mRNA_Ecto-sp13_S_contig14380.3376.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14380.3376.1
Unique NamemRNA_Ecto-sp13_S_contig14380.3376.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 564 bits (1454), Expect = 3.020e-194
Identity = 303/326 (92.94%), Postives = 307/326 (94.17%), Query Frame = 1
Query:    1 LVTGDTSPTPTTTT---SGSFTCDGVLKGDYCCSAGCGECGGSGCSDRGGGLTGADCCTSDISNLCSDTGAAPCVVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            +V GDTSPT        SGSFTCDGVLKGDYCCSAGCGECGG        GLTGADCCTSDISNLCS TGAAPC+VDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSF ETTVTSWDTDKGEERT+YEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLC+DLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY
Sbjct:  292 IVDGDTSPTXXXXXXXXSGSFTCDGVLKGDYCCSAGCGECGGXXXXXXXXGLTGADCCTSDISNLCSVTGAAPCIVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFLETTVTSWDTDKGEERTEYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCSDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 617          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D8LRN0_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRN0_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 1.270e-101
Identity = 182/309 (58.90%), Postives = 217/309 (70.23%), Query Frame = 1
Query:   94 AGCGECGGSGCSDRGGGLTGADCCTSDISN---LCSDTGAAPCVVDGDSTGP-------TPTPXXXXXXXXXXXXXXXXX------GTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERT-KYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            AGCG CGG+GCS R G LT +DCC   I     LCS TG APC VDGDS+ P       +PTP  XXXXXX                T A++    D++ F  GGCATLTD+YN Q G+GPL+VLDS++N V G GGSA PTG WLLTS+++I D  TL+V G   GGD DVLRI+ST   +WEI G GG++ F+ T VTSWDT KG+ER  K   GRSFI C+TQ+DD+  +SCSG SNK+ G CRMDIIDSTMGNMG+  +ESYGLTWKVRGLC +LSN+++ D  NVYGDIK S+IYGMYYGMYSY
Sbjct:  146 AGCGTCGGTGCSQRPG-LTDSDCCIGKIEESGPLCSVTGKAPCFVDGDSSAPEQTSPVPSPTPKTXXXXXXRSATPTPPTPVPSGCDTKATVQIDKDTAYFKSGGCATLTDLYNAQDGTGPLWVLDSNDNKVDGAGGSAKPTGRWLLTSNIKIEDDATLFVEGKDRGGDCDVLRIESTGSKYWEIFGHGGNMYFEGTKVTSWDTSKGKEREYKKNEGRSFIRCITQYDDN--YSCSGGSNKDMGTCRMDIIDSTMGNMGYDASESYGLTWKVRGLCKNLSNLKLFDKRNVYGDIKNSDIYGMYYGMYSY 451          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7G8D9_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8D9_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 3.450e-93
Identity = 149/225 (66.22%), Postives = 170/225 (75.56%), Query Frame = 1
Query:  313 ASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLC-----TDLS-NVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            A++  + D + F GGGC TLT MY  Q G GPLYVLD +N++V G     +PTGYWLL  +L ++DG TL VHGT+A GDADVLR+ ST DDF E+RG+GG+L F+ TTVTSWDTD G+ER     GRSFINCVTQFDDS IW C GRSN+E GECRMDII STMGNMGWFDAESYGLTWKVRG C     T +  N EI +DHNVYGDI  SEIYGMYYG YSY
Sbjct:  182 ATVRFTDDIAYFEGGGCGTLTQMYEAQEGDGPLYVLDENNDVVGG-----TPTGYWLLDRNLRVVDGSTLLVHGTAASGDADVLRLLSTSDDFIEVRGYGGNLHFQSTTVTSWDTDNGQEREWDGDGRSFINCVTQFDDSAIWDCDGRSNQEWGECRMDIISSTMGNMGWFDAESYGLTWKVRGACEIDPDTGVPYNHEIFEDHNVYGDILNSEIYGMYYGHYSY 401          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 2.470e-68
