prot_Ecto-sp13_S_contig14432.3408.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14432.3408.1
Unique Nameprot_Ecto-sp13_S_contig14432.3408.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length139
Homology
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI)

HSP 1 Score: 250 bits (639), Expect = 3.720e-82
Identity = 136/139 (97.84%), Postives = 136/139 (97.84%), Query Frame = 0
Query:    1 MFRNAVRRVAGPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            MFRNAVRR A PVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRV KGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG
Sbjct:    1 MFRNAVRRAAAPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTSSEVAPASYIGRAGEIDDLTNQDGYFEKDRVAKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A6V1WQS7_HETAK (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WQS7_HETAK)

HSP 1 Score: 95.5 bits (236), Expect = 1.340e-21
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 0
Query:   65 IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            +DD+++QD YFEKDR+ KG+  KREFTYFMLG SRF+YAS+ARL L+KF++S   +ADV+ALA+ E EL  +EMG
Sbjct:   42 VDDMSSQDHYFEKDRLAKGE-NKREFTYFMLGCSRFIYASAARLALIKFVSSMSASADVLALASVEVELGAVEMG 115          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A2D4CB52_PYTIN (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CB52_PYTIN)

HSP 1 Score: 95.1 bits (235), Expect = 1.630e-21
Identity = 44/84 (52.38%), Postives = 63/84 (75.00%), Query Frame = 0
Query:   56 ASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            A++  ++  +DD ++ D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L +I+ G
Sbjct:   25 AAFSTKSAVVDDFSSPDHYFEKDRIASGDPSKRAFTYFMLGGARVAYATAARLAVIKFVGSMSASADVLALATAEFDLSNIDEG 108          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 8.690e-20
Identity = 43/80 (53.75%), Postives = 63/80 (78.75%), Query Frame = 0
Query:   62 AGEIDDLTNQDGYFEKDRVVK--GDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            AG +D + + D Y+EKD++ K  GDP KR+FTYF+LG +RF+YAS+ARL+ LKF+++   +ADV+ALA AEF++ DI +G
Sbjct:   40 AGPVDKMESFDNYYEKDKLHKKPGDPNKRDFTYFVLGGARFIYASAARLVALKFVSTMSASADVLALANAEFDIGDIPLG 119          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A5D6XVF7_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XVF7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.820e-19
Identity = 41/75 (54.67%), Postives = 57/75 (76.00%), Query Frame = 0
Query:   65 IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            +DD ++ D YFEKDR+  GDP KR FTYF+LG +R  YA++ RL ++KF+ S   +ADV+ALATAEF+L +I+ G
Sbjct:   31 VDDYSSPDHYFEKDRIAPGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: A0A2P4YJR4_9STRA (Cytochrome b-c1 complex subunit Rieske (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJR4_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.460e-19
Identity = 50/98 (51.02%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   50 SSEVAPA---SYIGRAGE-----IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            SS VAP    ++ GRA       +D   + D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L +I  G
Sbjct:    7 SSSVAPRCMQTFQGRAAMSSKAVVDTYESADHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: F0W758_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Albugo TaxID=65356 RepID=F0W758_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.820e-19
Identity = 40/75 (53.33%), Postives = 57/75 (76.00%), Query Frame = 0
Query:   65 IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            +DD++  D YFE DR+  GDP +R FTYF+LG +R +YA++ARL ++KF+ S   +ADV+ALATAEF+L  I+ G
Sbjct:   34 VDDMSTPDHYFETDRISSGDPSRRAFTYFVLGGARIMYATAARLAVIKFVGSMSASADVLALATAEFDLSSIDEG 108          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: W2M1B7_PHYPR (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=10 Tax=Peronosporaceae TaxID=4777 RepID=W2M1B7_PHYPR)

HSP 1 Score: 87.4 bits (215), Expect = 1.350e-18
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 0
Query:   50 SSEVAPA---SYIGRA----GEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            SS VAP    ++ GRA      +D   + D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L  I  G
Sbjct:    7 SSSVAPRCKQAFQGRALSSKALVDTYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSSINEG 103          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: K3WIU0_GLOUD (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIU0_GLOUD)

HSP 1 Score: 87.4 bits (215), Expect = 1.410e-18
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   54 APASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            A A+ +     +D+  + D YFEKDR+  GDP KR FTYF+LG +R  YA++ RL ++KF+ S   +ADV+ALATAEF+L +I+ G
Sbjct:   20 ARAAGMSTKAAVDNFASPDHYFEKDRISAGDPSKRAFTYFLLGGARVAYATAGRLAVIKFVGSMSASADVLALATAEFDLSNIDEG 105          
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Match: H3GII1_PHYRM (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=13 Tax=Peronosporaceae TaxID=4777 RepID=H3GII1_PHYRM)

HSP 1 Score: 86.3 bits (212), Expect = 3.820e-18
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   50 SSEVAPA---SYIGRAGE-----IDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRFLYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG 139
            SS VAP    ++ GRA       ++   + D YFEKDR+  GDP KR FTYFMLG +R  YA++ARL ++KF+ S   +ADV+ALATAEF+L +I  G
Sbjct:    7 SSSVAPRCTQAFQGRAAMSSKAVVETYESPDHYFEKDRIDAGDPSKRAFTYFMLGGARVAYATAARLAVVKFVGSMSASADVLALATAEFDLSNINEG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14432.3408.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK16_ECTSI3.720e-8297.84Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A6V1WQS7_HETAK1.340e-2162.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A2D4CB52_PYTIN1.630e-2152.38Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
W7TQL4_9STRA8.690e-2053.75Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A5D6XVF7_9STRA1.820e-1954.67Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A2P4YJR4_9STRA3.460e-1951.02Cytochrome b-c1 complex subunit Rieske (Fragment) ... [more]
F0W758_9STRA3.820e-1953.33Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
W2M1B7_PHYPR1.350e-1851.55Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
K3WIU0_GLOUD1.410e-1848.84Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
H3GII1_PHYRM3.820e-1850.00Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004192Cytochrome b-c1 complex subunit Rieske, transmembrane domainPFAMPF02921UCR_TMcoord: 83..122
e-value: 1.3E-5
score: 25.6
NoneNo IPR availablePANTHERPTHR10134:SF25coord: 75..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..139
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8
NoneNo IPR availableSUPERFAMILY81502ISP transmembrane anchorcoord: 77..124
IPR014349Rieske iron-sulphur proteinPANTHERPTHR10134CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 75..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14432contigEcto-sp13_S_contig14432:85..3952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14432.3408.1mRNA_Ecto-sp13_S_contig14432.3408.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14432 85..3952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14432.3408.1 ID=prot_Ecto-sp13_S_contig14432.3408.1|Name=mRNA_Ecto-sp13_S_contig14432.3408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MFRNAVRRVAGPVALRAVATPAKAVVVPRAASACRPALASRSLSAVTTTS
SEVAPASYIGRAGEIDDLTNQDGYFEKDRVVKGDPGKREFTYFMLGASRF
LYASSARLILLKFLASWEPAADVMALATAEFELKDIEMG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004192Rieske_TM
IPR014349Rieske_Fe-S_prot