prot_Ecto-sp13_S_contig14438.3413.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14438.3413.1
Unique Nameprot_Ecto-sp13_S_contig14438.3413.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length104
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Match: D7FW96_ECTSI (Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW96_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.150e-31
Identity = 82/102 (80.39%), Postives = 83/102 (81.37%), Query Frame = 0 
Query:    1 GCGSRVRGEDLQHHLSKECPKRVVTCPLGCPENQLWAEXXXXXXXXXXXXXXXXXXXXXGEQVAVCSREQHEEAECSERLVKCECGMEHPFSKTEDHRYIRC 102
            GCGSRVRGEDLQH              LGCPE+QLWAE XXXXXXXXXXXXXXXXXXXXGEQVAVCSREQHE AECSERLVKCECGMEHPFSKTEDHR   C
Sbjct:  102 GCGSRVRGEDLQHXXXXXXXXXXXXXXLGCPEDQLWAEEXXXXXXXXXXXXXXXXXXXXGEQVAVCSREQHEAAECSERLVKCECGMEHPFSKTEDHRITAC 203
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BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Match: A0A6H5L2H6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H6_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.650e-14
Identity = 34/41 (82.93%), Postives = 35/41 (85.37%), Query Frame = 0 
Query:   62 QVAVCSREQHEEAECSERLVKCECGMEHPFSKTEDHRYIRC 102
            +VAVCSREQHE A CSERLVKCECGMEHPFSKT DHR   C
Sbjct:  730 RVAVCSREQHEAAGCSERLVKCECGMEHPFSKTGDHRITTC 770
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BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Match: A0A8K1FE35_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FE35_PYTOL)

HSP 1 Score: 51.2 bits (121), Expect = 3.490e-5
Identity = 43/77 (55.84%), Postives = 50/77 (64.94%), Query Frame = 0 
Query:   11 LQHHLSKECPKRVVTCPLGCPENQLWAEXXXXXXXXXXXXXXXXXXXXX-GEQVAVCSREQHEEAECSERLVKCECG 86
            LQ H ++ECP+RV+ CPLGC  + LWA+  XXXXXXXXXXXXXXXX    G +V       H   EC  R V CECG
Sbjct: 2244 LQDHENRECPRRVIACPLGCGISTLWADALXXXXXXXXXXXXXXXXQVKCGREVVWNRLTLHSTEECEYRTVLCECG 2320
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14438.3413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FW96_ECTSI1.150e-3180.39Ankyrin, TRAF-type zinc finger protein n=1 Tax=Ect... [more]
A0A6H5L2H6_9PHAE7.650e-1482.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1FE35_PYTOL3.490e-555.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 14..71
e-value: 2.6E-8
score: 34.4
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 14..63
score: 11.147
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..45
e-value: 6.7E-8
score: 34.7
coord: 46..104
e-value: 3.4E-7
score: 32.4
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 1..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14438contigEcto-sp13_S_contig14438:3689..4262 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14438.3413.1mRNA_Ecto-sp13_S_contig14438.3413.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14438 3689..4262 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14438.3413.1 ID=prot_Ecto-sp13_S_contig14438.3413.1|Name=mRNA_Ecto-sp13_S_contig14438.3413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
GCGSRVRGEDLQHHLSKECPKRVVTCPLGCPENQLWAEEVSSHLRDSCPL
QLEPCRRGCGEQVAVCSREQHEEAECSERLVKCECGMEHPFSKTEDHRYI
RCST
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001293Znf_TRAF
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like