Identity = 140/314 (44.59%), Postives = 177/314 (56.37%), Query Frame = 1
Query:   64 GVLKGDYCCSAGCGECGGSGCSDRGGGLTGADCCTSDISN---LCSDTGAAPCVVDGDSTGPTPTPXXXXXXXXXXXXXXXXXGTIASISTSSDSSSFSGGGCATLTDMYNTQ-----SGSGPLYVLDSSNNIVSGGGGSASP---TGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDD-DFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            GV   + CC   CG CGGS C  RG GL  ADCC + IS    LCS+  +APC++D D TG TP                                   G GC T+TD+YN +     S  GP++ LD S N V       +P   +  WLLT+ L I  G   Y  G+S GGD D LRIQST   DF E+R  GGS+ F+ T VTSWDT     +  Y GGRSF+NCV++    ++  C G++  E GECRMDII+S +G +G+FD+ESYGLTWKVRG C DLSN ++ D  NVYG++ GS+I+  YYG YSY
Sbjct:   18 GVQSENICCHVDCGTCGGSECRRRGKGLGAADCCRNYISKNGALCSENLSAPCIMD-DVTGNTPDAE--------------------------------GEGCFTITDLYNFRLESDGSAKGPIFNLDDSYNTV------LNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEV--CVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSY 290          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.260e-61
Identity = 116/210 (55.24%), Postives = 143/210 (68.10%), Query Frame = 1
Query:  352 GGGCATLTDMYNTQSG---SGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDD-DFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            GGGCATLTD+Y  Q G    GPL+VLDS++N+V G     SPTGYWLL   + + +G  L VHG  AGGDA VLRIQST   D++EIRG GGSLSF +T VTSWDTD+ +  T Y+  RSFI CV++       +C G +    GECRMDII S MG MG+  AESYG++WKVRG C++  N E+ +   V GDI  S+IYGMYYG YS+
Sbjct:  404 GGGCATLTDIYTAQGGHNDDGPLFVLDSNDNVVGG-----SPTGYWLLMRDIHVEEGSLLQVHGPDAGGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSEDPNPEVFERTRVRGDIIDSDIYGMYYGHYSF 608          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 1.010e-58
Identity = 102/186 (54.84%), Postives = 127/186 (68.28%), Query Frame = 1
Query:  415 VLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTD-DDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            +LD S N ++      S T  WLL S L + DG   Y  G+  GGD D LRIQST  DD++E+RG GGS+ F  T VTSWDT   + +  YEGGRSF+NCV++    +  +C G++  + GECRMDII+S MG MG+FDAESYGLTWKVRG C DLSN ++ +  NVYGDIK S I+ MYYGMYSY
Sbjct:    1 MLDDSGNKITS---PTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGE--TCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSY 181          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.030e-58
Identity = 110/220 (50.00%), Postives = 141/220 (64.09%), Query Frame = 1
Query:  358 GCATLTDMYNTQ------SGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTD-DDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVR---------GLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            GC TLTD+YN +      S  GPLY+LD S + ++      S T  WLL + L + +G   Y  G+  GGD D LRIQST  DD++E+RG GGS+ F  T VTSWDT   + +  YEGGRSF+NCV++    +  +C G +  + GECRMDII+S MG MG+FD+ESYGLTWKVR         G C DLSN ++ +  NVYGDIK S+I+ MYYG YSY
