mRNA_Ecto-sp13_S_contig14432.3408.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI) HSP 1 Score: 250 bits (639), Expect = 3.720e-82 Identity = 136/139 (97.84%), Postives = 136/139 (97.84%), Query Frame = 1
Query: 1 MFRNAVRRVAGPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
MFRNAVRR A PVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRV KGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG
Sbjct: 1 MFRNAVRRAAAPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A6V1WQS7_HETAK (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WQS7_HETAK) HSP 1 Score: 95.5 bits (236), Expect = 1.340e-21 Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 193 IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
+DD+++QD YFEKDR+ KG+ KREFTYFMLG SRF+YAS+ARL L+KF++S +ADV+ALA+ E EL +EMG
Sbjct: 42 VDDMSSQDHYFEKDRLAKGE-NKREFTYFMLGCSRFIYASAARLALIKFVSSMSASADVLALASVEVELGAVEMG 115
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A2D4CB52_PYTIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CB52_PYTIN) HSP 1 Score: 95.1 bits (235), Expect = 1.630e-21 Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 1
Query: 166 ASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
A++ ++ +DD ++ D YFEKDR+ GDP KR FTYFMLG +R YA++ARL ++KF+ S +ADV+ALATAEF+L +I+ G
Sbjct: 25 AAFSTKSAVVDDFSSPDHYFEKDRIASGDPSKRAFTYFMLGGARVAYATAARLAVIKFVGSMSASADVLALATAEFDLSNIDEG 108
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 8.690e-20 Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 184 AGEIDDLTNQDGYFEKDRVVK--GDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
AG +D + + D Y+EKD++ K GDP KR+FTYF+LG +RF+YAS+ARL+ LKF+++ +ADV+ALA AEF++ DI +G
Sbjct: 40 AGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLG 119
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A5D6XVF7_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVF7_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.820e-19 Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 193 IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
+DD ++ D YFEKDR+ GDP KR FTYF+LG +R YA++ RL ++KF+ S +ADV+ALATAEF+L +I+ G
Sbjct: 31 VDDYSSPDHYFEKDRIAPGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A2P4YJR4_9STRA (Cytochrome b-c1 complex subunit Rieske (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJR4_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.460e-19 Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 1
Query: 148 SSEVAPA---SYIGRAGE-----IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
SS VAP ++ GRA +D + D YFEKDR+ GDP KR FTYFMLG +R YA++ARL ++KF+ S +ADV+ALATAEF+L +I G
Sbjct: 7 SSSVAPRCMQTFQGRAAMSSKAVVDTYESADHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: F0W758_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=F0W758_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.820e-19 Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 1
Query: 193 IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
+DD++ D YFE DR+ GDP +R FTYF+LG +R +YA++ARL ++KF+ S +ADV+ALATAEF+L I+ G
Sbjct: 34 VDDMSTPDHYFETDRISSGDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEG 108
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: W2M1B7_PHYPR (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=10 Tax=Peronosporaceae TaxID=4777 RepID=W2M1B7_PHYPR) HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18 Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query: 148 SSEVAPA---SYIGRA----GEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
SS VAP ++ GRA +D + D YFEKDR+ GDP KR FTYFMLG +R YA++ARL ++KF+ S +ADV+ALATAEF+L I G
Sbjct: 7 SSSVAPRCKQAFQGRALSSKALVDTYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEG 103
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: K3WIU0_GLOUD (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU0_GLOUD) HSP 1 Score: 87.4 bits (215), Expect = 1.410e-18 Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 160 APASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
A A+ + +D+ + D YFEKDR+ GDP KR FTYF+LG +R YA++ RL ++KF+ S +ADV+ALATAEF+L +I+ G
Sbjct: 20 ARAAGMSTKAAVDNFASPDHYFEKDRISAGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: H3GII1_PHYRM (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3GII1_PHYRM) HSP 1 Score: 86.3 bits (212), Expect = 3.820e-18 Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 1
Query: 148 SSEVAPA---SYIGRAGE-----IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 417
SS VAP ++ GRA ++ + D YFEKDR+ GDP KR FTYFMLG +R YA++ARL ++KF+ S +ADV+ALATAEF+L +I G
Sbjct: 7 SSSVAPRCTQAFQGRAAMSSKAVVETYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14432.3408.1 >prot_Ecto-sp13_S_contig14432.3408.1 ID=prot_Ecto-sp13_S_contig14432.3408.1|Name=mRNA_Ecto-sp13_S_contig14432.3408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp MFRNAVRRVAGPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSback to top mRNA from alignment at Ecto-sp13_S_contig14432:85..3952- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14432.3408.1 ID=mRNA_Ecto-sp13_S_contig14432.3408.1|Name=mRNA_Ecto-sp13_S_contig14432.3408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3868bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14432:85..3952- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14432:85..3952- >mRNA_Ecto-sp13_S_contig14432.3408.1 ID=mRNA_Ecto-sp13_S_contig14432.3408.1|Name=mRNA_Ecto-sp13_S_contig14432.3408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14432:85..3952- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |