAACC
AGCTCTGGGCCGAAGAGGTGATGCGGTTAATATCGGTTGATTGTTTTTAA
TGGTGGTGTTTGAGTCTGAGCAGCTTGGGGGTACGTATTTCTTTGTTTCT
CGCGTCGTCCCTGTTGCAGTTGGCCATCTGATCTCGGAGCGTTGTCGGCC
ATTTGAAAACAGTTTTCGTGTTGAATTTTTGCAGCTGGGTGGAGGTTTTG
GGACAATGACTGGTTGTTGATTTCCCTCAAATGAAGTAAGTTCATGTTAA
TTTTTTGGTGATTGCGACAACAACGCCAGGTGTCGTCTCACTTGCGGGAC
AGCTGTCCGTTGCAGCTGGAGCCTTGCCGCCGGGGGTGTGGCGAACAGGT
GGCGGTCTGCTCGAGGGAGCAGCACGAGGAAGCGGAGTGTTCGGAGAGAC
TCGTCAAGTGCGAGTGCGGGATGGAGCACCCCTTCTCCAAGACCGAAGAT
CACAGGTACATCAGATGTAGTACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14438:3689..4262-

>mRNA_Ecto-sp13_S_contig14438.3413.1 ID=mRNA_Ecto-sp13_S_contig14438.3413.1|Name=mRNA_Ecto-sp13_S_contig14438.3413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14438:3689..4262- (Ectocarpus species13 EcNAP12_S_4_19m)
GGATGCGGCTCTCGCGTACGGGGGGAAGACCTCCAGCACCACCTTTCCAA
GGAATGCCCGAAGCGAGTCGTAACGTGCCCGTTGGGTTGCCCAGAAAACC
AGCTCTGGGCCGAAGAGGTGTCGTCTCACTTGCGGGACAGCTGTCCGTTG
CAGCTGGAGCCTTGCCGCCGGGGGTGTGGCGAACAGGTGGCGGTCTGCTC
GAGGGAGCAGCACGAGGAAGCGGAGTGTTCGGAGAGACTCGTCAAGTGCG
AGTGCGGGATGGAGCACCCCTTCTCCAAGACCGAAGATCACAGGTACATC
AGATGTAGTACA
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