Sbjct:   21 GCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITA---PTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGE--TCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSY 235          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 201 bits (512), Expect = 3.300e-57
Identity = 105/205 (51.22%), Postives = 132/205 (64.39%), Query Frame = 1
Query:  355 GGCATLTDMYNTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            GGC TL D++    G  PLY +  S+  VS     +S TG WLLT SL + DG+TL VHG SAGG AD LR+ ST  DF  +R  GGSL F  T V +WDT K + RT    GRS+I+ V++        C GR+ K  GE RMDI DS M  +G+F +ESYGLTWKVRGLC DLSN+E+ D  NVYG+I  S+I+  Y+G+Y+Y
Sbjct:   64 GGCVTLEDIWRDLDGGAPLYAVKPSSGDVS-----SSITGTWLLTESLYVEDGITLQVHGKSAGGKADELRLLSTSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVITDSKQKCDGRAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDAVNVYGNIYDSDIHHNYFGVYTY 263          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.060e-56
Identity = 112/216 (51.85%), Postives = 140/216 (64.81%), Query Frame = 1
Query:  352 GGGCATLTDMYNTQ------SGSGPLYVLDSSN---NIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQST-DDDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            G GC T+TD+YN +      S  GP+Y+LD      +I SG       T  WLL + L I  G   Y  GTSAGGD + LRIQST  DDF E+RG GGSL F++T VTSWDT   E +  YE GRSF+NCV++    D   C G +  E GECRMDII+S +  +G+FD+ESYG+TWKVRG C DLSN E+ +  NVYGD+ GS+I+ +YYG YSY
Sbjct:  446 GEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSG------ITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGD--DCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSY 653          
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 2.200e-56
Identity = 105/213 (49.30%), Postives = 144/213 (67.61%), Query Frame = 1
Query:  352 GGGCATLTDMY------NTQSGSGPLYVLDSSNNIVSGGGGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTD-DDFWEIRGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCSGRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMDDHNVYGDIKGSEIYGMYYGMYSY 969
            GGGC TL+D+Y      N  +  GP++VLDS++ +      + + TG WLLT+ L +  G TLY  G   GG+   LRI+ST   DF+EIRG GG+L F++T VTSWD D  + +  Y+ GRSFI CV++    +  +C+  +    GECRMDIIDS MG +G+  +E+YG+TWKVRG C+DLSN ++ DD NVYGD+KGS+I+ MYYGMYS+
Sbjct:    8 GGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDET---ATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGED-TCAINN---MGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSF 213          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14380.3376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWE8_ECTSI3.020e-19492.94Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LRN0_ECTSI1.270e-10158.90Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7G8D9_ECTSI3.450e-9366.22Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LRM4_ECTSI2.470e-6844.59Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JNF5_9PHAE1.260e-6155.24MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FIU4_ECTSI1.010e-5854.84Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JGU8_9PHAE1.030e-5850.00MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A8CEP1_SACJA3.300e-5751.22Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D8LC73_ECTSI1.060e-5651.85Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
