mRNA_Ecto-sp13_S_contig14430.3406.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14430.3406.1
Unique NamemRNA_Ecto-sp13_S_contig14430.3406.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14430.3406.1 vs. uniprot
Match: A0A6H5JBD6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.360e-47
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1 
Query:    1 MGDDGCSASELRRRYHMGGDLKDDCLTAPQLRARYAIKKNTAEFSTKTGGARSGDMTSSVWPLAAVLALLLVAILFAVRTGGSE 252
            MGDDGCSASELRRRYHMGGDLKDD LTAPQLRARY IKKNTAEFSTKTGGARSGDMTSSVWPLAAVLAL+LVAILFAVRTGGS+
Sbjct:    1 MGDDGCSASELRRRYHMGGDLKDDSLTAPQLRARYGIKKNTAEFSTKTGGARSGDMTSSVWPLAAVLALVLVAILFAVRTGGSK 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14430.3406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBD6_9PHAE1.360e-4795.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14430contigEcto-sp13_S_contig14430:1334..3055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size726
Hectar predicted targeting categorysignal anchor
Exons2
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.2278407-CDS-Ecto-sp13_S_contig14430:1333..14601681462770.2278407-CDS-Ecto-sp13_S_contig14430:1333..1460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14430 1334..1460 +
1681462770.2409549-CDS-Ecto-sp13_S_contig14430:2456..25841681462770.2409549-CDS-Ecto-sp13_S_contig14430:2456..2584Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14430 2457..2584 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462770.2531242-UTR-Ecto-sp13_S_contig14430:2584..30551681462770.2531242-UTR-Ecto-sp13_S_contig14430:2584..3055Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14430 2585..3055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14430.3406.1prot_Ecto-sp13_S_contig14430.3406.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14430 1334..2584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14430.3406.1

>prot_Ecto-sp13_S_contig14430.3406.1 ID=prot_Ecto-sp13_S_contig14430.3406.1|Name=mRNA_Ecto-sp13_S_contig14430.3406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MGDDGCSASELRRRYHMGGDLKDDCLTAPQLRARYAIKKNTAEFSTKTGG
ARSGDMTSSVWPLAAVLALLLVAILFAVRTGGSE*
back to top

mRNA from alignment at Ecto-sp13_S_contig14430:1334..3055+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14430.3406.1 ID=mRNA_Ecto-sp13_S_contig14430.3406.1|Name=mRNA_Ecto-sp13_S_contig14430.3406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1722bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14430:1334..3055+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGACGATGGCTGCAGTGCTTCTGAACTCAGACGTCGGTATCACAT
GGGAGGAGATCTAAAGGATGACTGTTTGACCGCACCACAGCTTCGAGCCC
GGTACGCTATCAAGAAGAACACGGCAGGTGTGTCCGCAACCCGATACAGT
TACTTGTATGGTGATGGGAGTTGCTCTACTGTAGAGTCCGTAGTGCTGTG
GTCTACACTGATTATGGGTCCTTCTGATTATTTGTGACTTCCCGAAAGTG
TGTCGGGGTTAGTAACCTGTGGCCACGGACAAAGTCCACTTCAGTTAGAC
CAAGTACGCCAAAATGTACTGCGCAGAGATCGAAAGAGTTCTACACTGCT
GTCATCAAAAAGTTCTGACAAACGGATAACGCCACCCGAGCGGCTTCCAA
ACTTGCACCACCAGCAACGCCTTACATTCATCGAAGGTTGTGCCGCGTCC
GCGGATGTCATCTTAGACTTGGTGAATCTACCAACGGCGAAATTATTGAT
TTATGTAGACGGGGAATTCCCCTCTAGGTACGTGTTGAACCGCTGTGTGA
AGGTCTACGGTATCCTTCTTCAATAGATTTACATGTCTAATAGGTGGGTA
TACTTAACGACAGACAATAACATTCTCCATTTGGTTGGTGTTGAGAAGCA
CGATGACAACTAGACTAGTAAGTAGTCTTGTGGTCATCGTGCTTCTCAGT
AAAAGTTAATGCCCGAGTCCGTCAAGTCAAGCCACGAACACGTCCCCCCG
GGGTTGCCATCCCTCACTGTGATCAGCGCTGTCTTACCGATCCATGATCG
GTGTTGTACCACATACAATAAGAGACTCATCGGCATATTTTGCGTAGTCC
ATGACTTTTCCCATAAACATAGGGCGAAAATAATATCCTCGAAACATTAG
CTTTTCTTCAGAAGCACGATGACTCAACCTCGTCTGCGATTGATTATGCC
TCTGAGGGATACTCTACGTGGACGTTCCATCTAACCATATCGATCATAGT
CTTAAAGGAAGTGTGGTGTTGAACAGCACAGCAACCACCTGCTTGGCTCT
TCAGCTTTTGGTTCTGACTTGATTTATTGCCCTGCCCTCAAACTGCGATG
CTTCTTGCCATCAATCAAACCAGAATTCAGCACCAAGACCGGCGGAGCAC
GGAGCGGGGATATGACGTCGTCCGTTTGGCCATTGGCGGCCGTGCTTGCT
CTGTTATTGGTAGCAATCCTTTTCGCGGTGCGCACAGGAGGCAGCGAATA
GCCCGCGTTGTAGACAGTAGACCAACTCTGCGCGTGCTTGGGCCAGCTGA
GAAGGTTTTGGTTGCGTCGCAGCGCGTGACGTCTGGCTCGGAAATATTGA
AAGTCGTTGTCAGCGCGAGGGCAACGACGGGTCGTTCGTATTATCATTCT
ATTTGTGAGTGTGAACGTATCTGTATTGTGAGCAGGAGGGAGAATCTGGC
ATTTCCACTGTGCCACGGGAGCAAGCTATAGGTCTAAATCCTCTCACGCG
CGGAGATACGCTTGCTGTTGATGAAGAAGATGCCATTCCTATTTTGACTT
AATTATTTCTCGGGTACATCGCCGTTGTAAGCTTCAAGGTTTGAAAGCTG
TCGCGTTTCTTACTCGAGAGACTGGGGGGGGATGTCGAGACGTCTATTGC
TTGGGTTACGCAAATGGAAAATTTTTGGCAACTCGCTCGCCACGTTGAAG
ACGTCGTCCGCGTTGATCGGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14430:1334..3055+

>mRNA_Ecto-sp13_S_contig14430.3406.1 ID=mRNA_Ecto-sp13_S_contig14430.3406.1|Name=mRNA_Ecto-sp13_S_contig14430.3406.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14430:1334..3055+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGACGATGGCTGCAGTGCTTCTGAACTCAGACGTCGGTATCACAT
GGGAGGAGATCTAAAGGATGACTGTTTGACCGCACCACAGCTTCGAGCCC
GGTACGCTATCAAGAAGAACACGGCAGAATTCAGCACCAAGACCGGCGGA
GCACGGAGCGGGGATATGACGTCGTCCGTTTGGCCATTGGCGGCCGTGCT
TGCTCTGTTATTGGTAGCAATCCTTTTCGCGGTGCGCACAGGAGGCAGCG
AATAG
back to top