prot_Ecto-sp13_S_contig14430.3406.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14430.3406.1
Unique Nameprot_Ecto-sp13_S_contig14430.3406.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length85
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14430.3406.1 vs. uniprot
Match: A0A6H5JBD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD6_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 5.700e-50
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0 
Query:    1 MGDDGCSASELRRRYHMGGDLKDDCLTAPQLRARYAIKKNTAEFSTKTGGARSGDMTSSVWPLAAVLALLLVAILFAVRTGGSE 84
            MGDDGCSASELRRRYHMGGDLKDD LTAPQLRARY IKKNTAEFSTKTGGARSGDMTSSVWPLAAVLAL+LVAILFAVRTGGS+
Sbjct:    1 MGDDGCSASELRRRYHMGGDLKDDSLTAPQLRARYGIKKNTAEFSTKTGGARSGDMTSSVWPLAAVLALVLVAILFAVRTGGSK 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14430.3406.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBD6_9PHAE5.700e-5095.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 60..78
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 79..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..59
NoneNo IPR availableTMHMMTMhelixcoord: 60..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14430contigEcto-sp13_S_contig14430:1334..2584 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14430.3406.1mRNA_Ecto-sp13_S_contig14430.3406.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14430 1334..3055 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14430.3406.1 ID=prot_Ecto-sp13_S_contig14430.3406.1|Name=mRNA_Ecto-sp13_S_contig14430.3406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MGDDGCSASELRRRYHMGGDLKDDCLTAPQLRARYAIKKNTAEFSTKTGG
ARSGDMTSSVWPLAAVLALLLVAILFAVRTGGSE*
back to top