D7FRR8_ECTSI2.200e-5649.30Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14380contigEcto-sp13_S_contig14380:3..4133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score301.6
Seed ortholog evalue4.4e-79
Seed eggNOG ortholog2880.D7G8D9
Model size969
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
Cds size969
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14380.3376.1prot_Ecto-sp13_S_contig14380.3376.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14380 3..4133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462767.856255-CDS-Ecto-sp13_S_contig14380:2..281681462767.856255-CDS-Ecto-sp13_S_contig14380:2..28Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 3..28 -
1681462767.870306-CDS-Ecto-sp13_S_contig14380:861..10181681462767.870306-CDS-Ecto-sp13_S_contig14380:861..1018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 862..1018 -
1681462767.8785717-CDS-Ecto-sp13_S_contig14380:1455..16021681462767.8785717-CDS-Ecto-sp13_S_contig14380:1455..1602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 1456..1602 -
1681462767.8871949-CDS-Ecto-sp13_S_contig14380:2068..21341681462767.8871949-CDS-Ecto-sp13_S_contig14380:2068..2134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 2069..2134 -
1681462767.9032097-CDS-Ecto-sp13_S_contig14380:2601..28311681462767.9032097-CDS-Ecto-sp13_S_contig14380:2601..2831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 2602..2831 -
1681462767.9160986-CDS-Ecto-sp13_S_contig14380:3107..32271681462767.9160986-CDS-Ecto-sp13_S_contig14380:3107..3227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 3108..3227 -
1681462767.9380836-CDS-Ecto-sp13_S_contig14380:3779..38801681462767.9380836-CDS-Ecto-sp13_S_contig14380:3779..3880Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 3780..3880 -
1681462767.949851-CDS-Ecto-sp13_S_contig14380:4011..41331681462767.949851-CDS-Ecto-sp13_S_contig14380:4011..4133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14380 4012..4133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14380.3376.1

>prot_Ecto-sp13_S_contig14380.3376.1 ID=prot_Ecto-sp13_S_contig14380.3376.1|Name=mRNA_Ecto-sp13_S_contig14380.3376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
LVTGDTSPTPTTTTSGSFTCDGVLKGDYCCSAGCGECGGSGCSDRGGGLT
GADCCTSDISNLCSDTGAAPCVVDGDSTGPTPTPPSPSPPTPSPPSPSTC
SGTIASISTSSDSSSFSGGGCATLTDMYNTQSGSGPLYVLDSSNNIVSGG
GGSASPTGYWLLTSSLEILDGVTLYVHGTSAGGDADVLRIQSTDDDFWEI
RGWGGSLSFKETTVTSWDTDKGEERTKYEGGRSFINCVTQFDDSDIWSCS
GRSNKERGECRMDIIDSTMGNMGWFDAESYGLTWKVRGLCTDLSNVEIMD
DHNVYGDIKGSEIYGMYYGMYSY
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mRNA from alignment at Ecto-sp13_S_contig14380:3..4133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14380.3376.1 ID=mRNA_Ecto-sp13_S_contig14380.3376.1|Name=mRNA_Ecto-sp13_S_contig14380.3376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14380:3..4133- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTCACAGGAGACACATCACCGACACCCACGACGACCACCTCGGGATC GTTCACGTGCGACGGCGTGCTCAAGGGCGACTACTGCTGCTCCGCCGGAT GCGGGGAGTGCGGTGGTTCCGGGTGAGTTGTGGCAGCGGTAGGATAGCAC CCGATAAGATAGTGGTCTCGTGTCACGTCCGCTTCGAAGGAAGACGAGAA GGCACTTCACCAAGAACGACCAACCACGGCCCAACCTCCACTCCCGCATG CAGGTGTAGCGACCGTGGCGGAGGCCTGACGGGCGCCGACTGCTGTACGT CGGATATCTCTAACCTTTGCTCGGACACCGGCGCCGCCCCGTGCGTCGTG GACGGTAGGTTGATCGCTCGCTCGCTCGCTCGCACCAAAAGGGGGCGGCT GTTACCGTCCATGTCCACGTAGATTGCTACAATTTAGTTGGGGATTGGGG CTGTAGTTTTCTTTCTCTCCTGTTCCCCGGCAGTTGATCGTTTTGCACTC AACACGAGAGAGAGTTCCGAATCAGCGTGTGTATCCCACCTCAAACGGGT GGATGTTACCTCGGGACTAGCGCGAGCGGGTAAGGATGAGCTAGATGCTC GCGAGATGAAGAGGGTTCGTGGCAACCGCCCAGGGGTCGTTCGAAGGGGG TCGTAGTCTTACAGTACGCGCCGCCACTCAAGCACCCGGGAGTGAAGATT TCCAGCTCTACAACATGACGAAACTTTCAGGAGTTGACCATAAGAACAGT TGAGGATCTTGCACCAAACCTCTATATAGTCCATGTTGGGTTTTCCCGCG GGGGAAAGCAGGCAACGAGCCTCGTGCAAAATGAAGTGTTCTTGACGCTG TGTTCGTTGACAATCCTGATTCGCTCGTACTCTCTCTCTGTGCGCGATGA CGATAGGCGACTCGACGGGACCCACGCCGACGCCTCCGAGCCCCTCGCCA CCGACGCCGTCGCCTCCTTCGCCGTCCACTTGCTCCGGGACCATCGCCTC CATCTCTACTTCCTCCGACTCGTCGTGTGAGTGCTTTTGTACGGGTCTGC GTCGACATCCAAAGACCACGGAACAAGTAGAGAAAACAGAACGATTGGTG GTACGCACCACCACCATCCGTCCGCCTCATCACCCTGCGCTTGTCACCCA CACGGCCTAGTCCGAGAATCCAACAACTCTGTCCGGCCGTACCACCTATT CGTGACCATGTCTCGCCGCGGCTGTGCCGATCATGTCCGGACACACGGCA AGCAAACACGAGAATCCCCTCCCTCCCCGCCCCCCTCAAAACTCCGCGCC AGCTTTCTCGGGGGGCGGGTGCGCTACCCTGACCGACATGTACAACACCC AGTCGGGAAGCGGCCCTCTCTACGTGCTGGACTCCAGCAACAACATCGTC AGCGGAGGGGGAGGCAGCGCGAGCCCCACCGGCTACTGGCTCCTCACCTC TTCCCTGGAGATCCTCGACGGAGTGACGCTGTACGTGCACGGGACGTCGG CCGGGGGCGACGCAGACGTGCTTCGCATCCAGGTTTGTACCTGCCTCAAA GGAGAGAGAGAGAGAGAGATTCGAGTGCAGGGATCGGTATTTTTTTTCGT GCGATGTTTGTGCTTCGTCTGCCGTCTCGCCTGGTGTTGTCTTTTTAGCA CCGTTCTCCACGAACACGTTCGGTTGCCGGAAAGGCGTTTTCCTGCGTGC AAGGAGTCATTGCGTGTGTGAAGACTCCCAAGAACAAGAAACGAAAACAT CAAGAAACGGCAACAGCAGAGTAGCAACGAAGATACACGAAAACCACGAT GACGACGACGATGACATGGTAGATCCTATTTCGTTAAGCCAGCCGAGACT ATAGGAACTCCGTTGCCATGACTCGCGCACGGTCAACTTGTGCATTATTT CGGATTTGCTTCCAGCGGCCAATATAGCTGCCAAAATCCGTTGCAAACTG GCCATTGCACTGCCCTCTTGCTTGACCATACGTCTGTCTTCTGTTTTAGT CTACCGACGATGATTTCTGGGAGATCCGCGGGTGGGGCGGCAGCCTGTCC TTCAAGGAGACTACGGTAAGAGAACGGTGGACAGACTCCCCACAGCGTTT TTTTTCTTTCACGCTATCAAGAGAGGAGTTCCGAAGGTGTAAAAGGCCTG ATGCGCGCAATAGATGGGGCGACACAAACGTGTGCACGCACACACACAAA CACGATTAGGGCGCATGATGTTGAGGTGGAGTTGGATTCAATAACGGCGA TCAGTGGGTATTGGGGGGGGGGGGGTTGGCAGAGGTACATAGCAACTACA GGATTGAAGGGTTCCGGATCGAACGATGCGTCGTGGGGCACCGACTAAAG GGGAATAAAAAACTACCGGTAGGGAAGAAAAAACGGTAACCAAAGCCGGC CACTTGTGTGTGCATTGTGGAAGAGGCGTACTGTGCCAACTGCGATCTAC ATTAGCAACGTCAACCCAGACACGCTTGTTGTTTTCTCGCTCCATGTCTC TTTTCGCTTGCGGTGGCGTCAACACGCGTAGGTCACCTCTTGGGACACTG ACAAGGGCGAGGAGAGGACCAAGTACGAGGGCGGGCGTTCTTTCATCAAC TGCGTCACTCAGTTCGATGACAGCGACATATGGTCGTGCAGTGGCCGCTC CAACAAAGAGAGGGGGGAGTGCAGGATGGTGAGCGCACACGCCGCCGTCG GAAGCAGAGAAGAAACCGTCCAGTCAGGCATATGCTTCCGTTTTCGGTTG ATACTTGTTGGAAATGCGTTGGAGTGCAAAGGACGACCGTTTCCTTGGGA ACAATCGAAACCCAACACGAGAAGTTTCTTTTGGACCAAAATCCGGCCAA GAGTCAATGCGTGCAGGACGAAAAGTCGACTCCACCACGAGAGGAACAAA AAAGTCCCAAACTATTCAAACGCAACAACAGCCTAACCCCTTCCATTGCA ACAGCTGCCTAACCAATTGTAATTGAACAACAGCCTAACTAACCCTTTCC ATTGCAACAATACAGTACCCTTGCCCTTTCGTGTCGGACCAAGCATCTGC CTCGTGCACAAGGCTATGCGTCGATCAACTGAAACATTGAACAAACAAAT TATGCCACCGTGCAGGACATCATCGACTCCACCATGGGTAACATGGGCTG GTTTGACGCGGAGTCTTACGGCCTCACGTGGAAGGTCCGCGGTCTGTGCA CAGACCTCTCCAACGTGGAGATCATGGACGACCACAACGTCTACGGCGAC ATCAAGGGTTCTGAGATCTACGGTGCGGCCTGGGGCGATATCGTCCGTTG TAGCGAGGTCTTTCTTCTTCTTGTTCGCATTTCTCGCTTCTCGTTTCGTT TTGATTGCGATGTGTCCACACGCAGCAGCGGAGCGTTTGATGCCTGGTAC TTTTGGTTGTTACCGTGGCGCCTCCGATTTTTTTGGTTGTTTTGATCTTC GCGATAACAACAATATTATGACCCACAAAAAACAGAAACAAGTACATAAC TGTATGTTGAACGGTTGGTCAAGGTAGATGGGCCAAGAGTGGGCACCGGT ATCAGCTGTTGGGCGCAGTGGCGCCTTTGCGACTGTCACTTGTCGAATCT CGCCGTCTCCCTCCCTCCTTCCTTCCCTTCCACCCCCGTTCCCAAACCAG GCCGCACAGACTAGTTGAGTCGGCCACAATGTCGACCGCCTTTGTCGTTT TCCGCCGCGTCCCTGTGGTCGTCGTGCCCCCTTCTTCTCATTGAGGAAGC CCGTGGCGAAAACTCACCGTACATGCACCTCGGTTTGTCTACATGCGCTT GCAGTGCCTTCTCCACACGTTCGTGGAAGCCGGTTCTCGTGCGCGGGGCG CGCACTCGCCATCGTTGGTCTCAGAAACTACCACGGTTTTCGCGTCGTTT CTTTCTTTTTTCGTCTCCCGCCCGCGCTCCTTCTACACCGCTGTGTCCAC ACTCGCCAACTGAACGCTTGGGCCACCCAAACGCCCCAACATGGTTGGTG TTTGGATGGGGACGGGTGTGTTCGCCTTGCTCATGCCCCCTTGTCGCCGC CGTCGTCGTCGTCGGTGTTGCATGTTTTTCTCTCCATCATTTTTGTTGTG ATAAGGCATGTACTACGGCATGTACTCCTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14380:3..4133-

>mRNA_Ecto-sp13_S_contig14380.3376.1 ID=mRNA_Ecto-sp13_S_contig14380.3376.1|Name=mRNA_Ecto-sp13_S_contig14380.3376.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14380:3..4133- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTCACAGGAGACACATCACCGACACCCACGACGACCACCTCGGGATC
GTTCACGTGCGACGGCGTGCTCAAGGGCGACTACTGCTGCTCCGCCGGAT
GCGGGGAGTGCGGTGGTTCCGGGTGTAGCGACCGTGGCGGAGGCCTGACG
GGCGCCGACTGCTGTACGTCGGATATCTCTAACCTTTGCTCGGACACCGG
CGCCGCCCCGTGCGTCGTGGACGGCGACTCGACGGGACCCACGCCGACGC
CTCCGAGCCCCTCGCCACCGACGCCGTCGCCTCCTTCGCCGTCCACTTGC
TCCGGGACCATCGCCTCCATCTCTACTTCCTCCGACTCGTCGTCTTTCTC
GGGGGGCGGGTGCGCTACCCTGACCGACATGTACAACACCCAGTCGGGAA
GCGGCCCTCTCTACGTGCTGGACTCCAGCAACAACATCGTCAGCGGAGGG
GGAGGCAGCGCGAGCCCCACCGGCTACTGGCTCCTCACCTCTTCCCTGGA
GATCCTCGACGGAGTGACGCTGTACGTGCACGGGACGTCGGCCGGGGGCG
ACGCAGACGTGCTTCGCATCCAGTCTACCGACGATGATTTCTGGGAGATC
CGCGGGTGGGGCGGCAGCCTGTCCTTCAAGGAGACTACGGTCACCTCTTG
GGACACTGACAAGGGCGAGGAGAGGACCAAGTACGAGGGCGGGCGTTCTT
TCATCAACTGCGTCACTCAGTTCGATGACAGCGACATATGGTCGTGCAGT
GGCCGCTCCAACAAAGAGAGGGGGGAGTGCAGGATGGACATCATCGACTC
CACCATGGGTAACATGGGCTGGTTTGACGCGGAGTCTTACGGCCTCACGT
GGAAGGTCCGCGGTCTGTGCACAGACCTCTCCAACGTGGAGATCATGGAC
GACCACAACGTCTACGGCGACATCAAGGGTTCTGAGATCTACGGCATGTA
CTACGGCATGTACTCCTAC
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